Ss1.1-Ova1-OVR010017G05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTAAGGCGTAGCGGACGCTGACGCTCTTCCCTCAGGAGTTGGAGACTTCCGAGCCA AAATGGCGGCAGGAACGGGCAAACATAAGCTGCTGAGTACTGGCCCTACAGAGCCATGGT CCATCCGAGAGAAGCTGTGTTTAGCGTCTTCAGTCATGAGGAGTGGAGATCAAAATTGGG TATCAGTTAGCAGAGCAATCAAGCCTTTTGCAGAGCCTGGCCGCCCTCCAGACTGGTTCT CTCAAAAACATTGTGCTTCCCAGTACTCAGAGCTTCTAGAGACCACTGAGACCCCAAAAC GGAAACGGGGTGAAAAGGGAGAAGTGGTAGAAACTGTTGAAGATGTCATTGTTCGGAAAC TGACTGCTGAACGAGTTGAGGAACTCAAGAAAGTGATAAAGGAAACCCAAGAAAAATATA GACGGCTGAAAAGAGATGCAGAACTAATTCAAGCTGGGCACATGGACAGCAGACTGGATG AGCTTTGCAATGACATTGCAATGAAAAAGAAGTTGGAGGAAGAGGAAGCTGAAGTTAAGA GGAAGGCTACCGATGCAGCATATCAGGCCCGTCAAGCAGTAAAAACACCCCCTCGGAGGT TACCTACTATGATGGTCCGCTCTCCCATAGATTCTGCCTCCCCAGGAGGTGATTATCCAC TTGGGGACTTGACTGCAACCACCATGGAAGAGGCTACCTCGGGGGTAAATGAGAGTGAAA TGGCTGTAACTTCTGGCCACCTGAGCAGTAAGTCAGCAGAGAGATGAGTGATGAGGAAAC CACTTTTGGCTTAGAGGCAGTTTCCTCTCTTGGTCTGAATGCTAAGGACTCAATTTACCA TGTTCTAGGCTCAAAGATAAAAATGGATCTAAAAACATTGAGGTTTTTGACATTTTTAGA GATAGGTAAAAAAATATATTAAGGAATTGTTTTTAAGTGTACTGGTCTTGTGAAATTCCT GGTTAAATGTAGGGTGACTTCTTTATAAATATAGTATTGGTAGTGGGTAAAGAGTTTGTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTAAGGCGTAGCGGACGCTGACGCTCTTCCCTCAGGAGTTGGAGACTTCCGAGCCA AAATGGCGGCAGGAACGGGCAAACATAAGCTGCTGAGTACTGGCCCTACAGAGCCATGGT CCATCCGAGAGAAGCTGTGTTTAGCGTCTTCAGTCATGAGGAGTGGAGATCAAAATTGGG TATCAGTTAGCAGAGCAATCAAGCCTTTTGCAGAGCCTGGCCGCCCTCCAGACTGGTTCT CTCAAAAACATTGTGCTTCCCAGTACTCAGAGCTTCTAGAGACCACTGAGACCCCAAAAC GGAAACGGGGTGAAAAGGGAGAAGTGGTAGAAACTGTTGAAGATGTCATTGTTCGGAAAC TGACTGCTGAACGAGTTGAGGAACTCAAGAAAGTGATAAAGGAAACCCAAGAAAAATATA GACGGCTGAAAAGAGATGCAGAACTAATTCAAGCTGGGCACATGGACAGCAGACTGGATG AGCTTTGCAATGACATTGCAATGAAAAAGAAGTTGGAGGAAGAGGAAGCTGAAGTTAAGA GGAAGGCTACCGATGCAGCATATCAGGCCCGTCAAGCAGTAAAAACACCCCCTCGGAGGT TACCTACTATGATGGTCCGCTCTCCCATAGATTCTGCCTCCCCAGGAGGTGATTATCCAC TTGGGGACTTGACTGCAACCACCATGGAAGAGGCTACCTCGGGGGTAAATGAGAGTGAAA TGGCTGTAACTTCTGGCCACCTGAGCAGTAAGTCAGCAGAGAGATGAGTGATGAGGAAAC CACTTTTGGCTTAGAGGCAGTTTCCTCTCTTGGTCTGAATGCTAAGGACTCAATTTACCA TGTTCTAGGCTCAAAGATAAAAATGGATCTAAAAACATTGAGGTTTTTGACATTTTTAGA GATAGGTAAAAAAATATATTAAGGAATTGTTTTTAAGTGTACTGGTCTTGTGAAATTCCT GGTTAAATGTAGGGTGACTTCTTTATAAATATAGTATTGGTAGTGGGTAAAGAGTTTGTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 299-421, + strand, RNAz p=0.991226 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 299-421, + strand, RNAz p=0.991226 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 299-421, gnl|bosTau2|chr7 (34714539-34714417) | |
| 299-421, gnl|canFam2|chr11 (28834275-28834500) | |
| 299-421, gnl|danRer3|chr21 (20104000-20103811) | |
| 299-421, gnl|dasNov1|scaffold_11899 (37177-36952) | |
| 299-421, gnl|echTel1|scaffold_320408 (101177-100961) | |
| 299-421, gnl|fr1|chrUn (129932892-129933087) | |
| 299-421, gnl|galGal2|chr13 (9157569-9157803) | |
| 299-421, gnl|hg17|chr5 (137534567-137534788) | |
| 299-421, gnl|Hg17|chr5 (137534748-137534626) | |
| 299-421, gnl|loxAfr1|scaffold_27834 (4535-4321) | |
| 299-421, gnl|mm7|chr18 (34989854-34990072) | |
| 299-421, gnl|Mm7|chr18 (34990035-34989913) | |
| 299-421, gnl|monDom2|scaffold_6 (71333178-71332977) | |
