Non-Coding RNA Search

Ss1.1-Ova1-OVR010019C01.5

Sequence:


               
               TCCGGATGCATAGTGTGAACTCTGGCTCTTCCGAAGCGGCCCAACCTGATACAGAAAACG
AAATCCCCCAAACAGCAGATGCGGCTGCAGATCAGAGCCCCGCAGAAAGCCCCCCCACTT
CTCCTTCATCAGGGTCGCGGGGCATGCTGTCAGCCATCACCAACGCGGTTCAGAACACAG
GTAAAAGCGTCTTGACGGGTGGTCTTGATGCTTTGGAATTCATTGGCAAGAAAACCATGA
ATGTCCTTGCGGAAAGTGACCCAGGTTTTAAGCGGACCAAGACACTCATGGAGAGGACCG
TTTCCTTGTCTCAGATGCTGCGGGAAGCCAAGGAGAAGGAGAAGCAGAGGCTGGCCCAGC
AGCTCACAGCCGAGAGGACCGCGCACTATGGGATGCTGTTTGATGAGTATCAAGGTTTGT
CACACCTGGAAGCCCTGGAAATCCTGTCCAATGAAAGTGAAGGCAAGGTTCAGTCATTTT
TAGCATCACTTGATGGAGAGAAGCTGGAACTCTTAAAAAATGACCTCATTTCCATTAAAG
ACATCTTTGCTGCCAAAGAACTAGAGAATGAAGAGAATCAAGAAGTGCAAGGCATAGAAG
AAAAGGGAGAAGAATTTGCTAGCATGCTTACAGAGCTTCTCTTTGAATTACATGTTGCGG
CCACGCCTGACAAACTCAATAAGGCGATGAAAAAAGCTCATGACTGGGTGGAAGAGGATC
AAACCGTGGTGCCAGTAGATGTGGCTGAAGAGTCAGAGGACAAAACTAAGAAAGAAGAAA
AGGAAGAGAACGCCGAAGGTCCCGAAGAAAAGAAGGAAGAAAGAAAAACTAAGACAGTTG
AGGAAGTATACATGCTGTCCATTGAAAGCCTGGCGGAAGTAACAGCTCGCTGTATTGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCGGATGCATAGTGTGAACTCTGGCTCTTCCGAAGCGGCCCAACCTGATACAGAAAACG
AAATCCCCCAAACAGCAGATGCGGCTGCAGATCAGAGCCCCGCAGAAAGCCCCCCCACTT
CTCCTTCATCAGGGTCGCGGGGCATGCTGTCAGCCATCACCAACGCGGTTCAGAACACAG
GTAAAAGCGTCTTGACGGGTGGTCTTGATGCTTTGGAATTCATTGGCAAGAAAACCATGA
ATGTCCTTGCGGAAAGTGACCCAGGTTTTAAGCGGACCAAGACACTCATGGAGAGGACCG
TTTCCTTGTCTCAGATGCTGCGGGAAGCCAAGGAGAAGGAGAAGCAGAGGCTGGCCCAGC
AGCTCACAGCCGAGAGGACCGCGCACTATGGGATGCTGTTTGATGAGTATCAAGGTTTGT
CACACCTGGAAGCCCTGGAAATCCTGTCCAATGAAAGTGAAGGCAAGGTTCAGTCATTTT
TAGCATCACTTGATGGAGAGAAGCTGGAACTCTTAAAAAATGACCTCATTTCCATTAAAG
ACATCTTTGCTGCCAAAGAACTAGAGAATGAAGAGAATCAAGAAGTGCAAGGCATAGAAG
AAAAGGGAGAAGAATTTGCTAGCATGCTTACAGAGCTTCTCTTTGAATTACATGTTGCGG
CCACGCCTGACAAACTCAATAAGGCGATGAAAAAAGCTCATGACTGGGTGGAAGAGGATC
AAACCGTGGTGCCAGTAGATGTGGCTGAAGAGTCAGAGGACAAAACTAAGAAAGAAGAAA
AGGAAGAGAACGCCGAAGGTCCCGAAGAAAAGAAGGAAGAAAGAAAAACTAAGACAGTTG
AGGAAGTATACATGCTGTCCATTGAAAGCCTGGCGGAAGTAACAGCTCGCTGTATTGAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34365149|emb|CAE45923.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34365149|emb|CAE45923.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               180-298, - strand, RNAz p=0.631164

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               180-298, - strand, RNAz p=0.631164

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               180-317, gnl|bosTau2|chr6 (29869286-29869149)
               

               
               180-317, gnl|canFam2|chr3 (76283574-76283425)
               

