Non-Coding RNA Search

Ss1.1-Ova1-OVR010019C04.5

Sequence:


               
               ACTTGCAGCGCGGACCCAGGCACCCGACCGCGGACCTCGGCGCGGAGCTCGGAGCCCCGC
CCGCGGCCGAGCAGGAGCGGCGGCCCCGGGGCCCCAGCCGCGCGGGACCAGGTGTTCACC
TGCTGAGTCCGACACACTCCCCTCCCCGAGATCTGCAGGGACCCAGAGCCTGAGACCTTC
TCCCACTTCTCCAGGTGGGCAGCCTGCCATGAGGGGGAGAGCCAGCTGAGCACATCAGGA
CGTCTGGATTTGGCCAGAAGACCGGACCTCTCCCCCTGTCAGGACTTCTCAGAGACCGCT
CTGCCATGACCACGGCGCGGTGCCGGCCCACGTGGGACCTGGCCCTCGACCCGCTGGTGT
CCTGCAAGCTGTGCCTCGGCGAGTACCCGGTGGAGCAGATGACAACCATCGCCCAGTGCC
AGTGCATCTTCTGTACCCTGTGCCTGAAACAGTATGTGGAGCTCTTGATCAAAGAAGGAT
TAGAAACTGCCATTAGCTGCCCGGACGCTGCCTGCCCCAGACAGGGCCACCTGCAGGAGA
ATGAGATTGAGTGCATGGTAGCAGCTGAAATTATGCAAAGATACAAAAAGCTACAGTTTG
AACGAGGTAGGTGTCCCAGTGTCTTAGCTGGTCATGACTTCTGTGACAGAATCCAGGGAA
CGTGGGGCACTGCTTTTGGTGGATAGGACTGTGCGTCCTTTGCCTGCAGCAGGAGGTGGA
AAGATGCATCTAAATGAGACTTCTGAAGTTTCCCTGTCATTTGAAGTCTCTGCAGAGTTT
GCAGCTGGAAGATGGCCTCTGTTGGCAGCAGGTCTCATCGGTCACAGGGAGGATCCATGC
AACACAACTTGCTTCTGGGAATTTGGGACTATGGGGTGCCTTTATGAGACCCTCATGGGG
CATGCATCCTTCAGCCAGTTAAGGCCTATGGTTGGAGGACTACCTCTTTGAACTTCGTGG
AATGTAAAAGCTACAAAGGCGTGGAAGGACGTGCCGAGGTCAGGCAGAGGGGAACGGGGA
CAGTCACCATCCTGACCACACGTCCGTCCACCTAGTGCAACCCAGATCTCGTTTCGCCAG
GTCTCACGGCTGCCTGGCAAGCTTGTCCATCTCATGCCTGACACGGCGGGGGCCAGCTGA
CGTGCCCTGATTTCTGTCTCTGGCGGGTGGTGGGGTGGGGAGTGGATAAGGTCCCCCCGC
TCCCCACGGTGGCCCGGGCAGCCCTCCTGACTGGATCCGGGCCTCTCCAGCATTAAGACA
CGAGAGCCTTTCAGGACGGGTCTCTCTCTGCTCTCCGACACACACCAGGATCACAGCGTG
GTGTTTTGGAGCCTGTAGGTTCTGGGTGGCCTTGTTCCCACATGTATTCTGGACCTTGGA
CTCAGCTGAAAAGCAGCAGAGTGACAGAAAGGGTTGATGAAGTCCTATAGGTAAGACTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTGCAGCGCGGACCCAGGCACCCGACCGCGGACCTCGGCGCGGAGCTCGGAGCCCCGC
CCGCGGCCGAGCAGGAGCGGCGGCCCCGGGGCCCCAGCCGCGCGGGACCAGGTGTTCACC
TGCTGAGTCCGACACACTCCCCTCCCCGAGATCTGCAGGGACCCAGAGCCTGAGACCTTC
TCCCACTTCTCCAGGTGGGCAGCCTGCCATGAGGGGGAGAGCCAGCTGAGCACATCAGGA
CGTCTGGATTTGGCCAGAAGACCGGACCTCTCCCCCTGTCAGGACTTCTCAGAGACCGCT
CTGCCATGACCACGGCGCGGTGCCGGCCCACGTGGGACCTGGCCCTCGACCCGCTGGTGT
CCTGCAAGCTGTGCCTCGGCGAGTACCCGGTGGAGCAGATGACAACCATCGCCCAGTGCC
AGTGCATCTTCTGTACCCTGTGCCTGAAACAGTATGTGGAGCTCTTGATCAAAGAAGGAT
TAGAAACTGCCATTAGCTGCCCGGACGCTGCCTGCCCCAGACAGGGCCACCTGCAGGAGA
ATGAGATTGAGTGCATGGTAGCAGCTGAAATTATGCAAAGATACAAAAAGCTACAGTTTG
