Non-Coding RNA Search

Ss1.1-Ova1-OVR010017F09.5

Sequence:


               
               GATGGCGCTGACGGCGGTGTTGCGCCTCCCGGCGCGCGCCCTGCTCCGCCCTTGGGCCCT
GCTCCGCGGCGTGGCCCTCGGACGGACGGAGGCTGCAGCGGGCATCAGGAACGGCGCGCG
GCGCTTCGGGAGCCAGCACGTCCTGGTGGAGCCGGCCGCGGCCGCAGGGGTCGCTGTGAT
GAAGCTCAGGAACCCCCCGGTGAACAGCCTCAGCCTGGAGCTGCTGACGGAGCTCGTCAT
CAGCCTGGAGAAGCTGGAGAACGACAAGGCCTTCCGCGGTGTCATCCTGACATCGGACTG
CCCCAGTGTCTTCTCCAGCGGCCTGGACCTGAGGGAGCTGTGCGGGAGGAACCCGGCCCG
CTACGCCGAGTTCTGGAAGGCCGTGCAGGAGATGTGGTTGCGGTTCTACCTGTCCAACCT
GGTGCTGGTCGCCGCCATCAACGGAGCCTGCCCGGCTGGGGGCTGCCTCCTCTCCCTCAC
CTGCGACTACCGGGTCCTGGCTGACAACCCCAAGTACCTCATGGGGCTGAATGAGACCCT
GCTGGGCATTGTCGCCCCCTTCTGGTTCAAAGACAGCATCATGAACACCATCGGGCATCG
CGCCACTGAGCAGGCCTTACAGCTGGGGTCGCTCTTGCCACCAGCAGAGGCCCTCCAGGT
GGGCATGGTGGACCAGGTGGTGCCTGAGGACCAGCTCCTGAGCACCGCGCTCTCGGTGAT
GGCCAAGTGGCTGGCTGTTCCAGATCACGCGCGGCAGCTAACCAAGAGCATGATCCGCCA
GGCCACGGCAGACCGCCTGCTGAAGCAGCGCGACGCCGACATCCAGAACTTCGTCAGCTT
CATCTCCAAAGACGCCATCCAAAAGTCCCTGCAGACGTACTTAGAAAAGCTCAAACAAAA
GAAAGGCTAAGGGCCCGGTGGCCCCTGCACCCTTCTGGGGGGCCCTGTGGTCCCAAGGGA
TCTAAATAAGGTACTTTGCCGCATAGAAGTAATTGCAGCTTTGTTTTTCTGATCCTCCTA
GAAGACCCTGTTCCTCCCAGCTACAGCCCCAAGGCTGGTCCCCACCGGAGTGCCTTTTGT
GCCTGGGGGGTGGGCAGGGGTCGCAACTGGCAAGCAGTGTCTTGATCCGGGCATCGTTAA
CTGGCAGGGGGTGCCTTCTGGACCCCCATGATGTCACCAGTGTCTCCTCTGCCAGAGCTG
AATAAAGTGCTTGGCTTTCCCAAAAAAAAAAAAAAAATGCCTGATTGCTGGAGGCAGGAG
GCCAGGGAGTTGTGGGCCCTGACAAGTCACCCAAAACCCCGCCAGGGGAAAGGTCTTGCA
CCACTTTGGGGTGGAAGGCGTGTTCGGAGAAGTGGGGGTGACCTGGAGAGGGATGAGGGA
GGCATTTCTTGCGAGATGTTTTACCTTGCTAGTGTCCTAATTCTCACGTTGGAAAGATCT
AGCAAGAAAAGCTTGTCCAAACTTCTGAAACCAGGTCTTTCCCTCCCATGTAATTCAGGC
CATTTCCCAAATCCTGCCAAAGATGAGCTGCTTCGAAAACCAGAAACCTCAGGGGGCCCC
TGTCAGTAACCCTGTGTACCCAGCTCTGCTTGCTCCCAATTCTTAGGCAGTGAGCTTGGC
CGGGGCACGGGCCACTCTCCTCCCTGATGGCCCCTGCCCAGGAAGGCCTGGCCGAAGGGG
CCGTACCACAGTTGTGCTGTCGACTTCCAGGGGTATGACCTCGGCCCAGCCTACCTGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGGCGCTGACGGCGGTGTTGCGCCTCCCGGCGCGCGCCCTGCTCCGCCCTTGGGCCCT