| 299-421, gnl|oryCun1|scaffold_203987 (10707-10938) | |
| 299-421, gnl|panTro1|chr4 (144136722-144136944) | |
| 299-421, gnl|rheMac2|chr6 (134577140-134577366) | |
| 299-421, gnl|rn3|chr18 (27114661-27114875) | |
| 299-421, gnl|tetNig1|chrUn_random (86105332-86105513) | |
| 299-421, gnl|xenTro1|scaffold_230 (1412278-1412043) | |
| 567-1020, gnl|bosTau2|chr7 (34713081-34712636) | |
| 567-1020, gnl|canFam2|chr11 (28831813-28832310) | |
| 567-1020, gnl|dasNov1|scaffold_11899 (38840-38340) | |
| 567-1020, gnl|echTel1|scaffold_320408 (103857-103363) | |
| 567-1020, gnl|galGal2|chr13 (9155857-9156251) | |
| 567-1020, gnl|hg17|chr5 (137532299-137532795) | |
| 567-1020, gnl|Hg17|chr5 (137532947-137532500) | |
| 567-1020, gnl|loxAfr1|scaffold_27834 (7846-7337) | |
| 567-1020, gnl|mm7|chr18 (34986116-34986582) | |
| 567-1020, gnl|Mm7|chr18 (34986734-34986291) | |
| 567-1020, gnl|monDom2|scaffold_6 (71337054-71336503) | |
| 567-1020, gnl|oryCun1|scaffold_203987 (8015-8483) | |
| 567-1020, gnl|panTro1|chr4 (144134454-144134950) | |
| 567-1020, gnl|rheMac2|chr6 (134574883-134575366) | |
| 567-1020, gnl|rn3|chr18 (27111115-27111576) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 299-421, gnl|bosTau2|chr7 (34714539-34714417) | |
| 299-421, gnl|canFam2|chr11 (28834275-28834500) | |
| 299-421, gnl|danRer3|chr21 (20104000-20103811) | |
| 299-421, gnl|dasNov1|scaffold_11899 (37177-36952) | |
| 299-421, gnl|echTel1|scaffold_320408 (101177-100961) | |
| 299-421, gnl|fr1|chrUn (129932892-129933087) | |
| 299-421, gnl|galGal2|chr13 (9157569-9157803) | |
| 299-421, gnl|hg17|chr5 (137534567-137534788) | |
| 299-421, gnl|Hg17|chr5 (137534748-137534626) | |
| 299-421, gnl|loxAfr1|scaffold_27834 (4535-4321) | |
| 299-421, gnl|mm7|chr18 (34989854-34990072) | |
| 299-421, gnl|Mm7|chr18 (34990035-34989913) | |
| 299-421, gnl|monDom2|scaffold_6 (71333178-71332977) | |
| 299-421, gnl|oryCun1|scaffold_203987 (10707-10938) | |
| 299-421, gnl|panTro1|chr4 (144136722-144136944) | |
| 299-421, gnl|rheMac2|chr6 (134577140-134577366) | |
| 299-421, gnl|rn3|chr18 (27114661-27114875) | |
| 299-421, gnl|tetNig1|chrUn_random (86105332-86105513) | |
| 299-421, gnl|xenTro1|scaffold_230 (1412278-1412043) | |
| 567-1020, gnl|bosTau2|chr7 (34713081-34712636) | |
| 567-1020, gnl|canFam2|chr11 (28831813-28832310) | |
| 567-1020, gnl|dasNov1|scaffold_11899 (38840-38340) | |
| 567-1020, gnl|echTel1|scaffold_320408 (103857-103363) | |
| 567-1020, gnl|galGal2|chr13 (9155857-9156251) | |
| 567-1020, gnl|hg17|chr5 (137532299-137532795) | |
| 567-1020, gnl|Hg17|chr5 (137532947-137532500) | |
| 567-1020, gnl|loxAfr1|scaffold_27834 (7846-7337) | |
| 567-1020, gnl|mm7|chr18 (34986116-34986582) | |
| 567-1020, gnl|Mm7|chr18 (34986734-34986291) | |
| 567-1020, gnl|monDom2|scaffold_6 (71337054-71336503) | |
| 567-1020, gnl|oryCun1|scaffold_203987 (8015-8483) | |
| 567-1020, gnl|panTro1|chr4 (144134454-144134950) | |
| 567-1020, gnl|rheMac2|chr6 (134574883-134575366) | |
| 567-1020, gnl|rn3|chr18 (27111115-27111576) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.271592) | |
| ecc (0.115035) |