Ss1.1-Ova1-OVR010018A11.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGCGGCTACCCGTACGCATCCGAATCTAGCCCGGGAACTAAGAGACGGAGGAGCGGGAT CCGCGAGTTTACTGATTCCGGACCTCCTGGGGACCTGCAAGATGTGCTCCTTGGGGTTGT TCCCTCCGCCGCCGCCTAGGGGACAAGTCACCCTATACGAGCACAATAACGAGCTGGTGA CAGGCAGTAGCTATGAGAGTCCGCCTCCTGACTTCCGGGGCCAGTGGATCAATCTACCTG TCCTAAACCTGACCAAGGATCCCTTGAAGACCCCCGGAAGGCTGGACCATGGCACAAGAA CTGCTTTCATCCACCACCGGGAGCAAGTGTGGAAGAGATGCATCAACATTTGGCGCGATG TGGGTGTTTTTGGGGTGCTGAATGAAATTGCAAACTCGGAGGAGGAGGTGTTTGAGTGGG TGAAGACGGCATCCAGCTGGGCCCTGGCCCTCTGTCGATGGGCCTCCTCGCTCCATGGCT CCCTGTTCCCCCATCTGTCTCTCAGGAGCGAAGATCTGATTGCTGAATTTGCCCAAGTCA CAAACTGGTCCAGCTGCTGCTTGCGGGTCTTTGCGTGGCACCCGCACACCAACAAGTTTG CAGTGGCCCTGCTAGATGACTCAATCCGTGTGTACAACGCCAACAGCACCATAGTCCCCT CCCTGAAGCACCGGCTGCAGAGGAACGTGGCGGCGCTGGCCTGGAAGCCCCTCAGCGCCT CCGTCCTGGCGGTGGCCTGCCAGAGCTGCATTCTCATCTGGACTCTGGACCCCACCTCTC TGTCTACCCGACCCTCTTCTGGCTGCGCCCAAGTGCTCTCTCACCCTGGGCACACACCTG TCACCAGCTTGGCCTGGGCCCCCAGCGGGGGGCGGCTGCTCTCAGCTTCTCCTGTGGATG CTGCCATCCTGGTGTGGGACGTCTCAACAGAGACCTGTGTTCCGCTTCCCTGGTTTCGGG GAGGCGGGGTCACCAACCTGCTCTGGTCCCCAGATGGCAGCAAAGTCCTGGCTACCACGC CTTCAGCGGTCTTTCGGGTCTGGGAGGCCCAGATGTGGACCTGCGAGAGGTGGCCTACTC TGTCCGGGCGATGTCAGACTGGCTGCTGGAGCCCTGATGGAAGCCGCCTGCTGTTCACTG TGTTGGGGGAACCGCTGATTTACTCCTTGTTGTTCCCAGAACACGGTGAGGGGAAGGGCT GTGTCGGGGGTGCGAAGTCAGCAACCATCGTGGCAGATCTGTCCGAGACAACTGTACAGA CACCAGATGGAGAGGAAAGGCTTGGGGGAGAGGCTCACTCCATGGTCTGGGACCCCAGCG GGGAGCGGCTGGCTGTGCTCATGAAAGGAAATCCACGGGTCCAGAATGGTAAACCAGTCA TCCTCCTTTTTCGCACTCGAAACAGCCCTGTGTTTGAGCTACTTCCTTGTGGCATCATCC AGGGGGAGCCCGGAGCCCAGGCCCAGCTCATCACTTTCCATCCTTCCTTCAATAAAGGAG CTCTGCTCAGCGTGTGCTGGTCCACAGGCCGGATTGCCCACATCCCTCTGTACTTTGTCA ATGCCCAGTTTCCACGGTTTAGCCCAGTGTTTGGCCGAACCCAAGAGCCCCCAGCTGGGG CTGGAGGCTCTATTCATGACCTGCCCCTCTTTACTGAGTTGTCCCCAGTCTCTGCCCCTT GGGACCCTCTCCCAGGACCACCCCCTGCTCGGGCTCACTCCCCTCACTCCCACTTCCAAT AAAAAAGGTCCTTGGAGGTCCCTGGTGGCTCGGCAGGTTAAGGGTCCAGTACTATCACTG CTGTGGTGTGGGTTGGATCCCTGGCCCGGGAACTTCTGCATGCTGTGGGCTTGGCCAACC TCTCCCCCAACCCCAGAAAACACCAAAACCAATGTCCCGTTTTGTTTTCCACTCAACTAT AAGATTCTACCTTTTCTAGAGAGTTGCACTGGGGTATAGTGAAGAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGCGGCTACCCGTACGCATCCGAATCTAGCCCGGGAACTAAGAGACGGAGGAGCGGGAT CCGCGAGTTTACTGATTCCGGACCTCCTGGGGACCTGCAAGATGTGCTCCTTGGGGTTGT TCCCTCCGCCGCCGCCTAGGGGACAAGTCACCCTATACGAGCACAATAACGAGCTGGTGA CAGGCAGTAGCTATGAGAGTCCGCCTCCTGACTTCCGGGGCCAGTGGATCAATCTACCTG TCCTAAACCTGACCAAGGATCCCTTGAAGACCCCCGGAAGGCTGGACCATGGCACAAGAA CTGCTTTCATCCACCACCGGGAGCAAGTGTGGAAGAGATGCATCAACATTTGGCGCGATG TGGGTGTTTTTGGGGTGCTGAATGAAATTGCAAACTCGGAGGAGGAGGTGTTTGAGTGGG TGAAGACGGCATCCAGCTGGGCCCTGGCCCTCTGTCGATGGGCCTCCTCGCTCCATGGCT CCCTGTTCCCCCATCTGTCTCTCAGGAGCGAAGATCTGATTGCTGAATTTGCCCAAGTCA CAAACTGGTCCAGCTGCTGCTTGCGGGTCTTTGCGTGGCACCCGCACACCAACAAGTTTG