Non-Coding RNA Search

Ss1.1-Ova1-OVR010017C02.5.5

Sequence:


               
               AAGAAGCCGAGGAGGCGGCTCCCGCGCTCGCAGGGCCGTGCCACCTGCCCGCTCGCTCGC
CGCCGTCGCGCTCACCGCCGCCAACATGCTGCCGAGACTGGGCGGCACCGCGCTGTCGTT
GCTGCCGCTGCTGCTGCTGCTGCTGGGCACGGGCGGCCGCGGGGCGCGCGCCGAGGTGCT
GTTCCGCTGCCCGCCCTGCACGCCCGAGAGCCTGGCCGCCTGCAGGCCCCCTCCCGCCGC
GCCGCCCTCCGCCGGGGCCGGGCCGGCTGGCGACTCCCGCGCGCCCTGCGAGCTTGTCCG
GGAGCCGGGCTGCGGCTGCTGCTCTGTGTGCGCGCGGCTGGAGGGCGAGCGGTGCGGCGT
GTACACCCCGCGCTGCGCCCAGGGGCTGCGCTGCTATCCCCACCCGGGCTCCGAGCTGCC
CCTGCAGGCGCTGGTCCTGGGCGAGGGCACTTGCGAAAAGCGCCGCGATGCCGAGTACGG
CGCCAGCCCCGAGCAGGTTGCAGACAATGGCGACGATGCTGAGGGAGGCCTGGTTGAGAA
CCACGTGGATGGGAACGTGAACTTGTTGGGAGGTACAGGCGGTGCTGGCCGGAAGCCCCT
CAAGTCAGGCATGAAGGAGCTGGCTGTGTTCCGGGAGAAAGTCACGGAGCAGCACCGGCA
GATGGGCAAGGGTGGCAAGCATCACCTCGGCCTGGAGGAGCCCAAGAAGCTGCGGCCGCC
GCCTGCCAGGACCCCCTGCCAGCAGGAGTTGGACCAGGTCCTGGAACGGATCTCCACCAT
GCGCCTTCCGGATGAGCGGGGCCCCCTGGAGCACCTGTACTCCTTGCACATCCCCAACTG
TGACAAGCATGGCCTGTACAACCTCAAACAGTGCAAGATGTCTCTGAATGGGCAGCGTGG
GGAGTGCTGGTGCGTGAACCCCAACACCGGGAAGCTGATCCAGGGGGCCCCCACCATCCG
GGGGGACCCCGAGTGTCATCTCTTCTACAACGAGCAGCAGGGGGCTCGCGGGGCACACAC
CCAGCGGATGCAGTAAACCACAGCCAGCCGGTGCCTGGCACCCCCCCCCCCCACCCCTCT
TCAAACGCAGGCAGAGCGGGGAGAGTGCTTGCGTGGTGGGTGGGGGAGGATTTTCCAGGA
GTTCTGACATGCGTATTTATATTTGGAAAGAGACCAGCACCGAGCTTGGCACCCGTCCCC
CCCTCCTTCCCCCCTCCCCAGCTGGAGATGCCCAGCTGGAGATGCCCGCACCCTCCCTCC
TGGAATCCCTGCTGGGGAGGGAGGGGGTGGCTGCAGTGGCGGAGCTGGGGTAGAGGTTTG
GGAGGGGGGAAAAAAGAAATTTTTATTTTTGAACCCCTGTGTCTCTTTTGCTTAAGATTA
AAGGAAGGACAAATAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAAGCCGAGGAGGCGGCTCCCGCGCTCGCAGGGCCGTGCCACCTGCCCGCTCGCTCGC
CGCCGTCGCGCTCACCGCCGCCAACATGCTGCCGAGACTGGGCGGCACCGCGCTGTCGTT
GCTGCCGCTGCTGCTGCTGCTGCTGGGCACGGGCGGCCGCGGGGCGCGCGCCGAGGTGCT
GTTCCGCTGCCCGCCCTGCACGCCCGAGAGCCTGGCCGCCTGCAGGCCCCCTCCCGCCGC
GCCGCCCTCCGCCGGGGCCGGGCCGGCTGGCGACTCCCGCGCGCCCTGCGAGCTTGTCCG
GGAGCCGGGCTGCGGCTGCTGCTCTGTGTGCGCGCGGCTGGAGGGCGAGCGGTGCGGCGT
GTACACCCCGCGCTGCGCCCAGGGGCTGCGCTGCTATCCCCACCCGGGCTCCGAGCTGCC
CCTGCAGGCGCTGGTCCTGGGCGAGGGCACTTGCGAAAAGCGCCGCGATGCCGAGTACGG
CGCCAGCCCCGAGCAGGTTGCAGACAATGGCGACGATGCTGAGGGAGGCCTGGTTGAGAA
CCACGTGGATGGGAACGTGAACTTGTTGGGAGGTACAGGCGGTGCTGGCCGGAAGCCCCT
CAAGTCAGGCATGAAGGAGCTGGCTGTGTTCCGGGAGAAAGTCACGGAGCAGCACCGGCA
GATGGGCAAGGGTGGCAAGCATCACCTCGGCCTGGAGGAGCCCAAGAAGCTGCGGCCGCC
GCCTGCCAGGACCCCCTGCCAGCAGGAGTTGGACCAGGTCCTGGAACGGATCTCCACCAT
GCGCCTTCCGGATGAGCGGGGCCCCCTGGAGCACCTGTACTCCTTGCACATCCCCAACTG
TGACAAGCATGGCCTGTACAACCTCAAACAGTGCAAGATGTCTCTGAATGGGCAGCGTGG
GGAGTGCTGGTGCGTGAACCCCAACACCGGGAAGCTGATCCAGGGGGCCCCCACCATCCG
GGGGGACCCCGAGTGTCATCTCTTCTACAACGAGCAGCAGGGGGCTCGCGGGGCACACAC
CCAGCGGATGCAGTAAACCACAGCCAGCCGGTGCCTGGCACCCCCCCCCCCCACCCCTCT
TCAAACGCAGGCAGAGCGGGGAGAGTGCTTGCGTGGTGGGTGGGGGAGGATTTTCCAGGA
GTTCTGACATGCGTATTTATATTTGGAAAGAGACCAGCACCGAGCTTGGCACCCGTCCCC
CCCTCCTTCCCCCCTCCCCAGCTGGAGATGCCCAGCTGGAGATGCCCGCACCCTCCCTCC
TGGAATCCCTGCTGGGGAGGGAGGGGGTGGCTGCAGTGGCGGAGCTGGGGTAGAGGTTTG
GGAGGGGGGAAAAAAGAAATTTTTATTTTTGAACCCCTGTGTCTCTTTTGCTTAAGATTA
AAGGAAGGACAAATAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               IBP2_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               IBP2_PIG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               908-1027, - strand, RNAz p=0.953668
               

