Non-Coding RNA Search

Ss1.1-Ova1-OVR010018H10.5

Sequence:


               
               TTTCTTTCGAGGTGAAAACAGCCGCAGAAGTCGGGGCCCTGCGAGAGAGCGGGGGGCGTG
GGGGTCCCAGGATCAGGGCGGGGCCCCTCCCGAGCCGGGGGTTGCGGACCTGGGTCTCCT
GGGGGGCGATCGTCCAACAAAGGATCCCTGGGGCGCCCGCCCTCGAGGGCCTCCCTGTCC
CCGGATCCTGCCCCCCCCGGCATTCCGGGGCTCCACAGCCAGACCCCGCCGTCAGCTGCT
CGCAGCAGCCGAGAGGTCCGGGAAAGTTTCTTTCGAGGTGCGGCCGGGAGCGGCCATGTC
CCACGGCCCCAAGCAGCCCGGCGCGGCTGCCGCGTCGGCGAGCGGTAAGACTCCAGGACA
GCACGGGGGATTCGTGGTTGCTGTCAAGCAAGAGCGCATCGAGGGCCCGCGGGCAGGAGA
GAAGGGGTCCCACGAGGAGGAGCCGGTGAAGAAGCGCGGCTGGCCCAAGGGCAAGAAGCG
GAAGAAGATCCTACCCAATGGGCCTAAGGCACCGGTCACCGGCTACGTGCGCTTCCTGAA
CGAGCGGCGTGAGCAGATTCGTACTCGCCACCCAGACCTGCCTTTTCCCGAGATTACCAA
GATGCTGGGCGCGGAGTGGAGCAAGCTGCAGCCAGCGGAGAAGCAGCGGTACCTGGATGA
GGCCGAACGGGAGAAGCAGCAGTACATGAAGGAGCTGAGAGCGTACCAGCAGTCCGAAGC
CTACAAGATGTGCACGGAGAAGATACAGGAAAAGAAGATCAAGAAAGAAGACTCCGGCTC
CGGGCTCATGAATACCCTTTTGAATGGACACAAGGGTGGGGACTGTGACGGCTTTTCCAC
CTTCGACGTCCCCATCTTCACTGAAGAATTCTTGGACCAAAACAAAGCTCGGGAGGCGGA
GCTGCGGCGCCTGCGGAAGATGAACGTGGCCTTCGAGGAGCAGAATGCGGTGCTACAGAG
GCACACACAGAGCATGAGCAGCGCGCGCGAGCGCCTGGAGCAGGAGCTGGCCTTGGAGGA
GCGGCGGACGCTGGCACTACAGCAGCAGCTCCAGGCGGTGCGCCAGGCGCTCACCGCCAG
CTTCGCGTCGTTGCCGGTGCCCGGCACAGGCGAGACGCCCACGCTCAGCACCCTGGACTT
CTACATGGCCCGGCTGCACGGCGCCATCGAGCGCGACCCCGCCCAGCACGAGAAGCTTAT
CGTCCGCATCAAGGAGATCCTGGCCCAGGTCGCCAGTGAGCATCTATGAGGGTGTTGGCA
GCCCCATGGATCCAGAGAAGACCAAGCTCCAGTCCCGACCCCTCCCCCACCCCGTGGAAG
AAGGGGTAGGGGTCCCTTGTTTGGGGCCAGGCCCAATCCTGCACCTTGGGGGCTCCAGCC
CCCCTCGAATTAAATTTCTACAGCATCCCTCTAGCTTTCCATCTCCCCAGCACCCCAACT
GAGAAAAGTCACCCACCATGCTCTGCACACACACACACAACCCCAGGGCTTCGGAGGGCA
GGTCACAACACGTGGATGTGGGAACACTGTGCATGGGCAGCATAACCCAGGACAGGAGGA
GAACCCACAGCAGCTCACACCCACTGTGGGGAGTCACCCTACAGCGGCTCTCCAGGACCA
GCCCCCAAACAACAAGGCAGAGAAAACCCACAGCCGACACACTGGGACTCCTGGCAGGTG
TAACCATAAGTGCCCACACAGGCTGGCACCCTGCAGGGACACACCCATACTCTGGCAGGG
GGCCCTCTGCCTGTCGCCTTCACATTCCTCCACTCCCACACTCATTCAGCTGAGGGGCCC
TCCTGGAGGCAGCCCTTTGACCACCACTCAATCTGGACTTTTTAAATTAAAAAAGTGGAA
TTTGAATTTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCTTTCGAGGTGAAAACAGCCGCAGAAGTCGGGGCCCTGCGAGAGAGCGGGGGGCGTG
GGGGTCCCAGGATCAGGGCGGGGCCCCTCCCGAGCCGGGGGTTGCGGACCTGGGTCTCCT
GGGGGGCGATCGTCCAACAAAGGATCCCTGGGGCGCCCGCCCTCGAGGGCCTCCCTGTCC
CCGGATCCTGCCCCCCCCGGCATTCCGGGGCTCCACAGCCAGACCCCGCCGTCAGCTGCT
CGCAGCAGCCGAGAGGTCCGGGAAAGTTTCTTTCGAGGTGCGGCCGGGAGCGGCCATGTC
CCACGGCCCCAAGCAGCCCGGCGCGGCTGCCGCGTCGGCGAGCGGTAAGACTCCAGGACA
GCACGGGGGATTCGTGGTTGCTGTCAAGCAAGAGCGCATCGAGGGCCCGCGGGCAGGAGA
GAAGGGGTCCCACGAGGAGGAGCCGGTGAAGAAGCGCGGCTGGCCCAAGGGCAAGAAGCG
GAAGAAGATCCTACCCAATGGGCCTAAGGCACCGGTCACCGGCTACGTGCGCTTCCTGAA
CGAGCGGCGTGAGCAGATTCGTACTCGCCACCCAGACCTGCCTTTTCCCGAGATTACCAA
GATGCTGGGCGCGGAGTGGAGCAAGCTGCAGCCAGCGGAGAAGCAGCGGTACCTGGATGA
GGCCGAACGGGAGAAGCAGCAGTACATGAAGGAGCTGAGAGCGTACCAGCAGTCCGAAGC
CTACAAGATGTGCACGGAGAAGATACAGGAAAAGAAGATCAAGAAAGAAGACTCCGGCTC
CGGGCTCATGAATACCCTTTTGAATGGACACAAGGGTGGGGACTGTGACGGCTTTTCCAC
CTTCGACGTCCCCATCTTCACTGAAGAATTCTTGGACCAAAACAAAGCTCGGGAGGCGGA
GCTGCGGCGCCTGCGGAAGATGAACGTGGCCTTCGAGGAGCAGAATGCGGTGCTACAGAG
GCACACACAGAGCATGAGCAGCGCGCGCGAGCGCCTGGAGCAGGAGCTGGCCTTGGAGGA
GCGGCGGACGCTGGCACTACAGCAGCAGCTCCAGGCGGTGCGCCAGGCGCTCACCGCCAG
CTTCGCGTCGTTGCCGGTGCCCGGCACAGGCGAGACGCCCACGCTCAGCACCCTGGACTT
CTACATGGCCCGGCTGCACGGCGCCATCGAGCGCGACCCCGCCCAGCACGAGAAGCTTAT
CGTCCGCATCAAGGAGATCCTGGCCCAGGTCGCCAGTGAGCATCTATGAGGGTGTTGGCA
GCCCCATGGATCCAGAGAAGACCAAGCTCCAGTCCCGACCCCTCCCCCACCCCGTGGAAG
AAGGGGTAGGGGTCCCTTGTTTGGGGCCAGGCCCAATCCTGCACCTTGGGGGCTCCAGCC
CCCCTCGAATTAAATTTCTACAGCATCCCTCTAGCTTTCCATCTCCCCAGCACCCCAACT
GAGAAAAGTCACCCACCATGCTCTGCACACACACACACAACCCCAGGGCTTCGGAGGGCA
GGTCACAACACGTGGATGTGGGAACACTGTGCATGGGCAGCATAACCCAGGACAGGAGGA
GAACCCACAGCAGCTCACACCCACTGTGGGGAGTCACCCTACAGCGGCTCTCCAGGACCA
GCCCCCAAACAACAAGGCAGAGAAAACCCACAGCCGACACACTGGGACTCCTGGCAGGTG
TAACCATAAGTGCCCACACAGGCTGGCACCCTGCAGGGACACACCCATACTCTGGCAGGG
GGCCCTCTGCCTGTCGCCTTCACATTCCTCCACTCCCACACTCATTCAGCTGAGGGGCCC
TCCTGGAGGCAGCCCTTTGACCACCACTCAATCTGGACTTTTTAAATTAAAAAAGTGGAA
TTTGAATTTCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               HM20B_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               HM20B_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               437-552, - strand, RNAz p=0.999728
               

