Non-Coding RNA Search

Ss1.1-Ova1-OVR010018B04.5

Sequence:


               
               CCCACGCCGTAAACAGAGAACATGGCGGCGGCAGCGGGGGTACCTGGGGCCTTAGGTACC
CTGCGGGCAGGCCGCGCCCGCTTGGTGGCTGCTTACTGTGCGGGGATCGGCCCCGGGTGG
AGGCTCCCTGGCTCCTGGACCGGCCTGCCGGTAGGGCCGGCCATCTGGGCTCGGGGCTGG
ACGCCCGCGGCCGGGGGTGCGGCCTGGCGAAGGGGCTACAGCTCTGAGGCGAAGACGGAG
GACGAGCTGCGGGTGCGATATCTGGAGGAGGAGAACCGAGGAATTGTGGTGCTCGGAATA
AACAGAGCTTATGCCAAAAATTCACTGAGTAAAAATCTTGTAAAAATGCTGTCAAAAGCT
GTGGATGCTTTAAAATCTGATAAGAAAGTACGGACCATAATAGTCAGAAGTGAAGTCCCA
GGGATATTCTGTGCTGGTGCTGACCTTAAGGAAAGAGTCAAAATGCATTCCAGTGAAGTT
GGTCCTTTTGTCTCCAAATTAAGAGCAGTGATTAATGAAATCGCTAATCTTCCAGTGCCA
ACCATTGCAGCAATAGATGGACTCGCTTTAGGTGGTGGACTTGAACTGGCTTTAGCATGT
GATATAAGAGTAGCAGCTTCCTCCGCCAAAATGGGCCTGGTTGAAACAAAGTTGGCAATT
ATTCCTGGTGGAGGTATGAATTGTTCATGCCCATCTGCCATCGGGATGTCCCTGGCCAAA
GAGCTCATTTTCTCTGCACGTGTGCTCGATGGCCAAGAAGCCAAAGCAGTGGGCTTGATC
AGCCACGTTCTAGAACAGAACCAGGAGGGGGACGCTGCCTACAGAAAGGCCTTGGACCTA
GCAAGAGAGTTTTTACCTCAGGGACCTGTTGCAATAAGAGTGGCAAAATTAGCAATTAAT
CAAGGGATGGAGGTTGATTTAGTAACAGGATTAGCCATAGAAGAAGCTTGTTATGCTCAG
ACTGTTCCAACGAAAGACAGACTTGAAGGTCTTCTTGCTTTTAAAGAGAAAAGGACCCCT
CGCTATAAAGGAGAATAGAAGCAACAGAAATCTTGAAAATGCCAGTGTAATAAATGTACT
TCTGGAAGTGTCTTTCAGATCCATGTATGCCTCAGCACCTGGAACCCCAGCGACCAAAGT
AAAGAGCAAGTTATCTGTATACCGAATAAAGTACCTGCAGTGGACCTATATGTGTACTTT
GTTCAAGTGTGTATCATCATATTCATTCAGATGTATAAAGCTAGTAGTGTATACTGTCAG
AAACACCAACTCAGAATTAGGTGTACATTTTTAAATACCTCCTGCATATGAGGCTTTCTG
TTCCTAATCTTTTTAATGTGAATAATTTATATATTGCACACTCCAGGAAATAATATTGAT
TGTATGTCTCCTGTGCTGCAGTATGAAAATAAAATTATTTATATATACCAAAAATGTGAC
GTTATACCAAATAAAATTTCTAAGGGATTATTCACACATGTACCCTCACACATACATCTC
ATACCGAAGAAGGAGTTGATCGAATTCTGAGTGAAAATGACCAAATATAAATAAAATTAG
TGAAAAGAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACGCCGTAAACAGAGAACATGGCGGCGGCAGCGGGGGTACCTGGGGCCTTAGGTACC
CTGCGGGCAGGCCGCGCCCGCTTGGTGGCTGCTTACTGTGCGGGGATCGGCCCCGGGTGG
AGGCTCCCTGGCTCCTGGACCGGCCTGCCGGTAGGGCCGGCCATCTGGGCTCGGGGCTGG
ACGCCCGCGGCCGGGGGTGCGGCCTGGCGAAGGGGCTACAGCTCTGAGGCGAAGACGGAG
GACGAGCTGCGGGTGCGATATCTGGAGGAGGAGAACCGAGGAATTGTGGTGCTCGGAATA
AACAGAGCTTATGCCAAAAATTCACTGAGTAAAAATCTTGTAAAAATGCTGTCAAAAGCT
GTGGATGCTTTAAAATCTGATAAGAAAGTACGGACCATAATAGTCAGAAGTGAAGTCCCA
GGGATATTCTGTGCTGGTGCTGACCTTAAGGAAAGAGTCAAAATGCATTCCAGTGAAGTT
GGTCCTTTTGTCTCCAAATTAAGAGCAGTGATTAATGAAATCGCTAATCTTCCAGTGCCA
ACCATTGCAGCAATAGATGGACTCGCTTTAGGTGGTGGACTTGAACTGGCTTTAGCATGT
GATATAAGAGTAGCAGCTTCCTCCGCCAAAATGGGCCTGGTTGAAACAAAGTTGGCAATT
ATTCCTGGTGGAGGTATGAATTGTTCATGCCCATCTGCCATCGGGATGTCCCTGGCCAAA
GAGCTCATTTTCTCTGCACGTGTGCTCGATGGCCAAGAAGCCAAAGCAGTGGGCTTGATC
AGCCACGTTCTAGAACAGAACCAGGAGGGGGACGCTGCCTACAGAAAGGCCTTGGACCTA
GCAAGAGAGTTTTTACCTCAGGGACCTGTTGCAATAAGAGTGGCAAAATTAGCAATTAAT
CAAGGGATGGAGGTTGATTTAGTAACAGGATTAGCCATAGAAGAAGCTTGTTATGCTCAG
ACTGTTCCAACGAAAGACAGACTTGAAGGTCTTCTTGCTTTTAAAGAGAAAAGGACCCCT
CGCTATAAAGGAGAATAGAAGCAACAGAAATCTTGAAAATGCCAGTGTAATAAATGTACT
TCTGGAAGTGTCTTTCAGATCCATGTATGCCTCAGCACCTGGAACCCCAGCGACCAAAGT
AAAGAGCAAGTTATCTGTATACCGAATAAAGTACCTGCAGTGGACCTATATGTGTACTTT
GTTCAAGTGTGTATCATCATATTCATTCAGATGTATAAAGCTAGTAGTGTATACTGTCAG
AAACACCAACTCAGAATTAGGTGTACATTTTTAAATACCTCCTGCATATGAGGCTTTCTG
TTCCTAATCTTTTTAATGTGAATAATTTATATATTGCACACTCCAGGAAATAATATTGAT
TGTATGTCTCCTGTGCTGCAGTATGAAAATAAAATTATTTATATATACCAAAAATGTGAC
GTTATACCAAATAAAATTTCTAAGGGATTATTCACACATGTACCCTCACACATACATCTC
ATACCGAAGAAGGAGTTGATCGAATTCTGAGTGAAAATGACCAAATATAAATAAAATTAG
TGAAAAGAAAAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|17943412|pdb|1HZD|F

