Non-Coding RNA Search

Ss1.1-Ova1-OVR010018D08.5

Sequence:


               
               ATTCAGAGCCCGCGCTCTCCCAGCCTCGAGACAGGCGGGGGAGGAAGCGGCTCCAGTAAA
GTGACAATCGGAGAAGGAAAAGCAGCCTTTCCTCCCGGGGGAGCAGAGGCGGCCCGGCGG
GCAGAGGGAACCTGCAGAGGGCGGTTTCTCTCCTCTTTTCCTGTCCCACCCAGTCGGCCA
GCCCCCCCACCCCCACTCCCGACCGGCCTCGGCCGCTAACTCCGCGCGTCTCTCCGCCGC
TCCCTCACTTCGGTGTCCCCGGCAGGTCCCTGCGACCCCTGCCGTAGCCGCCCCCGTCGA
GTTGGGAAGGACGCGCGGAGCGGCGCCCGGCCCTTCGGCGGCAGCCCGTCCGACTGGTAA
GATCTGCACCTCCCGTCCACCTGACGCGATGACGAACCTCACAACCGTGCCTTCTCCAGG
AGAACTGATGAGCAGCCCAATTCTACGGCCCACTGAGGCCCCGTCCCCAGAAGCTGAAGC
CAGCACAGCACTCATTGCAGTTGTCATCACCGTGGTCTTCCTCACCCTGCTCTCTGTCGT
GGTCCTGATCTTCTTTTACCTGTACAAGAACAAAGGCAGCTACGTCACCTACGAACCTGC
CGAAGGCGAGCCCGGCGCCGTCCTCCAGATGGAGAGTAACTCCGCCAAGGGCAAGGAGAA
GGAGGAATACTTCATCTAATGGTTCCCGGGCCCCAAGGAGCTCATCCAGGCTCCAGTGCT
GACACACTATTTATTAGGTGAGAGTTTTATCTGAAACCGATGAGAAGCATCCATCGCTGT
GGGCAGACCGGAGCTCCTTCCAGGACCCAGGCCCAAATGCCAGCATCACAGACGCCAGGG
CCCAGAGACCCGGAGAAAGCGGCTCACGAAGTCTCGAGTCAGACCTTTGTCATACAGCTG
GTGTTTGTGATTGAGCGACGAGGTGGAGCCGTACCAGGCAGCCACCGGGTACTGCCTGGC
CATCGTCACTTTCTCCACAGCTCAGAGGGAAGGAGAGTTGGGGGTCACTGGTTGCTCCTG
CGTTCCCTACCTGGTCACCTAGCGACAGCCCGAGTGCAAATAGTGTCCCCTGGAAGCTCC
TCCCAGAGGCCGGAGCCCACAGTGAAAGGCCAGGCCGGGAGGGGCAGGAGGGCCGTGAAG
ACGTCACTGCTGAAGGGGCGGGCCACCTCCCTTAACCTGAGCCCTTCCTTCCCACAGTCC
CCGGCAACCCAGACGTAGGCTGTTTTTATCGGAATTAAAAATTTTCATTGATACAGAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCAGAGCCCGCGCTCTCCCAGCCTCGAGACAGGCGGGGGAGGAAGCGGCTCCAGTAAA
GTGACAATCGGAGAAGGAAAAGCAGCCTTTCCTCCCGGGGGAGCAGAGGCGGCCCGGCGG
GCAGAGGGAACCTGCAGAGGGCGGTTTCTCTCCTCTTTTCCTGTCCCACCCAGTCGGCCA
GCCCCCCCACCCCCACTCCCGACCGGCCTCGGCCGCTAACTCCGCGCGTCTCTCCGCCGC
TCCCTCACTTCGGTGTCCCCGGCAGGTCCCTGCGACCCCTGCCGTAGCCGCCCCCGTCGA
GTTGGGAAGGACGCGCGGAGCGGCGCCCGGCCCTTCGGCGGCAGCCCGTCCGACTGGTAA
GATCTGCACCTCCCGTCCACCTGACGCGATGACGAACCTCACAACCGTGCCTTCTCCAGG
AGAACTGATGAGCAGCCCAATTCTACGGCCCACTGAGGCCCCGTCCCCAGAAGCTGAAGC
CAGCACAGCACTCATTGCAGTTGTCATCACCGTGGTCTTCCTCACCCTGCTCTCTGTCGT
GGTCCTGATCTTCTTTTACCTGTACAAGAACAAAGGCAGCTACGTCACCTACGAACCTGC
CGAAGGCGAGCCCGGCGCCGTCCTCCAGATGGAGAGTAACTCCGCCAAGGGCAAGGAGAA
GGAGGAATACTTCATCTAATGGTTCCCGGGCCCCAAGGAGCTCATCCAGGCTCCAGTGCT
GACACACTATTTATTAGGTGAGAGTTTTATCTGAAACCGATGAGAAGCATCCATCGCTGT
GGGCAGACCGGAGCTCCTTCCAGGACCCAGGCCCAAATGCCAGCATCACAGACGCCAGGG
CCCAGAGACCCGGAGAAAGCGGCTCACGAAGTCTCGAGTCAGACCTTTGTCATACAGCTG
GTGTTTGTGATTGAGCGACGAGGTGGAGCCGTACCAGGCAGCCACCGGGTACTGCCTGGC
CATCGTCACTTTCTCCACAGCTCAGAGGGAAGGAGAGTTGGGGGTCACTGGTTGCTCCTG
CGTTCCCTACCTGGTCACCTAGCGACAGCCCGAGTGCAAATAGTGTCCCCTGGAAGCTCC
TCCCAGAGGCCGGAGCCCACAGTGAAAGGCCAGGCCGGGAGGGGCAGGAGGGCCGTGAAG
ACGTCACTGCTGAAGGGGCGGGCCACCTCCCTTAACCTGAGCCCTTCCTTCCCACAGTCC
CCGGCAACCCAGACGTAGGCTGTTTTTATCGGAATTAAAAATTTTCATTGATACAGAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q7TPF1_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7TPF1_RAT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               499-1259, gnl|bosTau2|chr5 (20706404-20707138)
               

               
               499-1259, gnl|Hg17|chr12 (49926172-49925402)
               

               
               499-1259, gnl|Mm7|chr15 (100607273-100606610)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               499-1259, gnl|bosTau2|chr5 (20706404-20707138)
               

               
               499-1259, gnl|Hg17|chr12 (49926172-49925402)
               

               
               499-1259, gnl|Mm7|chr15 (100607273-100606610)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               amn (0.417711)
               

               
               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               eje (0.0988338)

	499-1259, gnl\|bosTau2\|chr5 (20706404-20707138)
	499-1259, gnl\|Hg17\|chr12 (49926172-49925402)
	499-1259, gnl\|Mm7\|chr15 (100607273-100606610)

	amn (0.417711)
	ece (0.229305)
	nlu (0.191681)
	ton (0.1755)
	lnt (0.142308)
	nmm (0.132802)
	eje (0.0988338)