CAGTGGCCCTGCTAGATGACTCAATCCGTGTGTACAACGCCAACAGCACCATAGTCCCCT CCCTGAAGCACCGGCTGCAGAGGAACGTGGCGGCGCTGGCCTGGAAGCCCCTCAGCGCCT CCGTCCTGGCGGTGGCCTGCCAGAGCTGCATTCTCATCTGGACTCTGGACCCCACCTCTC TGTCTACCCGACCCTCTTCTGGCTGCGCCCAAGTGCTCTCTCACCCTGGGCACACACCTG TCACCAGCTTGGCCTGGGCCCCCAGCGGGGGGCGGCTGCTCTCAGCTTCTCCTGTGGATG CTGCCATCCTGGTGTGGGACGTCTCAACAGAGACCTGTGTTCCGCTTCCCTGGTTTCGGG GAGGCGGGGTCACCAACCTGCTCTGGTCCCCAGATGGCAGCAAAGTCCTGGCTACCACGC CTTCAGCGGTCTTTCGGGTCTGGGAGGCCCAGATGTGGACCTGCGAGAGGTGGCCTACTC TGTCCGGGCGATGTCAGACTGGCTGCTGGAGCCCTGATGGAAGCCGCCTGCTGTTCACTG TGTTGGGGGAACCGCTGATTTACTCCTTGTTGTTCCCAGAACACGGTGAGGGGAAGGGCT GTGTCGGGGGTGCGAAGTCAGCAACCATCGTGGCAGATCTGTCCGAGACAACTGTACAGA CACCAGATGGAGAGGAAAGGCTTGGGGGAGAGGCTCACTCCATGGTCTGGGACCCCAGCG GGGAGCGGCTGGCTGTGCTCATGAAAGGAAATCCACGGGTCCAGAATGGTAAACCAGTCA TCCTCCTTTTTCGCACTCGAAACAGCCCTGTGTTTGAGCTACTTCCTTGTGGCATCATCC AGGGGGAGCCCGGAGCCCAGGCCCAGCTCATCACTTTCCATCCTTCCTTCAATAAAGGAG CTCTGCTCAGCGTGTGCTGGTCCACAGGCCGGATTGCCCACATCCCTCTGTACTTTGTCA ATGCCCAGTTTCCACGGTTTAGCCCAGTGTTTGGCCGAACCCAAGAGCCCCCAGCTGGGG CTGGAGGCTCTATTCATGACCTGCCCCTCTTTACTGAGTTGTCCCCAGTCTCTGCCCCTT GGGACCCTCTCCCAGGACCACCCCCTGCTCGGGCTCACTCCCCTCACTCCCACTTCCAAT AAAAAAGGTCCTTGGAGGTCCCTGGTGGCTCGGCAGGTTAAGGGTCCAGTACTATCACTG CTGTGGTGTGGGTTGGATCCCTGGCCCGGGAACTTCTGCATGCTGTGGGCTTGGCCAACC TCTCCCCCAACCCCAGAAAACACCAAAACCAATGTCCCGTTTTGTTTTCCACTCAACTAT AAGATTCTACCTTTTCTAGAGAGTTGCACTGGGGTATAGTGAAGAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 907-1740, + strand, RNAz p=0.979794 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 907-1740, + strand, RNAz p=0.979794 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 602-790, gnl|bosTau2|chr5 (19121939-19122124) | |
| 602-790, gnl|canFam2|chr27 (4898137-4897969) | |
| 602-790, gnl|danRer3|chr9 (4004449-4004301) | |
| 602-790, gnl|dasNov1|scaffold_202009 (3643-3806) | |
| 602-790, gnl|echTel1|scaffold_308601 (75538-75701) | |
| 602-790, gnl|fr1|chrUn (70103542-70103708) | |
| 602-790, gnl|galGal2|chrUn (134251328-134251492) | |
| 602-790, gnl|hg17|chr12 (51994335-51994498) | |
| 602-790, gnl|Hg17|chr12 (51994534-51994349) | |
| 602-790, gnl|loxAfr1|scaffold_3361 (97153-96990) | |
| 602-790, gnl|mm7|chr15 (102330232-102330394) | |
| 602-790, gnl|Mm7|chr15 (102330430-102330246) | |
| 602-790, gnl|panTro1|chr10 (53231550-53231713) | |
| 602-790, gnl|rheMac2|chr11 (50381410-50381573) | |
| 602-790, gnl|rn3|chr7 (141170524-141170687) | |
| 602-790, gnl|tetNig1|chr9 (7678920-7679067) | |
| 602-790, gnl|xenTro1|scaffold_280 (1124593-1124444) | |
| 907-1037, gnl|bosTau2|chr5 (19126761-19126892) | |
| 907-1037, gnl|canFam2|chr27 (4902428-4902293) | |
| 907-1037, gnl|echTel1|scaffold_308601 (69415-69550) | |
| 907-1037, gnl|fr1|chrUn (70103029-70103164) | |