AACGAGGTAGGTGTCCCAGTGTCTTAGCTGGTCATGACTTCTGTGACAGAATCCAGGGAA
CGTGGGGCACTGCTTTTGGTGGATAGGACTGTGCGTCCTTTGCCTGCAGCAGGAGGTGGA
AAGATGCATCTAAATGAGACTTCTGAAGTTTCCCTGTCATTTGAAGTCTCTGCAGAGTTT
GCAGCTGGAAGATGGCCTCTGTTGGCAGCAGGTCTCATCGGTCACAGGGAGGATCCATGC
AACACAACTTGCTTCTGGGAATTTGGGACTATGGGGTGCCTTTATGAGACCCTCATGGGG
CATGCATCCTTCAGCCAGTTAAGGCCTATGGTTGGAGGACTACCTCTTTGAACTTCGTGG
AATGTAAAAGCTACAAAGGCGTGGAAGGACGTGCCGAGGTCAGGCAGAGGGGAACGGGGA
CAGTCACCATCCTGACCACACGTCCGTCCACCTAGTGCAACCCAGATCTCGTTTCGCCAG
GTCTCACGGCTGCCTGGCAAGCTTGTCCATCTCATGCCTGACACGGCGGGGGCCAGCTGA
CGTGCCCTGATTTCTGTCTCTGGCGGGTGGTGGGGTGGGGAGTGGATAAGGTCCCCCCGC
TCCCCACGGTGGCCCGGGCAGCCCTCCTGACTGGATCCGGGCCTCTCCAGCATTAAGACA
CGAGAGCCTTTCAGGACGGGTCTCTCTCTGCTCTCCGACACACACCAGGATCACAGCGTG
GTGTTTTGGAGCCTGTAGGTTCTGGGTGGCCTTGTTCCCACATGTATTCTGGACCTTGGA
CTCAGCTGAAAAGCAGCAGAGTGACAGAAAGGGTTGATGAAGTCCTATAGGTAAGACTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56966900|pdb|1WIM|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56966900|pdb|1WIM|A

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               293-440, gnl|bosTau2|chr11 (70764352-70764502)
               

               
               293-440, gnl|Hg17|chr2 (7087643-7087790)
               

               
               293-440, gnl|Mm7|chr12 (24175273-24175126)
               


               
               544-1043, gnl|bosTau2|chr11 (70773449-70773964)
               

               
               544-1043, gnl|Hg17|chr2 (7105439-7105945)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               293-440, gnl|bosTau2|chr11 (70764352-70764502)
               

               
               293-440, gnl|Hg17|chr2 (7087643-7087790)
               

               
               293-440, gnl|Mm7|chr12 (24175273-24175126)
               


               
               544-1043, gnl|bosTau2|chr11 (70773449-70773964)
               

               
               544-1043, gnl|Hg17|chr2 (7105439-7105945)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	293-440, gnl\|bosTau2\|chr11 (70764352-70764502)
	293-440, gnl\|Hg17\|chr2 (7087643-7087790)
	293-440, gnl\|Mm7\|chr12 (24175273-24175126)

	544-1043, gnl\|bosTau2\|chr11 (70773449-70773964)
	544-1043, gnl\|Hg17\|chr2 (7105439-7105945)