Non-Coding RNA Search

Ss1.1-Ova1-OVR010017D03.5

Sequence:


               
               CAATGCTGTGCGGCTGAGTGCCTCCGAGCCCGCGGGGACGCTGCGGGGGGACCCCGGCTG
AGGCGGCGGCGGCGACGTGGGCTGCGGCGGGCCCGCGGCGTCGGGCGGTGCGGATGTCGG
GCTGGGCGGACGAACGCGGCGGCGAGGGCGACGGGCGCATCTACGTGGGGAACCTTCCGA
CAGACGTGCGCGAGAAGGACCTGGAGGACCTGTTCTACAAGTACGGCCGTATCCGCGAGA
TCGAGCTCAAGAATCGGCACGGCCTCGTGCCCTTCGCCTTCGTGCGCTTTGAGGACCCCC
GAGATGCTGAAGATGCCATTTATGGAAGGAACGGTTATGATTATGGCCAGTGTCGCCTTC
GTGTGGAGTTCCCCAGGACTTATGGAGGTCGGGGTGGGTGGCCCCGTGGTGGGAGGAATG
GGCCTCCTACAAGAAGATCTGATTTCCGAGTTCTTGTTTCAGGACTTCCTCCATCAGGCA
GCTGGCAGGACCTGAAAGATCACATGCGAGAAGCTGGGGACGTCTGTTACGCGGATGTAC
AGAAAGATGGAATGGGGATGGTTGAATATCTCAGAAAAGAAGACATGGAATATGCCCTGC
GTAAACTGGATGACACCAAATTCCGCTCTCATGAGGGTGAAACTTCCTACATCCGAGTTT
ATCCAGAGAGAAGCACCAGCTATGGCTACTCACGGTCTCGGTCTGGGTCAAGGGGCCGTG
ATTCTCCATACCAAAGCAGGGGTTCCCCACACTACTTCTCTCCTTTCAGACCCTACTGAG
ACAGGTGATGGGAATTTTTTTCTTTATTTTTTAGGTGAACTGAGCTGCTTTATGCTCAGA
ATCTACATTCCAGATTAATGATTTAGTGTCTTAGGAAATTTTTTTAATTTTTTTTTAAGG
AAATAAAACTACATAATTTCTACCAGGGCCATATTAGCAGTAACACATTTTTAACTGCAG
AAATGGTGGTTTTGGTTCAGAAACAAGTTGTATATTTTTCACCCCTGATTATGGGAAAAA
AAATCAGTGCTGTATCTTTGTGGGTTGCTCTTCTATGGAGATCAGCAGTTACTGTGACTG
AGTTGGCCCATTCTGTTTAGAAATATATTTTAAACGTTTAGTAATTGATGTGTGTGGTTG
TCTTTGATTAAGTTCATAGTTTTCACCAAAGAGGCACACTGATAAATTAAAACAAAAAAA
TCAGAGTTCCTTGGTGGTGCACTGGGTTAAGGATCTGGTGTTGTCACTGCTGTTCCTGAC
CCTGGATCTTTTGTACGCCATGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAATGCTGTGCGGCTGAGTGCCTCCGAGCCCGCGGGGACGCTGCGGGGGGACCCCGGCTG
AGGCGGCGGCGGCGACGTGGGCTGCGGCGGGCCCGCGGCGTCGGGCGGTGCGGATGTCGG
GCTGGGCGGACGAACGCGGCGGCGAGGGCGACGGGCGCATCTACGTGGGGAACCTTCCGA
CAGACGTGCGCGAGAAGGACCTGGAGGACCTGTTCTACAAGTACGGCCGTATCCGCGAGA
TCGAGCTCAAGAATCGGCACGGCCTCGTGCCCTTCGCCTTCGTGCGCTTTGAGGACCCCC
GAGATGCTGAAGATGCCATTTATGGAAGGAACGGTTATGATTATGGCCAGTGTCGCCTTC
GTGTGGAGTTCCCCAGGACTTATGGAGGTCGGGGTGGGTGGCCCCGTGGTGGGAGGAATG
GGCCTCCTACAAGAAGATCTGATTTCCGAGTTCTTGTTTCAGGACTTCCTCCATCAGGCA
GCTGGCAGGACCTGAAAGATCACATGCGAGAAGCTGGGGACGTCTGTTACGCGGATGTAC
AGAAAGATGGAATGGGGATGGTTGAATATCTCAGAAAAGAAGACATGGAATATGCCCTGC
GTAAACTGGATGACACCAAATTCCGCTCTCATGAGGGTGAAACTTCCTACATCCGAGTTT
ATCCAGAGAGAAGCACCAGCTATGGCTACTCACGGTCTCGGTCTGGGTCAAGGGGCCGTG
ATTCTCCATACCAAAGCAGGGGTTCCCCACACTACTTCTCTCCTTTCAGACCCTACTGAG
ACAGGTGATGGGAATTTTTTTCTTTATTTTTTAGGTGAACTGAGCTGCTTTATGCTCAGA
ATCTACATTCCAGATTAATGATTTAGTGTCTTAGGAAATTTTTTTAATTTTTTTTTAAGG
AAATAAAACTACATAATTTCTACCAGGGCCATATTAGCAGTAACACATTTTTAACTGCAG
AAATGGTGGTTTTGGTTCAGAAACAAGTTGTATATTTTTCACCCCTGATTATGGGAAAAA
AAATCAGTGCTGTATCTTTGTGGGTTGCTCTTCTATGGAGATCAGCAGTTACTGTGACTG
AGTTGGCCCATTCTGTTTAGAAATATATTTTAAACGTTTAGTAATTGATGTGTGTGGTTG
TCTTTGATTAAGTTCATAGTTTTCACCAAAGAGGCACACTGATAAATTAAAACAAAAAAA
TCAGAGTTCCTTGGTGGTGCACTGGGTTAAGGATCTGGTGTTGTCACTGCTGTTCCTGAC
CCTGGATCTTTTGTACGCCATGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q52LD1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q52LD1_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               753-872, + strand, RNAz p=0.735007
               