               
               180-317, gnl|danRer3|chr1 (14502753-14502605)
               

               
               180-317, gnl|dasNov1|scaffold_1072 (120755-120606)
               

               
               180-317, gnl|echTel1|scaffold_323131 (42825-42972)
               

               
               180-317, gnl|fr1|chrUn (253069611-253069461)
               

               
               180-317, gnl|galGal2|chrUn (134720237-134720384)
               

               
               180-317, gnl|hg17|chr4 (38732773-38732922)
               

               
               180-317, gnl|Hg17|chr4 (38732779-38732916)
               

               
               180-317, gnl|loxAfr1|scaffold_21433 (5383-5527)
               

               
               180-317, gnl|mm7|chr5 (64363793-64363942)
               

               
               180-317, gnl|Mm7|chr5 (64363799-64363936)
               

               
               180-317, gnl|monDom2|scaffold_26 (3834084-3834233)
               

               
               180-317, gnl|oryCun1|scaffold_181647 (86750-86601)
               

               
               180-317, gnl|panTro1|chr3 (41410365-41410514)
               

               
               180-317, gnl|rheMac2|chr5 (33878491-33878640)
               

               
               180-317, gnl|rn3|chr14 (46027657-46027508)
               

               
               180-317, gnl|tetNig1|chrUn_random (51213544-51213685)
               

               
               180-317, gnl|xenTro1|scaffold_152 (1121499-1121642)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               180-317, gnl|bosTau2|chr6 (29869286-29869149)
               

               
               180-317, gnl|canFam2|chr3 (76283574-76283425)
               

               
               180-317, gnl|danRer3|chr1 (14502753-14502605)
               

               
               180-317, gnl|dasNov1|scaffold_1072 (120755-120606)
               

               
               180-317, gnl|echTel1|scaffold_323131 (42825-42972)
               

               
               180-317, gnl|fr1|chrUn (253069611-253069461)
               

               
               180-317, gnl|galGal2|chrUn (134720237-134720384)
               

               
               180-317, gnl|hg17|chr4 (38732773-38732922)
               

               
               180-317, gnl|Hg17|chr4 (38732779-38732916)
               

               
               180-317, gnl|loxAfr1|scaffold_21433 (5383-5527)
               

               
               180-317, gnl|mm7|chr5 (64363793-64363942)
               

               
               180-317, gnl|Mm7|chr5 (64363799-64363936)
               

               
               180-317, gnl|monDom2|scaffold_26 (3834084-3834233)
               

               
               180-317, gnl|oryCun1|scaffold_181647 (86750-86601)
               

               
               180-317, gnl|panTro1|chr3 (41410365-41410514)
               

               
               180-317, gnl|rheMac2|chr5 (33878491-33878640)
               

               
               180-317, gnl|rn3|chr14 (46027657-46027508)
               

               
               180-317, gnl|tetNig1|chrUn_random (51213544-51213685)
               

               
               180-317, gnl|xenTro1|scaffold_152 (1121499-1121642)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sug (0.127291)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sug (0.127291)
               

               
               med (0.116252)

	180-317, gnl\|bosTau2\|chr6 (29869286-29869149)
	180-317, gnl\|canFam2\|chr3 (76283574-76283425)
	180-317, gnl\|danRer3\|chr1 (14502753-14502605)
	180-317, gnl\|dasNov1\|scaffold_1072 (120755-120606)
	180-317, gnl\|echTel1\|scaffold_323131 (42825-42972)
	180-317, gnl\|fr1\|chrUn (253069611-253069461)
	180-317, gnl\|galGal2\|chrUn (134720237-134720384)
	180-317, gnl\|hg17\|chr4 (38732773-38732922)
	180-317, gnl\|Hg17\|chr4 (38732779-38732916)
	180-317, gnl\|loxAfr1\|scaffold_21433 (5383-5527)
	180-317, gnl\|mm7\|chr5 (64363793-64363942)
	180-317, gnl\|Mm7\|chr5 (64363799-64363936)
	180-317, gnl\|monDom2\|scaffold_26 (3834084-3834233)
	180-317, gnl\|oryCun1\|scaffold_181647 (86750-86601)
	180-317, gnl\|panTro1\|chr3 (41410365-41410514)
	180-317, gnl\|rheMac2\|chr5 (33878491-33878640)
	180-317, gnl\|rn3\|chr14 (46027657-46027508)
	180-317, gnl\|tetNig1\|chrUn_random (51213544-51213685)
	180-317, gnl\|xenTro1\|scaffold_152 (1121499-1121642)