Ss1.1-Ova1-OVR010017H12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGGCTCCCGCCACGTCTGCCGCTGCACTTTCTCCCAGGTCCCGCCAGAGCCGCGGCGCA CGGGGACTGGGCAGGGAGCATCATGGGCAGCGTGACACCGCGCTCCGCCTCCGCACTGCT TCTGCTGCTTTTGCTCCAGGTAGAGCGGCCACGGGGTGCGGAGCTCACCTTCGAGCTGCC TGACAACGCCAAGCAGTGTTTCCACGAGGATGTGGAGCAGGGCGTGAAGTTCTCCCTGGA TTACCAGGTCATCACTGGAGGCCACTACGATGTGGACTGCTATGTGGAAGACCCCCTGGG GAACACCATCTACAGGGAAACCAAGAAGCAGTATGACAGCTTCACGCACCGGGCTGAGGT CAAGGGCGTCTATCAGTTTTGCTTCAGTAATGAGTTTTCCACCTTCTCTCATAAGACCGT CTACTTTGATTTTCAAGTGGGCGACGAGCCTCCTATTCTCCCAGACATGGGGAACAGGGT CACAGCTCTCACCCAGATGGAGTCCGCCTGCGTGACCATCCACGAAGCTCTGAAGACCGT GATTGACTCCCAGACGCATTACCGGCTCCGGGAGGCCCAGGACCGGGCCCGGGCCGAAGA CCTGCACAGCCGCGTCTCTTACTGGTCTGTTGGCGAGACGATCGCCCTGTTCGTGGTCAG CTTCGGCCAGGTGCTGCTGCTGAAGAGCTTCTTCACAGAAAAACGACCCATGGGCAGGGC GGTCCACTCCTAGTCGGGTGCTCTGCTCCTGGGCCCCTGCCATCCTGGCGTGGAGCAGCT CCCTCCATCACAGGCTCCTGTGGGCCGAGGGTGCACCCCTGGGTGGAGGCAGAGCTGCCT GGCAAAGAGCACGGGCTGATGTGCTCTCACCCCGTCCTCTGTTCGGATGCCTAGTCCTTG TTTGCCAGCCTCCACATCTCATGGATCCCAGTCATCGGAGGGCATTGAGCGGCCTTCCCT GTGTAACCGTGCACGAAGAAGGGGTGCAGTTAGGCTGGGATTGGTCACATGGGGGTGCAG GAAGGCAGCGTTCCAGTGGCCTGGCTGGTAGGAGGAACCCCAGGGCTGTCTGCTCTGTGA CATGTGGCTTCTGTGGCTTGGGTGTGTGTCCTATCCTGTGTGGGGAAGACCAGGCCCTCG GTCTGGCCTTTCCTCCCACGGAGCTCTCTGCACCTGTGGAAACCAGGCCTGGAAGCAGCT TTGCAGCAATTCCCACCCTGGGTGGGCCATGAGGTCAGCCAGGCAGGCAGGAACAAAACG GTGGCTGGGTGTCTTGGTTGGCTGTGTATGTATCTCCCAGGAGGCGGGACACTGGCTAAT AAAAACTGTGTGAGCACCACGAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGGCTCCCGCCACGTCTGCCGCTGCACTTTCTCCCAGGTCCCGCCAGAGCCGCGGCGCA CGGGGACTGGGCAGGGAGCATCATGGGCAGCGTGACACCGCGCTCCGCCTCCGCACTGCT TCTGCTGCTTTTGCTCCAGGTAGAGCGGCCACGGGGTGCGGAGCTCACCTTCGAGCTGCC TGACAACGCCAAGCAGTGTTTCCACGAGGATGTGGAGCAGGGCGTGAAGTTCTCCCTGGA TTACCAGGTCATCACTGGAGGCCACTACGATGTGGACTGCTATGTGGAAGACCCCCTGGG GAACACCATCTACAGGGAAACCAAGAAGCAGTATGACAGCTTCACGCACCGGGCTGAGGT CAAGGGCGTCTATCAGTTTTGCTTCAGTAATGAGTTTTCCACCTTCTCTCATAAGACCGT CTACTTTGATTTTCAAGTGGGCGACGAGCCTCCTATTCTCCCAGACATGGGGAACAGGGT CACAGCTCTCACCCAGATGGAGTCCGCCTGCGTGACCATCCACGAAGCTCTGAAGACCGT GATTGACTCCCAGACGCATTACCGGCTCCGGGAGGCCCAGGACCGGGCCCGGGCCGAAGA CCTGCACAGCCGCGTCTCTTACTGGTCTGTTGGCGAGACGATCGCCCTGTTCGTGGTCAG CTTCGGCCAGGTGCTGCTGCTGAAGAGCTTCTTCACAGAAAAACGACCCATGGGCAGGGC GGTCCACTCCTAGTCGGGTGCTCTGCTCCTGGGCCCCTGCCATCCTGGCGTGGAGCAGCT CCCTCCATCACAGGCTCCTGTGGGCCGAGGGTGCACCCCTGGGTGGAGGCAGAGCTGCCT GGCAAAGAGCACGGGCTGATGTGCTCTCACCCCGTCCTCTGTTCGGATGCCTAGTCCTTG TTTGCCAGCCTCCACATCTCATGGATCCCAGTCATCGGAGGGCATTGAGCGGCCTTCCCT