Non-Coding RNA Search

Ss1.1-Ova1-OVR010017C04.5

Sequence:


               
               GAGGCGGCTGTGCTGCTTCAGCTACCGGACCGCGGCGGCGACGACGAAGACTGTGGCGGT
GACGGCGGCGAGAATAGGCGCTGCCCTCGGGGAGCAGCAGAGGGGTCTGCGGCCGCTCGC
ACCGCTGCAGAGGGGCCGGCCGGGCGTGGAGCGGAGCAGCTGCGCCACGGGTGGCATTGT
GTGTCCCGGAGAGCAGGAGCGAGTCCCCGAAGAGCGGCGAGGCTGAGCCCAGAGCCCTGG
GTATCTCCTTCGGCAGGGAAGACTGCCTTCCCCCTGCTTCAGGCTGCTGAGCCCTGAGCC
CCGCTCAGAATGGAAGCCATCGCCAAGTATGACTTCAAAGCCACCGCAGACGACGAGCTG
AGCTTCAAAAGGGGGGACATCCTCAAGGTTTTGAATGAAGAATGTGATCAGAACTGGTAC
AAAGCAGAGCTCAATGGGAAAGATGGCTTCATCCCCAAGAACTACATAGAAATGAAACCA
CACCCGTGGTTTTTTGGCAAAATCCCCAGAGCCAAGGCAGAAGAAATGCTTAGCAAACAG
CGGCACGATGGGGCCTTTCTCATCCGTGAGAGCGAGAGCGCTCCTGGGGATTTCTCCCTC
TCTGTCAAGTTTGGCAATGATGTGCAGCACTTCAAGGTGCTCCGGGACGGCGCTGGCAAG
TACTTCCTCTGGGTGGTGAAGTTCAATTCTTTGAATGAGCTGGTAGATTATCACAGATCT
ACATCCGTCTCCAGAAACCAGCAGATATTCCTCCGGGACATAGAACAGGTGCCACAGCAA
CCGACATACGTCCAGGCCCTCTTTGACTTTGACCCCCAGGAGGATGGTGAGCTGGGCTTC
CGTCGGGGAGACTTTATCCACGTCATGGATAACTCGGACCCCAACTGGTGGAAGGGGGCT
TGCCACGGGCAGACCGGCATGTTTCCGCGCAATTACGTCACCCCTGTGAACCGGAACGTC
TAAGAGTCAAGAGAAGATTATTTAAAGAAAATGAAGAATTTTAAACACGTGCAAAAGAAT
TAAACCCATGAGCTGCCTCTAACAGCAGCCTGTGAGGGAGCTCGGAACCCCTGGCTGGGT
CACCTGGTGACCCTCTCACTTCGGTTGGAACTCGGGGGGGTGGGCGGGGGCGTTGGATAT
AATGCCAAAACTTACCTATAAATTAAGAAGAGTTTTTATTACAAATTTTCACCGCTGCTC
CTCCTCCTCCTTTGTCCTTTTTTCATCCTTTTTCTCTTCTGTCCATCAGTGCATGACGTT
CAATGCCGCATATAGTCCTAGCTGTTGCCAATAATAAAAGAAAAGAAACCACGTGGGCTG
ATATTTTCTCTATGCAAAATGTCTGTTTTAGCTGGAACAACAGAAAGAAGAACAGCCGCT
TCCATGTCCCGCCTGTGCACTCGGACAGCGGGCGGGAGCGGGAGGCCCGTGCTGCTCAGC
TTCTGCCGGGGGAGCGGGGGGAGCAGGGCCGGCCCCCTCCCAGCCCACCCCACGTGTGGA
CGTGGACTGGGGTGGCGGAGGGGGTGGCGCCCCTCGGGGCTTCCTGCAGGCCGGGCCCTA
ACCTGTGTCCCTTTCCACGTGGTTTTCCCTCCAAGTGGTGTTTTGAGCATGTTGTTTTTC
ATAGTGCCTTTTGCCTTATTTCAAGGGTTGCTTATGAGTGGTGTTTTTTATTTGTTTTGT
TTTAAAATAAGTTAAAGACAGTCAGCCAATTTGTCTCCTACTCTGTGTAAATATTTTTCC
CCAGGGGGAGGGGAAGGCAGGGTAGAGACAGGAGACGCGGGAAGGTGTGGGCGTCCTGCC
TGTGCGCAGCCGGAGTCTCGGAGGCTCAGCTTTAATTCTTGTGGCCCCGCAGGTTCAGGG
AGCCGGAGCCCTGCCGTCTGGAGTCGCTGCCCGGGGTGCAGAGTGGCCGGGGCCCAGCCT