               
               945-1064, - strand, RNAz p=0.542855
               

               
               1261-1402, - strand, RNAz p=0.960011

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               437-552, - strand, RNAz p=0.999728
               

               
               945-1064, - strand, RNAz p=0.542855
               

               
               1261-1402, - strand, RNAz p=0.960011

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               240-1852, gnl|bosTau2|chr24 (29346394-29348012)
               

               
               240-1852, gnl|Hg17|chr19 (3523956-3530060)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               240-1852, gnl|bosTau2|chr24 (29346394-29348012)
               

               
               240-1852, gnl|Hg17|chr19 (3523956-3530060)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               pty (0.285429)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.285429)
               

               
               hea (0.204499)
               

               
               nbm (0.198649)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	437-552, - strand, RNAz p=0.999728
	945-1064, - strand, RNAz p=0.542855
	1261-1402, - strand, RNAz p=0.960011

	240-1852, gnl\|bosTau2\|chr24 (29346394-29348012)
	240-1852, gnl\|Hg17\|chr19 (3523956-3530060)

	pty (0.285429)
	hea (0.204499)
	nbm (0.198649)
	ill (0.175593)
	eye (0.170503)
	cut (0.169924)
	cje (0.165235)
	cli (0.152812)
	hyp (0.142837)
	lnt (0.142308)
	pla (0.133672)
	ese (0.126502)
	eru (0.120048)
	clu (0.119646)
	cty (0.10408)
	jej (0.0989218)