GTGTAACCGTGCACGAAGAAGGGGTGCAGTTAGGCTGGGATTGGTCACATGGGGGTGCAG GAAGGCAGCGTTCCAGTGGCCTGGCTGGTAGGAGGAACCCCAGGGCTGTCTGCTCTGTGA CATGTGGCTTCTGTGGCTTGGGTGTGTGTCCTATCCTGTGTGGGGAAGACCAGGCCCTCG GTCTGGCCTTTCCTCCCACGGAGCTCTCTGCACCTGTGGAAACCAGGCCTGGAAGCAGCT TTGCAGCAATTCCCACCCTGGGTGGGCCATGAGGTCAGCCAGGCAGGCAGGAACAAAACG GTGGCTGGGTGTCTTGGTTGGCTGTGTATGTATCTCCCAGGAGGCGGGACACTGGCTAAT AAAAACTGTGTGAGCACCACGAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 611-730, + strand, RNAz p=0.923649 | |
| 639-830, - strand, RNAz p=0.989877 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 611-730, + strand, RNAz p=0.923649 | |
| 639-830, - strand, RNAz p=0.989877 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AK075529, + |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 44-258, gnl|bosTau2|chr21 (18543864-18544083) | |
| 44-258, gnl|Hg17|chr15 (77390607-77390825) | |
| 44-258, gnl|Mm7|chr9 (89333465-89333239) | |
| 492-830, gnl|bosTau2|chr21 (18553395-18553736) | |
| 492-830, gnl|canFam2|chr3 (60695594-60695363) | |
| 492-830, gnl|danRer3|chr7 (20920815-20921046) | |
| 492-830, gnl|dasNov1|scaffold_27565 (1836-1605) | |
| 492-830, gnl|echTel1|scaffold_292531 (103421-103190) | |
| 492-830, gnl|fr1|chrUn (144638922-144638696) | |
| 492-830, gnl|galGal2|chr10 (20592228-20592457) | |
| 492-830, gnl|hg17|chr15 (77401364-77401595) | |
| 492-830, gnl|Hg17|chr15 (77401370-77401709) | |
| 492-830, gnl|loxAfr1|scaffold_51777 (23823-23603) | |
| 492-830, gnl|mm7|chr9 (89328496-89328265) | |
| 492-830, gnl|Mm7|chr9 (89328488-89328165) | |
| 492-830, gnl|monDom2|scaffold_45 (8716549-8716318) | |
| 492-830, gnl|oryCun1|scaffold_120804 (744-514) | |
| 492-830, gnl|panTro1|chr16 (78111174-78111405) | |
| 492-830, gnl|rheMac2|chr7 (58446615-58446846) | |
| 492-830, gnl|rn3|chr8 (94610418-94610187) | |
| 492-830, gnl|tetNig1|chr12 (7801092-7801307) | |
| 492-830, gnl|xenTro1|scaffold_2 (7202530-7202761) | |
| 1035-1339, gnl|bosTau2|chr21 (18553937-18554239) | |
| 1035-1339, gnl|canFam2|chr3 (60695310-60695010) | |
| 1035-1339, gnl|dasNov1|scaffold_27565 (1541-1036) | |
| 1035-1339, gnl|echTel1|scaffold_292531 (103127-102745) | |
| 1035-1339, gnl|hg17|chr15 (77401659-77402132) | |
| 1035-1339, gnl|Hg17|chr15 (77401925-77402238) | |
| 1035-1339, gnl|mm7|chr9 (89328217-89327802) | |
| 1035-1339, gnl|Mm7|chr9 (89327978-89327705) | |
| 1035-1339, gnl|oryCun1|scaffold_120804 (488-203) | |
| 1035-1339, gnl|panTro1|chr16 (78111469-78111942) | |
| 1035-1339, gnl|rheMac2|chr7 (58446910-58447371) | |