CCCCACATCTGACCAGATCTGGCTGAAAGGGGCTCAGGGTCCCTGACCTTGTGCTCTCAG
GTGTTGCCTGCCCCTCCTTGGCCCCAGACAGCCCCCGACGCCAGCCTCTGGAGCCAGCAA
GTTTCAAACGCAGGAAAGCCTGAGACGGCGAAGCCATATCCGGTTCTGCCATCCTCCTAC
GCTGGGAGGGAAAATGCGAGTTTTCCCGTGGTTTTTCTTGCTCTGAAAGCTAGGCTTTCA
CCCCCTTGTGTCCCCTCCCTGAGCTGCCCAGGTGAGCTCAGGGCAGCGCGCAAGGAGCAG
TCGGGTGGTTTCTCACGTCTCCGTTCACAGCAGGCTCTGCCCGCAGCCGCTCCACCCAAG
CCCCTGAAAAGGAAGTGTCTCCGGGACGCAGGGACAGGTGGACGGGAAGCTCGCACGTCT
GAGTCCGTGGCAAAGCTCTTTCTGTCGTCTCCTGTCGGCTTCTTGTCCCTCGTAGTGATG
TGCCTGTAAACTTCCTCTCCCCCCCGCTCCGCCCCGTCCCCTTCCCACGACAAAAACGGG
GCTGCTGGGTGTTGGCGACGGCCTTGGCTTCTCAGGCGGACGGTCAGCATCTCCCCTGGA
CTCTGGTTATGGGGACGGACTTGGCCCCAAGGGCTCGGAGGCCCAGGAGGCTGCTCCCCT
GGACGGAGCGCCCCCCTCTCCCCGCCCCCTCCGCTCGCTGCTCCTTCCTCGCTGATGATA
AAAGGAATCGCTGGCATTCTGCACCTGGACCATTTGATTGTTTTATTTTGGAATTGGTGT
ATATCATGAAGCCTTGCAGAACTAAGTTTTGTGTGTATATATTTAAAAGAAAATCAGTGT
TTAAATAAAAAGACCTATGTACTTAATCCTTTAACTCCGCGGATAGCATTTGGTAGGTAG
TGATTAACTGTGAATAATAAACATACAGTGAATTCTTCAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGCGGCTGTGCTGCTTCAGCTACCGGACCGCGGCGGCGACGACGAAGACTGTGGCGGT
GACGGCGGCGAGAATAGGCGCTGCCCTCGGGGAGCAGCAGAGGGGTCTGCGGCCGCTCGC
ACCGCTGCAGAGGGGCCGGCCGGGCGTGGAGCGGAGCAGCTGCGCCACGGGTGGCATTGT
GTGTCCCGGAGAGCAGGAGCGAGTCCCCGAAGAGCGGCGAGGCTGAGCCCAGAGCCCTGG
GTATCTCCTTCGGCAGGGAAGACTGCCTTCCCCCTGCTTCAGGCTGCTGAGCCCTGAGCC
CCGCTCAGAATGGAAGCCATCGCCAAGTATGACTTCAAAGCCACCGCAGACGACGAGCTG
AGCTTCAAAAGGGGGGACATCCTCAAGGTTTTGAATGAAGAATGTGATCAGAACTGGTAC
AAAGCAGAGCTCAATGGGAAAGATGGCTTCATCCCCAAGAACTACATAGAAATGAAACCA
CACCCGTGGTTTTTTGGCAAAATCCCCAGAGCCAAGGCAGAAGAAATGCTTAGCAAACAG
CGGCACGATGGGGCCTTTCTCATCCGTGAGAGCGAGAGCGCTCCTGGGGATTTCTCCCTC
TCTGTCAAGTTTGGCAATGATGTGCAGCACTTCAAGGTGCTCCGGGACGGCGCTGGCAAG
TACTTCCTCTGGGTGGTGAAGTTCAATTCTTTGAATGAGCTGGTAGATTATCACAGATCT
ACATCCGTCTCCAGAAACCAGCAGATATTCCTCCGGGACATAGAACAGGTGCCACAGCAA
CCGACATACGTCCAGGCCCTCTTTGACTTTGACCCCCAGGAGGATGGTGAGCTGGGCTTC
CGTCGGGGAGACTTTATCCACGTCATGGATAACTCGGACCCCAACTGGTGGAAGGGGGCT
TGCCACGGGCAGACCGGCATGTTTCCGCGCAATTACGTCACCCCTGTGAACCGGAACGTC
TAAGAGTCAAGAGAAGATTATTTAAAGAAAATGAAGAATTTTAAACACGTGCAAAAGAAT