GCTCCGCGGCGTGGCCCTCGGACGGACGGAGGCTGCAGCGGGCATCAGGAACGGCGCGCG
GCGCTTCGGGAGCCAGCACGTCCTGGTGGAGCCGGCCGCGGCCGCAGGGGTCGCTGTGAT
GAAGCTCAGGAACCCCCCGGTGAACAGCCTCAGCCTGGAGCTGCTGACGGAGCTCGTCAT
CAGCCTGGAGAAGCTGGAGAACGACAAGGCCTTCCGCGGTGTCATCCTGACATCGGACTG
CCCCAGTGTCTTCTCCAGCGGCCTGGACCTGAGGGAGCTGTGCGGGAGGAACCCGGCCCG
CTACGCCGAGTTCTGGAAGGCCGTGCAGGAGATGTGGTTGCGGTTCTACCTGTCCAACCT
GGTGCTGGTCGCCGCCATCAACGGAGCCTGCCCGGCTGGGGGCTGCCTCCTCTCCCTCAC
CTGCGACTACCGGGTCCTGGCTGACAACCCCAAGTACCTCATGGGGCTGAATGAGACCCT
GCTGGGCATTGTCGCCCCCTTCTGGTTCAAAGACAGCATCATGAACACCATCGGGCATCG
CGCCACTGAGCAGGCCTTACAGCTGGGGTCGCTCTTGCCACCAGCAGAGGCCCTCCAGGT
GGGCATGGTGGACCAGGTGGTGCCTGAGGACCAGCTCCTGAGCACCGCGCTCTCGGTGAT
GGCCAAGTGGCTGGCTGTTCCAGATCACGCGCGGCAGCTAACCAAGAGCATGATCCGCCA
GGCCACGGCAGACCGCCTGCTGAAGCAGCGCGACGCCGACATCCAGAACTTCGTCAGCTT
CATCTCCAAAGACGCCATCCAAAAGTCCCTGCAGACGTACTTAGAAAAGCTCAAACAAAA
GAAAGGCTAAGGGCCCGGTGGCCCCTGCACCCTTCTGGGGGGCCCTGTGGTCCCAAGGGA
TCTAAATAAGGTACTTTGCCGCATAGAAGTAATTGCAGCTTTGTTTTTCTGATCCTCCTA
GAAGACCCTGTTCCTCCCAGCTACAGCCCCAAGGCTGGTCCCCACCGGAGTGCCTTTTGT
GCCTGGGGGGTGGGCAGGGGTCGCAACTGGCAAGCAGTGTCTTGATCCGGGCATCGTTAA
CTGGCAGGGGGTGCCTTCTGGACCCCCATGATGTCACCAGTGTCTCCTCTGCCAGAGCTG
AATAAAGTGCTTGGCTTTCCCAAAAAAAAAAAAAAAATGCCTGATTGCTGGAGGCAGGAG
GCCAGGGAGTTGTGGGCCCTGACAAGTCACCCAAAACCCCGCCAGGGGAAAGGTCTTGCA
CCACTTTGGGGTGGAAGGCGTGTTCGGAGAAGTGGGGGTGACCTGGAGAGGGATGAGGGA
GGCATTTCTTGCGAGATGTTTTACCTTGCTAGTGTCCTAATTCTCACGTTGGAAAGATCT
AGCAAGAAAAGCTTGTCCAAACTTCTGAAACCAGGTCTTTCCCTCCCATGTAATTCAGGC
CATTTCCCAAATCCTGCCAAAGATGAGCTGCTTCGAAAACCAGAAACCTCAGGGGGCCCC
TGTCAGTAACCCTGTGTACCCAGCTCTGCTTGCTCCCAATTCTTAGGCAGTGAGCTTGGC
CGGGGCACGGGCCACTCTCCTCCCTGATGGCCCCTGCCCAGGAAGGCCTGGCCGAAGGGG
CCGTACCACAGTTGTGCTGTCGACTTCCAGGGGTATGACCTCGGCCCAGCCTACCTGCTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|62530384|ref|NP_001910.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62530384|ref|NP_001910.2|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               295-468, gnl|bosTau2|chr25 (5026238-5026411)
               