| 1035-1339, gnl|rn3|chr8 (94610138-94609722) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 44-258, gnl|bosTau2|chr21 (18543864-18544083) | |
| 44-258, gnl|Hg17|chr15 (77390607-77390825) | |
| 44-258, gnl|Mm7|chr9 (89333465-89333239) | |
| 492-830, gnl|bosTau2|chr21 (18553395-18553736) | |
| 492-830, gnl|canFam2|chr3 (60695594-60695363) | |
| 492-830, gnl|danRer3|chr7 (20920815-20921046) | |
| 492-830, gnl|dasNov1|scaffold_27565 (1836-1605) | |
| 492-830, gnl|echTel1|scaffold_292531 (103421-103190) | |
| 492-830, gnl|fr1|chrUn (144638922-144638696) | |
| 492-830, gnl|galGal2|chr10 (20592228-20592457) | |
| 492-830, gnl|hg17|chr15 (77401364-77401595) | |
| 492-830, gnl|Hg17|chr15 (77401370-77401709) | |
| 492-830, gnl|loxAfr1|scaffold_51777 (23823-23603) | |
| 492-830, gnl|mm7|chr9 (89328496-89328265) | |
| 492-830, gnl|Mm7|chr9 (89328488-89328165) | |
| 492-830, gnl|monDom2|scaffold_45 (8716549-8716318) | |
| 492-830, gnl|oryCun1|scaffold_120804 (744-514) | |
| 492-830, gnl|panTro1|chr16 (78111174-78111405) | |
| 492-830, gnl|rheMac2|chr7 (58446615-58446846) | |
| 492-830, gnl|rn3|chr8 (94610418-94610187) | |
| 492-830, gnl|tetNig1|chr12 (7801092-7801307) | |
| 492-830, gnl|xenTro1|scaffold_2 (7202530-7202761) | |
| 1035-1339, gnl|bosTau2|chr21 (18553937-18554239) | |
| 1035-1339, gnl|canFam2|chr3 (60695310-60695010) | |
| 1035-1339, gnl|dasNov1|scaffold_27565 (1541-1036) | |
| 1035-1339, gnl|echTel1|scaffold_292531 (103127-102745) | |
| 1035-1339, gnl|hg17|chr15 (77401659-77402132) | |
| 1035-1339, gnl|Hg17|chr15 (77401925-77402238) | |
| 1035-1339, gnl|mm7|chr9 (89328217-89327802) | |
| 1035-1339, gnl|Mm7|chr9 (89327978-89327705) | |
| 1035-1339, gnl|oryCun1|scaffold_120804 (488-203) | |
| 1035-1339, gnl|panTro1|chr16 (78111469-78111942) | |
| 1035-1339, gnl|rheMac2|chr7 (58446910-58447371) | |
| 1035-1339, gnl|rn3|chr8 (94610138-94609722) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| cov (3.56812) | |
| amn (0.417711) | |
| pla (0.401016) | |
| pty (0.285429) | |
| cty (0.20816) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| nje (0.16592) | |
| eli (0.151814) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| med (0.116252) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (3.56812) | |
| amn (0.417711) | |
| pla (0.401016) | |
| pty (0.285429) | |
| cty (0.20816) | |
| nep (0.183925) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| nje (0.16592) | |
| eli (0.151814) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| med (0.116252) |