Non-Coding RNA Search

Ss1.1-Ova1-OVR010018E09.5

Sequence:


               
               TCGCTCGCTCGTCCTCACTGCCCGCGGTCCCGGCTCCAGGCACCATGTTCCGCGCGGGGC
CCCCCAGCCACACCCTCCGCCGGCTCCCCCTGCTGCAGCTGCTGCTGCTGGCACAGGCCT
TGGGGAGGGGGCTGGGCCGCGCCAACCCGGCCGGGGGCCCCCTGGAAGATGTAGTCATCG
AGAGGTACCACATCCCCAGGGTCTGTCCCCGGGAAGTGCAGATGGGGGATTTTGTGCGCT
ACCACTACAACGGTACTTTCGAGGATGGCAAGAAGTTTGACTCGAGCTATGACCGCCACA
CGTTGGTGGCCATCGTGGTGGGCGTGGGGCGCCTCATCACCGGCATGGACCGGGGCCTCA
TGGGCATGTGCGTCAATGAGCGGCGACGCCTCATCGTGCCTCCGCACCTGGGCTACGGCA
GCATCGGCGTGGCGGGGCTCATTCCCCCGGATGCCACCCTCTACTTCGACGTGGTCCTGC
TGGATGTGTGGAACAAGGCGGACACTGTGCAGGTGACCACCTTGCTGCGCCCACCTCACT
GCCCCCGCATGGTCCAGGACAGCGCTTGATAATCAAACCACTACAATGGCACGCTGCTGG
ATGGCACCGCCTTCGACACCAGCTACAGCAGGGGCGGCACTTATGATACCTACGTGGGCT
CTGGCTGGCTAATCAAGGGCATGGATCAGGGGCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCTCGCTCGTCCTCACTGCCCGCGGTCCCGGCTCCAGGCACCATGTTCCGCGCGGGGC
CCCCCAGCCACACCCTCCGCCGGCTCCCCCTGCTGCAGCTGCTGCTGCTGGCACAGGCCT
TGGGGAGGGGGCTGGGCCGCGCCAACCCGGCCGGGGGCCCCCTGGAAGATGTAGTCATCG
AGAGGTACCACATCCCCAGGGTCTGTCCCCGGGAAGTGCAGATGGGGGATTTTGTGCGCT
ACCACTACAACGGTACTTTCGAGGATGGCAAGAAGTTTGACTCGAGCTATGACCGCCACA
CGTTGGTGGCCATCGTGGTGGGCGTGGGGCGCCTCATCACCGGCATGGACCGGGGCCTCA
TGGGCATGTGCGTCAATGAGCGGCGACGCCTCATCGTGCCTCCGCACCTGGGCTACGGCA
GCATCGGCGTGGCGGGGCTCATTCCCCCGGATGCCACCCTCTACTTCGACGTGGTCCTGC
TGGATGTGTGGAACAAGGCGGACACTGTGCAGGTGACCACCTTGCTGCGCCCACCTCACT
GCCCCCGCATGGTCCAGGACAGCGCTTGATAATCAAACCACTACAATGGCACGCTGCTGG
ATGGCACCGCCTTCGACACCAGCTACAGCAGGGGCGGCACTTATGATACCTACGTGGGCT
CTGGCTGGCTAATCAAGGGCATGGATCAGGGGCTGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               117-276, - strand, RNAz p=0.975573

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-276, - strand, RNAz p=0.975573

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               53-147, + strand, RNAmicro p=0.995056

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               53-147, + strand, RNAmicro p=0.995056

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-289, gnl|bosTau2|chr23 (151123-150832)
               

               
               4-289, gnl|Hg17|chr17 (37222772-37223060)
               

               
               4-289, gnl|Mm7|chr11 (100524788-100525067)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-289, gnl|bosTau2|chr23 (151123-150832)
               

               
               4-289, gnl|Hg17|chr17 (37222772-37223060)
               

               
               4-289, gnl|Mm7|chr11 (100524788-100525067)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eep (0.245128)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.245128)
               

               
               jca (0.11396)

	4-289, gnl\|bosTau2\|chr23 (151123-150832)
	4-289, gnl\|Hg17\|chr17 (37222772-37223060)
	4-289, gnl\|Mm7\|chr11 (100524788-100525067)