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|17943412|pdb|1HZD|F

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               15-521, gnl|bosTau2|chr16 (14468455-14467949)
               

               
               15-521, gnl|Hg17|chr9 (91203733-91197718)
               


               
               691-1434, gnl|bosTau2|chr16 (14467929-14467185)
               

               
               691-1434, gnl|Hg17|chr9 (91062812-91055797)
               

               
               691-1434, gnl|Mm7|chr13 (51881854-51875926)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-521, gnl|bosTau2|chr16 (14468455-14467949)
               

               
               15-521, gnl|Hg17|chr9 (91203733-91197718)
               


               
               691-1434, gnl|bosTau2|chr16 (14467929-14467185)
               

               
               691-1434, gnl|Hg17|chr9 (91062812-91055797)
               

               
               691-1434, gnl|Mm7|chr13 (51881854-51875926)

Expressed library(ies): 26 entry(ies)

More info

Expressed library(ies): 26 entry(ies)

Help | Less info


               
               kid (0.908147)
               

               
               cbe (0.717703)
               

               
               spc (0.566829)
               

               
               thg (0.380373)
               

               
               rec (0.346141)
               

               
               bfe (0.299715)
               

               
               ret (0.257467)
               

               
               pan (0.23596)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               sag (0.182715)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.908147)
               

               
               cbe (0.717703)
               

               
               spc (0.566829)
               

               
               thg (0.380373)
               

               
               rec (0.346141)
               

               
               bfe (0.299715)
               

               
               ret (0.257467)
               

               
               pan (0.23596)
               

               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               sag (0.182715)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

	15-521, gnl\|bosTau2\|chr16 (14468455-14467949)
	15-521, gnl\|Hg17\|chr9 (91203733-91197718)

	691-1434, gnl\|bosTau2\|chr16 (14467929-14467185)
	691-1434, gnl\|Hg17\|chr9 (91062812-91055797)
	691-1434, gnl\|Mm7\|chr13 (51881854-51875926)

	kid (0.908147)
	cbe (0.717703)
	spc (0.566829)
	thg (0.380373)
	rec (0.346141)
	bfe (0.299715)
	ret (0.257467)
	pan (0.23596)
	cty (0.20816)
	hea (0.204499)
	jej (0.197844)
	sag (0.182715)
	mcp (0.170648)
	fhi (0.169578)
	tbr (0.154178)
	isp (0.150376)
	liv (0.146284)
	lin (0.145603)
	hyp (0.142837)
	che (0.136314)
	ssp (0.13552)
	ste (0.135208)
	lyg (0.133103)
	sug (0.127291)
	pgl (0.118483)
	ebs (0.118301)