Non-Coding RNA Search

Ss1.1-Ova1-OVR010018G10.5

Sequence:


               
               AGGCGCCGACGGTTCGAATTCCGGACAAGAAGCAATTTAGCTGCGCGAGCGGCGGCGCCA
TGGACGTTGAGCGGAGCCGCTTCCCCTACTGTGTGGTGTGGACGCCCATCCCGGTGCTCA
CGTGGTTTTTCCCCATCATCGGCCACATGGGCATCTGCACATCCACAGGAGTCATTCGGG
ACTTTGCAGGCCCCTACTTTGTGTCGGAAGACAACATGGCCTTTGGGAAGCCCGCCAAGT
ACTGGAAGCTGGACCCTGCTCAGGTTTACGCCAGCGGGCCCAATGCCTGGGACACCGCTG
TGCACGACGCCTCTGAGGAGTACAAGCACCGCATGCACAGTCTCTGCTGTGACAACTGCC
ACTCACACGTGGCCTTGGCCCTGAACCTGATGCGCTACAACAACAGCACCAACTGGAACA
TGGTGACGCTCTGCTTCTTCTGCCTGCTCTACGGGAAGTACGTCAGCATTGGCGCCTTCG
TGAAGACCTGGCTGCCCTTTGTCCTCCTCCTGGGCATCATCCTAACCGTCAGCCTGGTCT
TCAACCTGCGGTGACAGCCGCCCCGCCGCCCTGGACCCGCCAGGCTCCTGAAGAGGCAGC
CGCCATCCCTTTTCATTCCCGATTCTTTCTTCTCACCCCGACAGGCAGGGATGGGCCTGC
TGGTCTTGACCGCAGGGGTCTGGGCTACAGGGGATGGAATAAGGGCTGAGGATGGGCCTG
GGGCGGAGGGGTTTGCATTTCGTGTCTCACTGGTCACTCCGCAGCTCCCTGTGCCCCCTT
CCCAGGCTTGTGACACACACACACACCCCGGCCCAGACACCCTTTGTTGGAAGAGCCTTA
GCTTCCCTCTGTAGAGCTGCGTCTGCCACTGCCCACTGGGCTCCCTCTGCCTCAGCCCAG
AACCTGGTTGGGGAGGGGAGGATACTTGAACCCAGCGGACAGGCGGCATGGGGCCAGAGC
TGGATTCGAAGTCCATCCTCCTGCCAGGGCTCTCAGCTGCCCGGGGTTGATGGGCCCCCC
TTGGGATGTTTGGCCAAGGCTGCACCAGGGGTGGTTGGCGCCCCACTCCTAGCATCCTCC
AGCCCTGCAGCCCCCTCCTCCCACTCCCCTGTGGCCTCCATGCACTTGGGCCCGCCCCCC
GCTGCAGTTTGGGCGGGGCTGCCCCATCCAGGCTGGGGAGATGAGTGACACTGTCATATC
CAGAGTGACCCTGCAGATTAGAGCCATACAAATGAGGCTTGACCTTGGCCCCAGGTGTGG
GCCTGGCACTGGTGATGGGACCGCTTGGGTCAGCGATGTCAGGGGGCCCTCAGAGCAGCC
AGTGCCACCAGGGAGCTGTTGGTTCCCGCCTACCACGGCTCCCCCTTCTCTTCAAGTTGT
GAGATGGGGCCCGTGCTGCCCCCTCACCCCAGCTCCATGAATTCCTTTGTGTGGGGCCCC
CTGAGCAGGACAATAAAGAGTTTTAATTCCGAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCGCCGACGGTTCGAATTCCGGACAAGAAGCAATTTAGCTGCGCGAGCGGCGGCGCCA
TGGACGTTGAGCGGAGCCGCTTCCCCTACTGTGTGGTGTGGACGCCCATCCCGGTGCTCA
CGTGGTTTTTCCCCATCATCGGCCACATGGGCATCTGCACATCCACAGGAGTCATTCGGG
ACTTTGCAGGCCCCTACTTTGTGTCGGAAGACAACATGGCCTTTGGGAAGCCCGCCAAGT
ACTGGAAGCTGGACCCTGCTCAGGTTTACGCCAGCGGGCCCAATGCCTGGGACACCGCTG
TGCACGACGCCTCTGAGGAGTACAAGCACCGCATGCACAGTCTCTGCTGTGACAACTGCC
ACTCACACGTGGCCTTGGCCCTGAACCTGATGCGCTACAACAACAGCACCAACTGGAACA
TGGTGACGCTCTGCTTCTTCTGCCTGCTCTACGGGAAGTACGTCAGCATTGGCGCCTTCG
TGAAGACCTGGCTGCCCTTTGTCCTCCTCCTGGGCATCATCCTAACCGTCAGCCTGGTCT
TCAACCTGCGGTGACAGCCGCCCCGCCGCCCTGGACCCGCCAGGCTCCTGAAGAGGCAGC
CGCCATCCCTTTTCATTCCCGATTCTTTCTTCTCACCCCGACAGGCAGGGATGGGCCTGC
TGGTCTTGACCGCAGGGGTCTGGGCTACAGGGGATGGAATAAGGGCTGAGGATGGGCCTG
GGGCGGAGGGGTTTGCATTTCGTGTCTCACTGGTCACTCCGCAGCTCCCTGTGCCCCCTT
CCCAGGCTTGTGACACACACACACACCCCGGCCCAGACACCCTTTGTTGGAAGAGCCTTA
GCTTCCCTCTGTAGAGCTGCGTCTGCCACTGCCCACTGGGCTCCCTCTGCCTCAGCCCAG
AACCTGGTTGGGGAGGGGAGGATACTTGAACCCAGCGGACAGGCGGCATGGGGCCAGAGC
TGGATTCGAAGTCCATCCTCCTGCCAGGGCTCTCAGCTGCCCGGGGTTGATGGGCCCCCC
TTGGGATGTTTGGCCAAGGCTGCACCAGGGGTGGTTGGCGCCCCACTCCTAGCATCCTCC
AGCCCTGCAGCCCCCTCCTCCCACTCCCCTGTGGCCTCCATGCACTTGGGCCCGCCCCCC
GCTGCAGTTTGGGCGGGGCTGCCCCATCCAGGCTGGGGAGATGAGTGACACTGTCATATC
CAGAGTGACCCTGCAGATTAGAGCCATACAAATGAGGCTTGACCTTGGCCCCAGGTGTGG
GCCTGGCACTGGTGATGGGACCGCTTGGGTCAGCGATGTCAGGGGGCCCTCAGAGCAGCC
AGTGCCACCAGGGAGCTGTTGGTTCCCGCCTACCACGGCTCCCCCTTCTCTTCAAGTTGT
GAGATGGGGCCCGTGCTGCCCCCTCACCCCAGCTCCATGAATTCCTTTGTGTGGGGCCCC
CTGAGCAGGACAATAAAGAGTTTTAATTCCGAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|55961187|emb|CAI14793.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|55961187|emb|CAI14793.1|

