Non-Coding RNA Search

Ss1.1-Ova1-OVR010017E02.5

Sequence:


               
               TTCCCTTTCGATGTGGACGCGCTGTTCCCGGAGCGGATCACGGTGCTGGACCAGCACCTG
CGGCCCCCGGCCCGTCGACCCGGAACCACAACGCCGGCCCGTGTTGATCTGCAGCAGCAA
ATTATGACCATTATAGATGAACTGGGCAAGGCTTCTGCTAAGGCCCAGCATCTTCCTGCT
CCCATCACCAGTGCGTCAAGGATGCAGAGTAACCGCCACGTTATGTATATACTCAAAGAT
ACTTCAGCTCGACCGGCTGGAAAAGGAGCCATTGTTGGCTTCCTTAAAGTTGGCTATAAA
AAACTCTTTGTACTGGATGATCGTGAGGCTCACAATGAGGTAGAACCACTTTGCATCTTG
GACTTTTACATCCATGAGTCACTTCAACGCCACGGCCATGGACGAGAACTCTTCCAGCAT
ATGTTGCAGAAGGAGCGAGTTGAACCACACCAGCTGGCTATTGATCGACCCTCACAGAAG
CTGCTGAAATTCCTGAACAAACACTACAACCTGGAGACCACAGTCCCACAGGTGAACAAC
TTTGTGATCTTTGAAGGCTTCTTTGCCCATCAGCACCGGCCCCCTGCTACCTCTCTGAGG
GCAACTCGGCGCTCTCGTGCTGCTGCGGTCGACCCTGTGCCCGCGGCTCCAGCACGGAAA
CTGCCGCCCAAGAGAGCAGAGGGAGACATAAAGCCATACTCCTCTAGTGACCGAGAATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCCTTTCGATGTGGACGCGCTGTTCCCGGAGCGGATCACGGTGCTGGACCAGCACCTG
CGGCCCCCGGCCCGTCGACCCGGAACCACAACGCCGGCCCGTGTTGATCTGCAGCAGCAA
ATTATGACCATTATAGATGAACTGGGCAAGGCTTCTGCTAAGGCCCAGCATCTTCCTGCT
CCCATCACCAGTGCGTCAAGGATGCAGAGTAACCGCCACGTTATGTATATACTCAAAGAT
ACTTCAGCTCGACCGGCTGGAAAAGGAGCCATTGTTGGCTTCCTTAAAGTTGGCTATAAA
AAACTCTTTGTACTGGATGATCGTGAGGCTCACAATGAGGTAGAACCACTTTGCATCTTG
GACTTTTACATCCATGAGTCACTTCAACGCCACGGCCATGGACGAGAACTCTTCCAGCAT
ATGTTGCAGAAGGAGCGAGTTGAACCACACCAGCTGGCTATTGATCGACCCTCACAGAAG
CTGCTGAAATTCCTGAACAAACACTACAACCTGGAGACCACAGTCCCACAGGTGAACAAC
TTTGTGATCTTTGAAGGCTTCTTTGCCCATCAGCACCGGCCCCCTGCTACCTCTCTGAGG
GCAACTCGGCGCTCTCGTGCTGCTGCGGTCGACCCTGTGCCCGCGGCTCCAGCACGGAAA
CTGCCGCCCAAGAGAGCAGAGGGAGACATAAAGCCATACTCCTCTAGTGACCGAGAATTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q5SQI1_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q5SQI1_HUMAN

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               1-101, gnl|bosTau2|chr23 (20867910-20867810)
               

               
               1-101, gnl|canFam2|chr12 (3443220-3443335)
               

               
               1-101, gnl|dasNov1|scaffold_82003 (1246-1134)
               

               
               1-101, gnl|echTel1|scaffold_315780 (48461-48576)
               

               
               1-101, gnl|fr1|chrUn (71134249-71134370)
               

               
               1-101, gnl|hg17|chr6 (30702597-30702712)
               

               
               1-101, gnl|Hg17|chr6 (30702648-30702748)
               

