Ss1.1-Ova1-OVR010018C09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGTGGCATTTGAGGGTCGAGACCTGCTGCGGTTCTCACTTTCTGTCATGGCGCTGAAGG TGGCGACGGCTGCAGGCGGCGCGGCGAAGGCAGTGCTCAGGCCAGCCCTCCTCTGCCGTC CCTGGGAGGTTCTAGGTGCCCACGAGGCCCCCCGGAGGAGCTTCTCTCAACAGACAATTC CTCCGTCGGCCAAGTATGGGGGGCGGCACACGGTGACCATGATCCCGGGGGATGGCATCG GGCCGGAGCTCATGCTGCATGTCAAGTCTGTGTTCAGGCATGCGTGTGTGCCTGTGGACT TCGAAGAGGTGCATGTGAGCTCCAACGCCGACGAGGAGGACATCCGGAATGCCATCATGG CCATCCGTCGGAACCGTGTGGCTCTAAAGGGCAATATTGAAACAAACCACAACCTGCCGC CGTCGCACAAGTCCCGGAACAACATCCTCCGCACCAGCCTGGACCTCTATGCCAACGTCA TCCACTGCAAGAGCCTGCCCGGCGTCGTCACGCGGCACAGGGACGTCGACATCCTCATCG TCCGGGAGAACACGGAGGGCGAGTACAGCAGCCTGGAGCACGAGAGCGTGGCAGGAGTGG TGGAGAGCCTCAAGATCATCACCAAGGCCAAGTCCCTGCGCATCGCCGAGTACGCCTTCA AACTGGCCCAGGAGACGGGGCGCAAGAAAGTGACGGCTGTGCACAAGGCCAACATCATGA AGCTGGGCGATGGGCTCTTCCTCCAGTGCTGCAAGGAGGTGGCGGCCGGTTACCCCCACA TCACCTTCGAGAACATGATCGTAGACAACACCACCATGCAGCTGGTGTCCCGGCCGCAGC AGTTCGACGTCATGGTGATGCCCAACCTCTACGGCAACATCGTCAACAACGTCTGCGCGG GCCTGGTGGGCGGCCCCGGGCTCGTGGCGGGGGCCAACTACGGGCACGTGTACGCCGTCT TCGAGACCGCTACGAGGAACACAGGCAAGAGCATCGCCAACAAGAACATTGCCAACCCCA CAGCGACGCTGCTCGCAAGCTGCATGATGCTCGACCACCTCAAGCTCCACTCCTACGCCA CGTCCATCCGCAAGGCCGTCTTGGCGTCCATGGACAACGAAAACATGCACACGCCAGACA TCGGGGGCCAGGGCACGACGTCGGAAGCCATCCAGGACATCATTCGCCACATCCGCATCA TCAACGGGCGGGCGGTGGAGGCCTAGGCCACCCTGGGGACTGTGCCGGCCACTCTGTAGA TGCCCTTTGCACCCCCAGCTCCCTAGCCAGCCCGGGGTGTGGACCCAGAATAAACCCGCT TCTGCCCAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGTGGCATTTGAGGGTCGAGACCTGCTGCGGTTCTCACTTTCTGTCATGGCGCTGAAGG TGGCGACGGCTGCAGGCGGCGCGGCGAAGGCAGTGCTCAGGCCAGCCCTCCTCTGCCGTC CCTGGGAGGTTCTAGGTGCCCACGAGGCCCCCCGGAGGAGCTTCTCTCAACAGACAATTC CTCCGTCGGCCAAGTATGGGGGGCGGCACACGGTGACCATGATCCCGGGGGATGGCATCG GGCCGGAGCTCATGCTGCATGTCAAGTCTGTGTTCAGGCATGCGTGTGTGCCTGTGGACT TCGAAGAGGTGCATGTGAGCTCCAACGCCGACGAGGAGGACATCCGGAATGCCATCATGG CCATCCGTCGGAACCGTGTGGCTCTAAAGGGCAATATTGAAACAAACCACAACCTGCCGC CGTCGCACAAGTCCCGGAACAACATCCTCCGCACCAGCCTGGACCTCTATGCCAACGTCA TCCACTGCAAGAGCCTGCCCGGCGTCGTCACGCGGCACAGGGACGTCGACATCCTCATCG TCCGGGAGAACACGGAGGGCGAGTACAGCAGCCTGGAGCACGAGAGCGTGGCAGGAGTGG TGGAGAGCCTCAAGATCATCACCAAGGCCAAGTCCCTGCGCATCGCCGAGTACGCCTTCA AACTGGCCCAGGAGACGGGGCGCAAGAAAGTGACGGCTGTGCACAAGGCCAACATCATGA AGCTGGGCGATGGGCTCTTCCTCCAGTGCTGCAAGGAGGTGGCGGCCGGTTACCCCCACA TCACCTTCGAGAACATGATCGTAGACAACACCACCATGCAGCTGGTGTCCCGGCCGCAGC AGTTCGACGTCATGGTGATGCCCAACCTCTACGGCAACATCGTCAACAACGTCTGCGCGG GCCTGGTGGGCGGCCCCGGGCTCGTGGCGGGGGCCAACTACGGGCACGTGTACGCCGTCT TCGAGACCGCTACGAGGAACACAGGCAAGAGCATCGCCAACAAGAACATTGCCAACCCCA CAGCGACGCTGCTCGCAAGCTGCATGATGCTCGACCACCTCAAGCTCCACTCCTACGCCA CGTCCATCCGCAAGGCCGTCTTGGCGTCCATGGACAACGAAAACATGCACACGCCAGACA TCGGGGGCCAGGGCACGACGTCGGAAGCCATCCAGGACATCATTCGCCACATCCGCATCA TCAACGGGCGGGCGGTGGAGGCCTAGGCCACCCTGGGGACTGTGCCGGCCACTCTGTAGA TGCCCTTTGCACCCCCAGCTCCCTAGCCAGCCCGGGGTGTGGACCCAGAATAAACCCGCT TCTGCCCAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 811-967, + strand, RNAz p=0.928096 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 811-967, + strand, RNAz p=0.928096 |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 1-130, gnl|bosTau2|chrX (13490125-13490254) | |
| 1-130, gnl|canFam2|chrX (124652083-124652167) | |
