Non-Coding RNA Search

Ss1.1-Ova1-OVR010017H11.5

Sequence:


               
               CTACTCTCCAGACTCCGAGGCTGAGGATCATGGGGCCCCGAGCCCTCTTCCTGCTGCTGT
CGGGGGCCCTGGCCCTGACCGGGACTCGGGCAGGTCCCCACTCCCTGAGCTATTTCTCCA
CCGCCGTGTCCCGGCCCGACCGCGGGGAGCCCCGCTTCATCGCCGTCGGCTACGTGGACG
ACACGCAGTTCGTGCGGTTCGACAGCGACGCCCCGAATCCGCGGATGGAGCCTCGGGTGC
CGTGGATACAGCAGGAGGGGCAGGAGTATTGGGATCAGCAGACGCGGAATGTCAAGGAAA
CCGCACAGACTTTCCGAGTGAACCTGCGCACAGCTCTTGGCTACTACAACCAGAGCGAGG
CCGGGTCTCACACCTTCCAGTGGATGTACGGCTGCGACGTGGGACCAGACGGGCTCTTCC
TCCACGGGTACCATCAGTTCGCCTACGACGGCGCCGATTACATCGCCCTGAACGAGGACC
TGCGCTCCTGGACCGCGGCGGACATGGCGGCTCAGATCACCAAGCGCAAGTGGAAGGCGG
CCAATGTGGCGAAGCAGTGGAGGAGCTACCTGCAGGGCACGTGTGTGGAGTGGCTCCGCA
GATACCTGCAGATGGGGAAGGACACGCTGCAGCGCGCAGAGCCTCCAAAGACACATGTGA
CCCGCCACCCCAACTCTGACCTCGGGGTCACCTTGAGGTGCTGGGCCCTGGGCTTCTACC
CTAAGGAGATCTCCCTGACCTGGCAGCGGGAGGGCCAGGACCAGAGCCAGGACATGGAGC
TGGTGGAGACCAGGCCCTCAGGGGATGGGACCTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTACTCTCCAGACTCCGAGGCTGAGGATCATGGGGCCCCGAGCCCTCTTCCTGCTGCTGT
CGGGGGCCCTGGCCCTGACCGGGACTCGGGCAGGTCCCCACTCCCTGAGCTATTTCTCCA
CCGCCGTGTCCCGGCCCGACCGCGGGGAGCCCCGCTTCATCGCCGTCGGCTACGTGGACG
ACACGCAGTTCGTGCGGTTCGACAGCGACGCCCCGAATCCGCGGATGGAGCCTCGGGTGC
CGTGGATACAGCAGGAGGGGCAGGAGTATTGGGATCAGCAGACGCGGAATGTCAAGGAAA
CCGCACAGACTTTCCGAGTGAACCTGCGCACAGCTCTTGGCTACTACAACCAGAGCGAGG
CCGGGTCTCACACCTTCCAGTGGATGTACGGCTGCGACGTGGGACCAGACGGGCTCTTCC
TCCACGGGTACCATCAGTTCGCCTACGACGGCGCCGATTACATCGCCCTGAACGAGGACC
TGCGCTCCTGGACCGCGGCGGACATGGCGGCTCAGATCACCAAGCGCAAGTGGAAGGCGG
CCAATGTGGCGAAGCAGTGGAGGAGCTACCTGCAGGGCACGTGTGTGGAGTGGCTCCGCA
GATACCTGCAGATGGGGAAGGACACGCTGCAGCGCGCAGAGCCTCCAAAGACACATGTGA
CCCGCCACCCCAACTCTGACCTCGGGGTCACCTTGAGGTGCTGGGCCCTGGGCTTCTACC
CTAAGGAGATCTCCCTGACCTGGCAGCGGGAGGGCCAGGACCAGAGCCAGGACATGGAGC
TGGTGGAGACCAGGCCCTCAGGGGATGGGACCTTCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|20378702|gb|AAM20945.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|20378702|gb|AAM20945.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               91-364, gnl|bosTau2|chr23 (23096969-23096696)
               

               
               91-364, gnl|Hg17|chr6 (29903800-29904073)
               

               
               91-364, gnl|Mm7|chr17 (34516578-34516305)
               


               
               397-647, gnl|bosTau2|chr20 (36655627-36655873)
               

               
               397-647, gnl|Hg17|chr6 (31347071-31346829)
               

               
               397-647, gnl|Mm7|chr17 (32077846-32077606)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-364, gnl|bosTau2|chr23 (23096969-23096696)
               

               
               91-364, gnl|Hg17|chr6 (29903800-29904073)
               

               
               91-364, gnl|Mm7|chr17 (34516578-34516305)
               


               
               397-647, gnl|bosTau2|chr20 (36655627-36655873)
               

               
               397-647, gnl|Hg17|chr6 (31347071-31346829)
               

               
               397-647, gnl|Mm7|chr17 (32077846-32077606)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	91-364, gnl\|bosTau2\|chr23 (23096969-23096696)
	91-364, gnl\|Hg17\|chr6 (29903800-29904073)
	91-364, gnl\|Mm7\|chr17 (34516578-34516305)

	397-647, gnl\|bosTau2\|chr20 (36655627-36655873)
	397-647, gnl\|Hg17\|chr6 (31347071-31346829)
	397-647, gnl\|Mm7\|chr17 (32077846-32077606)