Non-Coding RNA Search

Ss1.1-Ova1-OVR010017D09.5

Sequence:


               
               TTTTCCCGTCACGCTCCGCGGCGCGGGCAGTTTGTAGCTAATGGCGGTTGCTTGGTCTCC
AAATAGTTGCAAAGGATGCTCCTCTACTAGCTGTGCATGTGGCGACAAGGGCAAGTGGAG
CGACTCCTTGCTGTTAGGCAAGCGGCTCTCAGAAGACTCTAGCCGCCAACAGCTGCTGCA
GAAGTGGGCGAGCATGTGGAGTTCCGTGAGCGAGGACGCGTCGGTGGCCTGCACGGAAAG
GACGCGGCGCGAGGAGGCTGCGAAGACCGCGGACGAGGAGGACAGGCCGCTGGTGTTTCT
GTGCTCTGGCTGCCGGCGGCCTCTGGGGGACTCCCTGAGCTGGGTGACGAGCCAGGAGGA
CACCAACTGCATCCTGCTGCGTTGTGTTTCCTCCAATGTTTCTGTGGATAAGGAGCAGAT
ACTGTCCAAGCGCAAAAATGAAAATGGTTGCATCCTGGAGGCTCTGTACTGTGCAGGATG
TTCACTCAGCCTTGGCTACGTGTACAGATGCACACCCAAGAACCTAGACTACAAGAGAGA
CTTGTTTTGCCTCAGTGTTGAGGCCATCGAAAGTTATATTTTAGGGTCCGCTGAAAAGCA
AATTGTGTCAGAAGATAAAGAGCTTTTTAATCTTGAAAGCAGAGTTGAAATAGAAAAATC
TCTAAAGCAGATGGAAGATGTTTTGAAAGCATTACAAACAAAGCTGTGGGAGGTTGAATC
AAAATTGTCCCTTACCAGTTGCGAAAGCTGAAGTCTCTTTTAAATTCCCCACTCTGGAGT
CCTCCGCCAATGGATAATTCTTCCATATGTAGCGATTCTTATTATAATTTACTTTTTTTA
GAACCAAAAGAATTTGAAGTGGTCCTGTGCATTGTATTCTCTCTCTTGTACCGATTGACT
GATCAAATGAGAAGAACGTAGAATGACCTTTCTGGATGTTTTTGATGGTAAAGAGGTGGT
TGTCTCCTAAATTCCAATTTTAGAGTCATGATACCTGTCGGAAGTGAAATTCAGTTTTTA
TTTTGGGTAACAAAGTGCCATGGTTTTCTCCTCTGTACCAAATCCACTCTTCTTTATTTC
CTATTTTTTTTAACTTTATTTCACCTTTAATGCTTGAACAACATTTAATGTCGAATGGTA
AGAAACTTAGAGGTTTTCCACCCACTGTGTGGCTGAATCTTCTCTGAAAACTAAGGCATA
CAACTCTTTGGAGAAACAGGTCAGTTGAGCTGTGTGTCAGAACTATTTGAAACTTGGTCC
AAGAGCCGAATGGCATGTATCCTAGTAGGGGTAGAATTCCGTTTGATCCTGTGTATTTAC
TACAGGATGCCCCCTAAATCTGACAAAATATCTACCAAAGGGAGTAACAGTCATCTCTGA
GGGTGGAATTCCCGGGGAAGTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCCCGTCACGCTCCGCGGCGCGGGCAGTTTGTAGCTAATGGCGGTTGCTTGGTCTCC
AAATAGTTGCAAAGGATGCTCCTCTACTAGCTGTGCATGTGGCGACAAGGGCAAGTGGAG
CGACTCCTTGCTGTTAGGCAAGCGGCTCTCAGAAGACTCTAGCCGCCAACAGCTGCTGCA
GAAGTGGGCGAGCATGTGGAGTTCCGTGAGCGAGGACGCGTCGGTGGCCTGCACGGAAAG
GACGCGGCGCGAGGAGGCTGCGAAGACCGCGGACGAGGAGGACAGGCCGCTGGTGTTTCT
GTGCTCTGGCTGCCGGCGGCCTCTGGGGGACTCCCTGAGCTGGGTGACGAGCCAGGAGGA
CACCAACTGCATCCTGCTGCGTTGTGTTTCCTCCAATGTTTCTGTGGATAAGGAGCAGAT
ACTGTCCAAGCGCAAAAATGAAAATGGTTGCATCCTGGAGGCTCTGTACTGTGCAGGATG
TTCACTCAGCCTTGGCTACGTGTACAGATGCACACCCAAGAACCTAGACTACAAGAGAGA
CTTGTTTTGCCTCAGTGTTGAGGCCATCGAAAGTTATATTTTAGGGTCCGCTGAAAAGCA
AATTGTGTCAGAAGATAAAGAGCTTTTTAATCTTGAAAGCAGAGTTGAAATAGAAAAATC
TCTAAAGCAGATGGAAGATGTTTTGAAAGCATTACAAACAAAGCTGTGGGAGGTTGAATC
AAAATTGTCCCTTACCAGTTGCGAAAGCTGAAGTCTCTTTTAAATTCCCCACTCTGGAGT
CCTCCGCCAATGGATAATTCTTCCATATGTAGCGATTCTTATTATAATTTACTTTTTTTA
GAACCAAAAGAATTTGAAGTGGTCCTGTGCATTGTATTCTCTCTCTTGTACCGATTGACT
GATCAAATGAGAAGAACGTAGAATGACCTTTCTGGATGTTTTTGATGGTAAAGAGGTGGT
TGTCTCCTAAATTCCAATTTTAGAGTCATGATACCTGTCGGAAGTGAAATTCAGTTTTTA
TTTTGGGTAACAAAGTGCCATGGTTTTCTCCTCTGTACCAAATCCACTCTTCTTTATTTC
CTATTTTTTTTAACTTTATTTCACCTTTAATGCTTGAACAACATTTAATGTCGAATGGTA
AGAAACTTAGAGGTTTTCCACCCACTGTGTGGCTGAATCTTCTCTGAAAACTAAGGCATA
CAACTCTTTGGAGAAACAGGTCAGTTGAGCTGTGTGTCAGAACTATTTGAAACTTGGTCC
AAGAGCCGAATGGCATGTATCCTAGTAGGGGTAGAATTCCGTTTGATCCTGTGTATTTAC
TACAGGATGCCCCCTAAATCTGACAAAATATCTACCAAAGGGAGTAACAGTCATCTCTGA
GGGTGGAATTCCCGGGGAAGTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|8118225|gb|AAF72945.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|8118225|gb|AAF72945.1|