| 1-130, gnl|echTel1|scaffold_282787 (2928-3012) | |
| 1-130, gnl|hg17|chrX (152580547-152580631) | |
| 1-130, gnl|Hg17|chrX (152580675-152580546) | |
| 1-130, gnl|loxAfr1|scaffold_66495 (3254-3170) | |
| 1-130, gnl|mm7|chrX (69173423-69173507) | |
| 1-130, gnl|Mm7|chrX (69173550-69173422) | |
| 1-130, gnl|monDom2|scaffold_178 (1323544-1323628) | |
| 1-130, gnl|rheMac2|chrX (151909375-151909459) | |
| 1-130, gnl|rn3|chrX (159785549-159785633) | |
| 275-391, gnl|bosTau2|chrX (13494693-13494809) | |
| 275-391, gnl|canFam2|chrX (124647279-124647428) | |
| 275-391, gnl|danRer3|chr23 (42257614-42257482) | |
| 275-391, gnl|dasNov1|scaffold_71435 (1422-1314) | |
| 275-391, gnl|echTel1|scaffold_282787 (297-432) | |
| 275-391, gnl|fr1|chrUn (19779628-19779760) | |
| 275-391, gnl|hg17|chrX (152575995-152576142) | |
| 275-391, gnl|Hg17|chrX (152576129-152576013) | |
| 275-391, gnl|loxAfr1|scaffold_48249 (7508-7655) | |
| 275-391, gnl|mm7|chrX (69168314-69168454) | |
| 275-391, gnl|Mm7|chrX (69168441-69168325) | |
| 275-391, gnl|monDom2|scaffold_178 (1315036-1315171) | |
| 275-391, gnl|oryCun1|scaffold_104928 (4783-4921) | |
| 275-391, gnl|panTro1|chrX (157863979-157864126) | |
| 275-391, gnl|rheMac2|chrX (151904532-151904679) | |
| 275-391, gnl|rn3|chrX (159779844-159779984) | |
| 275-391, gnl|tetNig1|chr9 (3522459-3522591) | |
| 275-391, gnl|xenTro1|scaffold_317 (223446-223327) | |
| 583-719, gnl|bosTau2|chrX (13496057-13496193) | |
| 583-719, gnl|canFam2|chrX (124645278-124645394) | |
| 583-719, gnl|danRer3|chr23 (42262888-42262775) | |
| 583-719, gnl|dasNov1|scaffold_239169 (14-131) | |
| 583-719, gnl|echTel1|scaffold_298064 (650-536) | |
| 583-719, gnl|fr1|chrUn (19778932-19779049) | |
| 583-719, gnl|galGal2|chrUn (159896703-159896585) | |
| 583-719, gnl|hg17|chrX (152573761-152573878) | |
| 583-719, gnl|Hg17|chrX (152573901-152573765) | |
| 583-719, gnl|loxAfr1|scaffold_66495 (3873-3761) | |
| 583-719, gnl|mm7|chrX (69167218-69167335) | |
| 583-719, gnl|Mm7|chrX (69167358-69167222) | |
| 583-719, gnl|monDom2|scaffold_178 (1310608-1310725) | |
| 583-719, gnl|oryCun1|scaffold_179710 (19307-19422) | |
| 583-719, gnl|panTro1|chrX (157861734-157861851) | |
| 583-719, gnl|rheMac2|chr14 (50590468-50590580) | |
| 583-719, gnl|rn3|chrX (159778061-159778178) | |
| 583-719, gnl|tetNig1|chr9 (3521830-3521947) | |
| 583-719, gnl|xenTro1|scaffold_317 (224577-224460) | |
| 811-967, gnl|bosTau2|chrX (13496560-13496716) | |
| 811-967, gnl|Hg17|chrX (152573276-152573104) | |
| 811-967, gnl|Mm7|chrX (69166783-69166627) | |
| 1125-1327, gnl|bosTau2|chrX (13498373-13498576) | |
| 1125-1327, gnl|Hg17|chrX (152572275-152572072) | |
| 1125-1327, gnl|Mm7|chrX (69165820-69165617) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-130, gnl|bosTau2|chrX (13490125-13490254) | |
| 1-130, gnl|canFam2|chrX (124652083-124652167) | |
| 1-130, gnl|echTel1|scaffold_282787 (2928-3012) | |
| 1-130, gnl|hg17|chrX (152580547-152580631) | |
| 1-130, gnl|Hg17|chrX (152580675-152580546) | |
| 1-130, gnl|loxAfr1|scaffold_66495 (3254-3170) | |
| 1-130, gnl|mm7|chrX (69173423-69173507) | |
| 1-130, gnl|Mm7|chrX (69173550-69173422) | |
| 1-130, gnl|monDom2|scaffold_178 (1323544-1323628) | |