               
               1-101, gnl|loxAfr1|scaffold_14465 (30790-30675)
               

               
               1-101, gnl|mm7|chr17 (34014256-34014141)
               

               
               1-101, gnl|Mm7|chr17 (34014203-34014103)
               

               
               1-101, gnl|monDom2|scaffold_42 (18685360-18685241)
               

               
               1-101, gnl|oryCun1|scaffold_204107 (77773-77888)
               

               
               1-101, gnl|panTro1|chr5 (31160815-31160930)
               

               
               1-101, gnl|rheMac2|chr4 (30205265-30205380)
               

               
               1-101, gnl|rn3|chr20 (2992599-2992714)
               


               
               315-429, gnl|bosTau2|chr23 (20866524-20866410)
               

               
               315-429, gnl|Hg17|chr6 (30703787-30703901)
               

               
               315-429, gnl|Mm7|chr17 (34013141-34013027)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-101, gnl|bosTau2|chr23 (20867910-20867810)
               

               
               1-101, gnl|canFam2|chr12 (3443220-3443335)
               

               
               1-101, gnl|dasNov1|scaffold_82003 (1246-1134)
               

               
               1-101, gnl|echTel1|scaffold_315780 (48461-48576)
               

               
               1-101, gnl|fr1|chrUn (71134249-71134370)
               

               
               1-101, gnl|hg17|chr6 (30702597-30702712)
               

               
               1-101, gnl|Hg17|chr6 (30702648-30702748)
               

               
               1-101, gnl|loxAfr1|scaffold_14465 (30790-30675)
               

               
               1-101, gnl|mm7|chr17 (34014256-34014141)
               

               
               1-101, gnl|Mm7|chr17 (34014203-34014103)
               

               
               1-101, gnl|monDom2|scaffold_42 (18685360-18685241)
               

               
               1-101, gnl|oryCun1|scaffold_204107 (77773-77888)
               

               
               1-101, gnl|panTro1|chr5 (31160815-31160930)
               

               
               1-101, gnl|rheMac2|chr4 (30205265-30205380)
               

               
               1-101, gnl|rn3|chr20 (2992599-2992714)
               


               
               315-429, gnl|bosTau2|chr23 (20866524-20866410)
               

               
               315-429, gnl|Hg17|chr6 (30703787-30703901)
               

               
               315-429, gnl|Mm7|chr17 (34013141-34013027)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               elu (0.770713)
               

               
               ese (0.126502)
               

               
               eru (0.120048)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.770713)
               

               
               ese (0.126502)
               

               
               eru (0.120048)

	1-101, gnl\|bosTau2\|chr23 (20867910-20867810)
	1-101, gnl\|canFam2\|chr12 (3443220-3443335)
	1-101, gnl\|dasNov1\|scaffold_82003 (1246-1134)
	1-101, gnl\|echTel1\|scaffold_315780 (48461-48576)
	1-101, gnl\|fr1\|chrUn (71134249-71134370)
	1-101, gnl\|hg17\|chr6 (30702597-30702712)
	1-101, gnl\|Hg17\|chr6 (30702648-30702748)
	1-101, gnl\|loxAfr1\|scaffold_14465 (30790-30675)
	1-101, gnl\|mm7\|chr17 (34014256-34014141)
	1-101, gnl\|Mm7\|chr17 (34014203-34014103)
	1-101, gnl\|monDom2\|scaffold_42 (18685360-18685241)
	1-101, gnl\|oryCun1\|scaffold_204107 (77773-77888)
	1-101, gnl\|panTro1\|chr5 (31160815-31160930)
	1-101, gnl\|rheMac2\|chr4 (30205265-30205380)
	1-101, gnl\|rn3\|chr20 (2992599-2992714)

	315-429, gnl\|bosTau2\|chr23 (20866524-20866410)
	315-429, gnl\|Hg17\|chr6 (30703787-30703901)
	315-429, gnl\|Mm7\|chr17 (34013141-34013027)