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               4-385, gnl|bosTau2|chr1 (39560-39182)
               

               
               4-385, gnl|Hg17|chr21 (32573230-32572861)
               

               
               4-385, gnl|Mm7|chr16 (90777270-90776925)
               


               
               450-585, gnl|bosTau2|chr1 (31378-31243)
               

               
               450-585, gnl|Hg17|chr21 (32564712-32564577)
               

               
               450-585, gnl|Mm7|chr16 (90771660-90771526)
               


               
               669-1321, gnl|bosTau2|chr1 (27743-27098)
               

               
               669-1321, gnl|Hg17|chr21 (32563301-32562602)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-385, gnl|bosTau2|chr1 (39560-39182)
               

               
               4-385, gnl|Hg17|chr21 (32573230-32572861)
               

               
               4-385, gnl|Mm7|chr16 (90777270-90776925)
               


               
               450-585, gnl|bosTau2|chr1 (31378-31243)
               

               
               450-585, gnl|Hg17|chr21 (32564712-32564577)
               

               
               450-585, gnl|Mm7|chr16 (90771660-90771526)
               


               
               669-1321, gnl|bosTau2|chr1 (27743-27098)
               

               
               669-1321, gnl|Hg17|chr21 (32563301-32562602)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               tes (0.415628)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               ova (0.129132)
               

               
               tra (0.123092)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               ova (0.129132)
               

               
               tra (0.123092)

	4-385, gnl\|bosTau2\|chr1 (39560-39182)
	4-385, gnl\|Hg17\|chr21 (32573230-32572861)
	4-385, gnl\|Mm7\|chr16 (90777270-90776925)

	450-585, gnl\|bosTau2\|chr1 (31378-31243)
	450-585, gnl\|Hg17\|chr21 (32564712-32564577)
	450-585, gnl\|Mm7\|chr16 (90771660-90771526)

	669-1321, gnl\|bosTau2\|chr1 (27743-27098)
	669-1321, gnl\|Hg17\|chr21 (32563301-32562602)

	tes (0.415628)
	eli (0.151814)
	spl (0.143184)
	ova (0.129132)
	tra (0.123092)