TAAACCCATGAGCTGCCTCTAACAGCAGCCTGTGAGGGAGCTCGGAACCCCTGGCTGGGT
CACCTGGTGACCCTCTCACTTCGGTTGGAACTCGGGGGGGTGGGCGGGGGCGTTGGATAT
AATGCCAAAACTTACCTATAAATTAAGAAGAGTTTTTATTACAAATTTTCACCGCTGCTC
CTCCTCCTCCTTTGTCCTTTTTTCATCCTTTTTCTCTTCTGTCCATCAGTGCATGACGTT
CAATGCCGCATATAGTCCTAGCTGTTGCCAATAATAAAAGAAAAGAAACCACGTGGGCTG
ATATTTTCTCTATGCAAAATGTCTGTTTTAGCTGGAACAACAGAAAGAAGAACAGCCGCT
TCCATGTCCCGCCTGTGCACTCGGACAGCGGGCGGGAGCGGGAGGCCCGTGCTGCTCAGC
TTCTGCCGGGGGAGCGGGGGGAGCAGGGCCGGCCCCCTCCCAGCCCACCCCACGTGTGGA
CGTGGACTGGGGTGGCGGAGGGGGTGGCGCCCCTCGGGGCTTCCTGCAGGCCGGGCCCTA
ACCTGTGTCCCTTTCCACGTGGTTTTCCCTCCAAGTGGTGTTTTGAGCATGTTGTTTTTC
ATAGTGCCTTTTGCCTTATTTCAAGGGTTGCTTATGAGTGGTGTTTTTTATTTGTTTTGT
TTTAAAATAAGTTAAAGACAGTCAGCCAATTTGTCTCCTACTCTGTGTAAATATTTTTCC
CCAGGGGGAGGGGAAGGCAGGGTAGAGACAGGAGACGCGGGAAGGTGTGGGCGTCCTGCC
TGTGCGCAGCCGGAGTCTCGGAGGCTCAGCTTTAATTCTTGTGGCCCCGCAGGTTCAGGG
AGCCGGAGCCCTGCCGTCTGGAGTCGCTGCCCGGGGTGCAGAGTGGCCGGGGCCCAGCCT
CCCCACATCTGACCAGATCTGGCTGAAAGGGGCTCAGGGTCCCTGACCTTGTGCTCTCAG
GTGTTGCCTGCCCCTCCTTGGCCCCAGACAGCCCCCGACGCCAGCCTCTGGAGCCAGCAA
GTTTCAAACGCAGGAAAGCCTGAGACGGCGAAGCCATATCCGGTTCTGCCATCCTCCTAC
GCTGGGAGGGAAAATGCGAGTTTTCCCGTGGTTTTTCTTGCTCTGAAAGCTAGGCTTTCA
CCCCCTTGTGTCCCCTCCCTGAGCTGCCCAGGTGAGCTCAGGGCAGCGCGCAAGGAGCAG
TCGGGTGGTTTCTCACGTCTCCGTTCACAGCAGGCTCTGCCCGCAGCCGCTCCACCCAAG
CCCCTGAAAAGGAAGTGTCTCCGGGACGCAGGGACAGGTGGACGGGAAGCTCGCACGTCT
GAGTCCGTGGCAAAGCTCTTTCTGTCGTCTCCTGTCGGCTTCTTGTCCCTCGTAGTGATG
TGCCTGTAAACTTCCTCTCCCCCCCGCTCCGCCCCGTCCCCTTCCCACGACAAAAACGGG
GCTGCTGGGTGTTGGCGACGGCCTTGGCTTCTCAGGCGGACGGTCAGCATCTCCCCTGGA
CTCTGGTTATGGGGACGGACTTGGCCCCAAGGGCTCGGAGGCCCAGGAGGCTGCTCCCCT
GGACGGAGCGCCCCCCTCTCCCCGCCCCCTCCGCTCGCTGCTCCTTCCTCGCTGATGATA
AAAGGAATCGCTGGCATTCTGCACCTGGACCATTTGATTGTTTTATTTTGGAATTGGTGT
ATATCATGAAGCCTTGCAGAACTAAGTTTTGTGTGTATATATTTAAAAGAAAATCAGTGT
TTAAATAAAAAGACCTATGTACTTAATCCTTTAACTCCGCGGATAGCATTTGGTAGGTAG
TGATTAACTGTGAATAATAAACATACAGTGAATTCTTCAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|55733273|emb|CAH93319.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|55733273|emb|CAH93319.1|