               
               295-468, gnl|Hg17|chr16 (2234555-2234382)
               

               
               295-468, gnl|Mm7|chr17 (22617002-22617200)
               


               
               624-829, gnl|bosTau2|chr23 (10516820-10516617)
               

               
               624-829, gnl|Hg17|chr16 (2233161-2230044)
               

               
               624-829, gnl|Mm7|chr17 (22618316-22619877)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               295-468, gnl|bosTau2|chr25 (5026238-5026411)
               

               
               295-468, gnl|Hg17|chr16 (2234555-2234382)
               

               
               295-468, gnl|Mm7|chr17 (22617002-22617200)
               


               
               624-829, gnl|bosTau2|chr23 (10516820-10516617)
               

               
               624-829, gnl|Hg17|chr16 (2233161-2230044)
               

               
               624-829, gnl|Mm7|chr17 (22618316-22619877)

Expressed library(ies): 31 entry(ies)

More info

Expressed library(ies): 31 entry(ies)

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               cty (0.936719)
               

               
               cki (0.660939)
               

               
               mas (0.630915)
               

               
               fty (0.527519)
               

               
               cli (0.458435)
               

               
               nms (0.427716)
               

               
               che (0.408942)
               

               
               cov (0.396458)
               

               
               nco (0.323468)
               

               
               jej (0.296765)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               pla (0.267344)
               

               
               jca (0.22792)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               cag (0.151194)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 31 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.936719)
               

               
               cki (0.660939)
               

               
               mas (0.630915)
               

               
               fty (0.527519)
               

               
               cli (0.458435)
               

               
               nms (0.427716)
               

               
               che (0.408942)
               

               
               cov (0.396458)
               

               
               nco (0.323468)
               

               
               jej (0.296765)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               pla (0.267344)
               

               
               jca (0.22792)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               cag (0.151194)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	295-468, gnl\|bosTau2\|chr25 (5026238-5026411)
	295-468, gnl\|Hg17\|chr16 (2234555-2234382)
	295-468, gnl\|Mm7\|chr17 (22617002-22617200)

	624-829, gnl\|bosTau2\|chr23 (10516820-10516617)
	624-829, gnl\|Hg17\|chr16 (2233161-2230044)
	624-829, gnl\|Mm7\|chr17 (22618316-22619877)

	cty (0.936719)
	cki (0.660939)
	mas (0.630915)
	fty (0.527519)
	cli (0.458435)
	nms (0.427716)
	che (0.408942)
	cov (0.396458)
	nco (0.323468)
	jej (0.296765)
	fce (0.271592)
	ssp (0.271039)
	pla (0.267344)
	jca (0.22792)
	nlu (0.191681)
	ill (0.175593)
	ton (0.1755)
	mcp (0.170648)
	cag (0.151194)
	cst (0.140036)
	hlv (0.139256)
	nmm (0.132802)
	ute (0.132784)
	cly (0.120642)
	eru (0.120048)
	ebs (0.118301)
	med (0.116252)
	ecc (0.115035)
	nbm (0.0993246)
	eje (0.0988338)
	ldo (0.0970026)