| 907-1037, gnl|galGal2|chrUn (134250684-134250819) | |
| 907-1037, gnl|hg17|chr12 (51989204-51989339) | |
| 907-1037, gnl|Hg17|chr12 (51989338-51989207) | |
| 907-1037, gnl|loxAfr1|scaffold_3361 (102465-102327) | |
| 907-1037, gnl|mm7|chr15 (102326097-102326232) | |
| 907-1037, gnl|Mm7|chr15 (102326231-102326100) | |
| 907-1037, gnl|oryCun1|scaffold_133962 (649-514) | |
| 907-1037, gnl|panTro1|chr10 (53226426-53226561) | |
| 907-1037, gnl|rn3|chr7 (141166240-141166375) | |
| 907-1037, gnl|tetNig1|chr9 (7678477-7678608) | |
| 907-1037, gnl|xenTro1|scaffold_280 (1127965-1127830) | |
| 1501-1753, gnl|bosTau2|chr5 (19128357-19128609) | |
| 1501-1753, gnl|Hg17|chr12 (51987776-51987522) | |
| 1501-1753, gnl|Mm7|chr15 (102324674-102324428) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 602-790, gnl|bosTau2|chr5 (19121939-19122124) | |
| 602-790, gnl|canFam2|chr27 (4898137-4897969) | |
| 602-790, gnl|danRer3|chr9 (4004449-4004301) | |
| 602-790, gnl|dasNov1|scaffold_202009 (3643-3806) | |
| 602-790, gnl|echTel1|scaffold_308601 (75538-75701) | |
| 602-790, gnl|fr1|chrUn (70103542-70103708) | |
| 602-790, gnl|galGal2|chrUn (134251328-134251492) | |
| 602-790, gnl|hg17|chr12 (51994335-51994498) | |
| 602-790, gnl|Hg17|chr12 (51994534-51994349) | |
| 602-790, gnl|loxAfr1|scaffold_3361 (97153-96990) | |
| 602-790, gnl|mm7|chr15 (102330232-102330394) | |
| 602-790, gnl|Mm7|chr15 (102330430-102330246) | |
| 602-790, gnl|panTro1|chr10 (53231550-53231713) | |
| 602-790, gnl|rheMac2|chr11 (50381410-50381573) | |
| 602-790, gnl|rn3|chr7 (141170524-141170687) | |
| 602-790, gnl|tetNig1|chr9 (7678920-7679067) | |
| 602-790, gnl|xenTro1|scaffold_280 (1124593-1124444) | |
| 907-1037, gnl|bosTau2|chr5 (19126761-19126892) | |
| 907-1037, gnl|canFam2|chr27 (4902428-4902293) | |
| 907-1037, gnl|echTel1|scaffold_308601 (69415-69550) | |
| 907-1037, gnl|fr1|chrUn (70103029-70103164) | |
| 907-1037, gnl|galGal2|chrUn (134250684-134250819) | |
| 907-1037, gnl|hg17|chr12 (51989204-51989339) | |
| 907-1037, gnl|Hg17|chr12 (51989338-51989207) | |
| 907-1037, gnl|loxAfr1|scaffold_3361 (102465-102327) | |
| 907-1037, gnl|mm7|chr15 (102326097-102326232) | |
| 907-1037, gnl|Mm7|chr15 (102326231-102326100) | |
| 907-1037, gnl|oryCun1|scaffold_133962 (649-514) | |
| 907-1037, gnl|panTro1|chr10 (53226426-53226561) | |
| 907-1037, gnl|rn3|chr7 (141166240-141166375) | |
| 907-1037, gnl|tetNig1|chr9 (7678477-7678608) | |
| 907-1037, gnl|xenTro1|scaffold_280 (1127965-1127830) | |
| 1501-1753, gnl|bosTau2|chr5 (19128357-19128609) | |
| 1501-1753, gnl|Hg17|chr12 (51987776-51987522) | |
| 1501-1753, gnl|Mm7|chr15 (102324674-102324428) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| nep (0.183925) | |
| jej (0.0989218) |