               
               897-996, - strand, RNAz p=0.98163

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               753-872, + strand, RNAz p=0.735007
               

               
               897-996, - strand, RNAz p=0.98163

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_003769, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_003769, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-301, gnl|bosTau2|chr17 (14815071-14814767)
               

               
               1-301, gnl|Hg17|chr12 (119370245-119369945)
               

               
               1-301, gnl|Mm7|chr5 (114548001-114548332)
               


               
               634-1198, gnl|bosTau2|chr17 (14809165-14808600)
               

               
               634-1198, gnl|Hg17|chr12 (119362687-119362131)
               

               
               634-1198, gnl|Mm7|chr5 (114553407-114553977)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-301, gnl|bosTau2|chr17 (14815071-14814767)
               

               
               1-301, gnl|Hg17|chr12 (119370245-119369945)
               

               
               1-301, gnl|Mm7|chr5 (114548001-114548332)
               


               
               634-1198, gnl|bosTau2|chr17 (14809165-14808600)
               

               
               634-1198, gnl|Hg17|chr12 (119362687-119362131)
               

               
               634-1198, gnl|Mm7|chr5 (114553407-114553977)

Expressed library(ies): 41 entry(ies)

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Expressed library(ies): 41 entry(ies)

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               bla (0.87043)
               

               
               spl (0.859107)
               

               
               rec (0.692281)
               

               
               sug (0.636456)
               

               
               pgl (0.592417)
               

               
               nco (0.485201)
               

               
               mga (0.480615)
               

               
               cov (0.396458)
               

               
               ese (0.379507)
               

               
               sto (0.359648)
               

               
               mcp (0.341297)
               

               
               cje (0.330469)
               

               
               lin (0.291206)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               ebs (0.236602)
               

               
               med (0.232504)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               cki (0.165235)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 41 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.87043)
               

               
               spl (0.859107)
               

               
               rec (0.692281)
               

               
               sug (0.636456)
               

               
               pgl (0.592417)
               

               
               nco (0.485201)
               

               
               mga (0.480615)
               

               
               cov (0.396458)
               

               
               ese (0.379507)
               

               
               sto (0.359648)
               

               
               mcp (0.341297)
               

               
               cje (0.330469)
               

               
               lin (0.291206)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               thg (0.253582)
               

               
               tra (0.246184)
               

               
               ebs (0.236602)
               

               
               med (0.232504)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               cki (0.165235)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	753-872, + strand, RNAz p=0.735007
	897-996, - strand, RNAz p=0.98163

	1-301, gnl\|bosTau2\|chr17 (14815071-14814767)
	1-301, gnl\|Hg17\|chr12 (119370245-119369945)
	1-301, gnl\|Mm7\|chr5 (114548001-114548332)

	634-1198, gnl\|bosTau2\|chr17 (14809165-14808600)
	634-1198, gnl\|Hg17\|chr12 (119362687-119362131)
	634-1198, gnl\|Mm7\|chr5 (114553407-114553977)

	bla (0.87043)
	spl (0.859107)
	rec (0.692281)
	sug (0.636456)
	pgl (0.592417)
	nco (0.485201)
	mga (0.480615)
	cov (0.396458)
	ese (0.379507)
	sto (0.359648)
	mcp (0.341297)
	cje (0.330469)
	lin (0.291206)
	hyp (0.285673)
	fce (0.271592)
	kid (0.259471)
	ova (0.258264)
	thg (0.253582)
	tra (0.246184)
	ebs (0.236602)
	med (0.232504)
	nms (0.213858)
	tes (0.207814)
	fli (0.202881)
	col (0.195008)
	cmu (0.186393)
	nep (0.183925)
	ill (0.175593)
	fbs (0.175346)
	cki (0.165235)
	fat (0.147427)
	ski (0.146735)
	pty (0.142714)
	lnt (0.142308)
	csk (0.140746)
	cst (0.140036)
	ste (0.135208)
	ute (0.132784)
	ecc (0.115035)
	spc (0.113366)
	jej (0.0989218)