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               208-1806, - strand, RNAz p=0.997595
               

               
               493-610, - strand, RNAz p=0.602765
               

               
               1014-1132, + strand, RNAz p=0.69334

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               208-1806, - strand, RNAz p=0.997595
               

               
               493-610, - strand, RNAz p=0.602765
               

               
               1014-1132, + strand, RNAz p=0.69334

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_203506, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_203506, +

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               169-389, gnl|bosTau2|chr19 (51663072-51663290)
               

               
               169-389, gnl|Hg17|chr17 (70901442-70901225)
               

               
               169-389, gnl|Mm7|chr11 (115808402-115808195)
               


               
               486-610, gnl|bosTau2|chr19 (50749423-50749547)
               

               
               486-610, gnl|Hg17|chr17 (70833696-70833572)
               

               
               486-610, gnl|Mm7|chr11 (115758938-115758814)
               


               
               775-1460, gnl|bosTau2|chr19 (50753127-50753807)
               

               
               775-1460, gnl|Hg17|chr17 (70828232-70827530)
               

               
               775-1460, gnl|Mm7|chr11 (115755002-115754300)
               


               
               1509-1864, gnl|bosTau2|chr19 (50753816-50754186)
               

               
               1509-1864, gnl|Hg17|chr17 (70827470-70826764)
               

               
               1509-1864, gnl|Mm7|chr11 (115754291-115753916)
               


               
               1891-2859, gnl|bosTau2|chr19 (50754185-50755133)
               

               
               1891-2859, gnl|Hg17|chr17 (70826765-70825752)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               169-389, gnl|bosTau2|chr19 (51663072-51663290)
               

               
               169-389, gnl|Hg17|chr17 (70901442-70901225)
               

               
               169-389, gnl|Mm7|chr11 (115808402-115808195)
               


               
               486-610, gnl|bosTau2|chr19 (50749423-50749547)
               

               
               486-610, gnl|Hg17|chr17 (70833696-70833572)
               

               
               486-610, gnl|Mm7|chr11 (115758938-115758814)
               