               
               1186-1345, + strand, RNAz p=0.999836

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               908-1027, - strand, RNAz p=0.953668
               

               
               1186-1345, + strand, RNAz p=0.999836

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_000597, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_000597, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               186-448, gnl|bosTau2|chr19 (34229099-34228838)
               

               
               186-448, gnl|Hg17|chr17 (35853546-35853807)
               

               
               186-448, gnl|Mm7|chr11 (99150568-99150829)
               


               
               499-730, gnl|bosTau2|chr2 (57633240-57633006)
               

               
               499-730, gnl|Hg17|chr2 (217350781-217351015)
               

               
               499-730, gnl|Mm7|chr1 (73090942-73091173)
               


               
               869-1397, gnl|bosTau2|chr2 (57629653-57629128)
               

               
               869-1397, gnl|Hg17|chr2 (217354166-217354665)
               

               
               869-1397, gnl|Mm7|chr1 (73093856-73094333)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               186-448, gnl|bosTau2|chr19 (34229099-34228838)
               

               
               186-448, gnl|Hg17|chr17 (35853546-35853807)
               

               
               186-448, gnl|Mm7|chr11 (99150568-99150829)
               


               
               499-730, gnl|bosTau2|chr2 (57633240-57633006)
               

               
               499-730, gnl|Hg17|chr2 (217350781-217351015)
               

               
               499-730, gnl|Mm7|chr1 (73090942-73091173)
               


               
               869-1397, gnl|bosTau2|chr2 (57629653-57629128)
               

               
               869-1397, gnl|Hg17|chr2 (217354166-217354665)
               

               
               869-1397, gnl|Mm7|chr1 (73093856-73094333)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               ute (1.06228)
               

               
               amn (0.417711)
               

               
               fli (0.405762)
               

               
               pla (0.267344)
               

               
               eep (0.245128)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (1.06228)
               

               
               amn (0.417711)
               

               
               fli (0.405762)
               

               
               pla (0.267344)
               

               
               eep (0.245128)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	908-1027, - strand, RNAz p=0.953668
	1186-1345, + strand, RNAz p=0.999836

	186-448, gnl\|bosTau2\|chr19 (34229099-34228838)
	186-448, gnl\|Hg17\|chr17 (35853546-35853807)
	186-448, gnl\|Mm7\|chr11 (99150568-99150829)

	499-730, gnl\|bosTau2\|chr2 (57633240-57633006)
	499-730, gnl\|Hg17\|chr2 (217350781-217351015)
	499-730, gnl\|Mm7\|chr1 (73090942-73091173)

	869-1397, gnl\|bosTau2\|chr2 (57629653-57629128)
	869-1397, gnl\|Hg17\|chr2 (217354166-217354665)
	869-1397, gnl\|Mm7\|chr1 (73093856-73094333)

	ute (1.06228)
	amn (0.417711)
	fli (0.405762)
	pla (0.267344)
	eep (0.245128)
	cli (0.152812)
	hyp (0.142837)
	nca (0.136874)
	cov (0.132153)
	ese (0.126502)
	jca (0.11396)
	eje (0.0988338)