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               464-878, gnl|bosTau2|chr2 (78058172-78057758)
               

               
               464-878, gnl|Hg17|chr1 (27346009-27346428)
               

               
               464-878, gnl|Mm7|chr4 (132645357-132644971)
               


               
               1012-1470, gnl|bosTau2|chr2 (78057567-78057104)
               

               
               1012-1470, gnl|Hg17|chr1 (27346596-27347032)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               464-878, gnl|bosTau2|chr2 (78058172-78057758)
               

               
               464-878, gnl|Hg17|chr1 (27346009-27346428)
               

               
               464-878, gnl|Mm7|chr4 (132645357-132644971)
               


               
               1012-1470, gnl|bosTau2|chr2 (78057567-78057104)
               

               
               1012-1470, gnl|Hg17|chr1 (27346596-27347032)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               cbr (4.86307)
               

               
               cag (0.302389)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (4.86307)
               

               
               cag (0.302389)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	464-878, gnl\|bosTau2\|chr2 (78058172-78057758)
	464-878, gnl\|Hg17\|chr1 (27346009-27346428)
	464-878, gnl\|Mm7\|chr4 (132645357-132644971)

	1012-1470, gnl\|bosTau2\|chr2 (78057567-78057104)
	1012-1470, gnl\|Hg17\|chr1 (27346596-27347032)

	cbr (4.86307)
	cag (0.302389)
	fbs (0.175346)
	fhi (0.169578)
	nca (0.136874)
	pla (0.133672)
	eru (0.120048)
	cty (0.10408)
	jej (0.0989218)
	eje (0.0988338)