               
               775-1460, gnl|bosTau2|chr19 (50753127-50753807)
               

               
               775-1460, gnl|Hg17|chr17 (70828232-70827530)
               

               
               775-1460, gnl|Mm7|chr11 (115755002-115754300)
               


               
               1509-1864, gnl|bosTau2|chr19 (50753816-50754186)
               

               
               1509-1864, gnl|Hg17|chr17 (70827470-70826764)
               

               
               1509-1864, gnl|Mm7|chr11 (115754291-115753916)
               


               
               1891-2859, gnl|bosTau2|chr19 (50754185-50755133)
               

               
               1891-2859, gnl|Hg17|chr17 (70826765-70825752)

Expressed library(ies): 33 entry(ies)

More info

Expressed library(ies): 33 entry(ies)

Help | Less info


               
               lnt (0.853849)
               

               
               pla (0.534688)
               

               
               pro (0.512033)
               

               
               fhi (0.508733)
               

               
               cly (0.482567)
               

               
               ecc (0.46014)
               

               
               sto (0.359648)
               

               
               mcp (0.341297)
               

               
               cty (0.31224)
               

               
               jej (0.296765)
               

               
               csk (0.281492)
               

               
               cga (0.279096)
               

               
               che (0.272628)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

Expressed library(ies): 33 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.853849)
               

               
               pla (0.534688)
               

               
               pro (0.512033)
               

               
               fhi (0.508733)
               

               
               cly (0.482567)
               

               
               ecc (0.46014)
               

               
               sto (0.359648)
               

               
               mcp (0.341297)
               

               
               cty (0.31224)
               

               
               jej (0.296765)
               

               
               csk (0.281492)
               

               
               cga (0.279096)
               

               
               che (0.272628)
               

               
               ece (0.229305)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               fco (0.157208)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               ldo (0.0970026)

	208-1806, - strand, RNAz p=0.997595
	493-610, - strand, RNAz p=0.602765
	1014-1132, + strand, RNAz p=0.69334

	169-389, gnl\|bosTau2\|chr19 (51663072-51663290)
	169-389, gnl\|Hg17\|chr17 (70901442-70901225)
	169-389, gnl\|Mm7\|chr11 (115808402-115808195)

	486-610, gnl\|bosTau2\|chr19 (50749423-50749547)
	486-610, gnl\|Hg17\|chr17 (70833696-70833572)
	486-610, gnl\|Mm7\|chr11 (115758938-115758814)

	775-1460, gnl\|bosTau2\|chr19 (50753127-50753807)
	775-1460, gnl\|Hg17\|chr17 (70828232-70827530)
	775-1460, gnl\|Mm7\|chr11 (115755002-115754300)

	1509-1864, gnl\|bosTau2\|chr19 (50753816-50754186)
	1509-1864, gnl\|Hg17\|chr17 (70827470-70826764)
	1509-1864, gnl\|Mm7\|chr11 (115754291-115753916)

	1891-2859, gnl\|bosTau2\|chr19 (50754185-50755133)
	1891-2859, gnl\|Hg17\|chr17 (70826765-70825752)

	lnt (0.853849)
	pla (0.534688)
	pro (0.512033)
	fhi (0.508733)
	cly (0.482567)
	ecc (0.46014)
	sto (0.359648)
	mcp (0.341297)
	cty (0.31224)
	jej (0.296765)
	csk (0.281492)
	cga (0.279096)
	che (0.272628)
	ece (0.229305)
	hea (0.204499)
	fli (0.202881)
	nlu (0.191681)
	cmu (0.186393)
	fty (0.17584)
	ill (0.175593)
	fbs (0.175346)
	cki (0.165235)
	csp (0.161186)
	fco (0.157208)
	cag (0.151194)
	pty (0.142714)
	cst (0.140036)
	lyg (0.133103)
	ese (0.126502)
	eru (0.120048)
	ebs (0.118301)
	jca (0.11396)
	ldo (0.0970026)