| 1-130, gnl|rheMac2|chrX (151909375-151909459) | |
| 1-130, gnl|rn3|chrX (159785549-159785633) | |
| 275-391, gnl|bosTau2|chrX (13494693-13494809) | |
| 275-391, gnl|canFam2|chrX (124647279-124647428) | |
| 275-391, gnl|danRer3|chr23 (42257614-42257482) | |
| 275-391, gnl|dasNov1|scaffold_71435 (1422-1314) | |
| 275-391, gnl|echTel1|scaffold_282787 (297-432) | |
| 275-391, gnl|fr1|chrUn (19779628-19779760) | |
| 275-391, gnl|hg17|chrX (152575995-152576142) | |
| 275-391, gnl|Hg17|chrX (152576129-152576013) | |
| 275-391, gnl|loxAfr1|scaffold_48249 (7508-7655) | |
| 275-391, gnl|mm7|chrX (69168314-69168454) | |
| 275-391, gnl|Mm7|chrX (69168441-69168325) | |
| 275-391, gnl|monDom2|scaffold_178 (1315036-1315171) | |
| 275-391, gnl|oryCun1|scaffold_104928 (4783-4921) | |
| 275-391, gnl|panTro1|chrX (157863979-157864126) | |
| 275-391, gnl|rheMac2|chrX (151904532-151904679) | |
| 275-391, gnl|rn3|chrX (159779844-159779984) | |
| 275-391, gnl|tetNig1|chr9 (3522459-3522591) | |
| 275-391, gnl|xenTro1|scaffold_317 (223446-223327) | |
| 583-719, gnl|bosTau2|chrX (13496057-13496193) | |
| 583-719, gnl|canFam2|chrX (124645278-124645394) | |
| 583-719, gnl|danRer3|chr23 (42262888-42262775) | |
| 583-719, gnl|dasNov1|scaffold_239169 (14-131) | |
| 583-719, gnl|echTel1|scaffold_298064 (650-536) | |
| 583-719, gnl|fr1|chrUn (19778932-19779049) | |
| 583-719, gnl|galGal2|chrUn (159896703-159896585) | |
| 583-719, gnl|hg17|chrX (152573761-152573878) | |
| 583-719, gnl|Hg17|chrX (152573901-152573765) | |
| 583-719, gnl|loxAfr1|scaffold_66495 (3873-3761) | |
| 583-719, gnl|mm7|chrX (69167218-69167335) | |
| 583-719, gnl|Mm7|chrX (69167358-69167222) | |
| 583-719, gnl|monDom2|scaffold_178 (1310608-1310725) | |
| 583-719, gnl|oryCun1|scaffold_179710 (19307-19422) | |
| 583-719, gnl|panTro1|chrX (157861734-157861851) | |
| 583-719, gnl|rheMac2|chr14 (50590468-50590580) | |
| 583-719, gnl|rn3|chrX (159778061-159778178) | |
| 583-719, gnl|tetNig1|chr9 (3521830-3521947) | |
| 583-719, gnl|xenTro1|scaffold_317 (224577-224460) | |
| 811-967, gnl|bosTau2|chrX (13496560-13496716) | |
| 811-967, gnl|Hg17|chrX (152573276-152573104) | |
| 811-967, gnl|Mm7|chrX (69166783-69166627) | |
| 1125-1327, gnl|bosTau2|chrX (13498373-13498576) | |
| 1125-1327, gnl|Hg17|chrX (152572275-152572072) | |
| 1125-1327, gnl|Mm7|chrX (69165820-69165617) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| col (0.585023) | |
| mas (0.42061) | |
| cov (0.396458) | |
| fty (0.351679) | |
| nco (0.323468) | |
| hlv (0.278513) | |
| nca (0.273748) | |
| ese (0.253004) | |
| nms (0.213858) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| eli (0.151814) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| pgl (0.118483) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.585023) | |
| mas (0.42061) | |
| cov (0.396458) | |
| fty (0.351679) | |
| nco (0.323468) | |
| hlv (0.278513) | |
| nca (0.273748) | |
| ese (0.253004) | |
| nms (0.213858) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| eli (0.151814) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| nmm (0.132802) | |
| pgl (0.118483) | |
| nbm (0.0993246) | |
| jej (0.0989218) |