Ss1.1-Ova1-OVR010019D05.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTGAAGCTCGCGGCTACTAATGCACTCCTGAACTCACTGGAGTTCACCAAAGCAAATTT TGACAAAGAGTCTGAAAGGCACTTTATTATGCAGGTGGTCTGTGAAGCCACACAGTGTCC AGATACAAGGGTACGAGTGGCTGCCTTACAGAATCTGGTGAAGATAATGTCCTTGTATTA TCAGTACATGGAAACATATATGGGTCCTGCTCTTTTCGCAATCACAATTGAAGCAATGAA AAGTGACATCGATGAAGTGGCCCTACAAGGGATAGAATTCTGGTCCAATGTCTGTGATGA GGAAATGGATTTGGCCATTGAAGCTTCGGAGGCAGCAGAACAAGGACGACCCCCTGAGCA CACCAGCAAGTTTTATGCCAAGGGAGCACTGCAGTACCTGGTTCCAATCCTCACACAGAC ACTAACTAAACAGGACGAAAACGATGATGACGATGACTGGAACCCCTGCAAAGCCGCAGG GGTGTGCCTCATGCTCCTGGCCACCTGCTGTGAGGATGACATTGTCCCTCACGTCCTCCC GTTCATCAAAGAACACATCAAGAACCCTGATTGGCGGTACCGGGATGCAGCAGTGATGGC TTTCGGCTCTATCTTGGAAGGACCAGAGCCCAATCAGCTCAAACCACTAGTTATACAGGC TATGCCCACCTTAATAGAATTAATGAAAGACCCCAGTGTAGTTGTTCGAGATACAACTGC ATGGACTGTGGGCAGAATCTGTGAACTGCTCCCTGAAGCTGCCATCAATGATGTCTACTT GACGCCCCTGCTGCAGTGTCTGATTGAGGGCCTCAGTGCAGAACCCAGAGTGGCTTCAAA TGTGTGCTGGGCTTTCTCCAGCCTGGCTGAAGCTGCTTATGAAGCTGCAGATGTAGCTGA TGATCAGGAAGAACCAGCTACATATTGCTTATCTTCTTCTTTTGAACTCATAGTGCAGAA ACTCTTGGAGACCACAGACAGACCGGATGGACACCAAAACAACCTGAGGAGTTCTGCATA TGAATCTCTAATGGAAATGGTGAAAAACAGTGCCAAGGATTGTTACCCTGCAGTTCAAAA GACAACTCTGGTCATTATGGAACGACTACAGCAGGTGCTCCAGATGGAGTCACATATCCA GAGCACATCGGATAGGATTCAGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTGAAGCTCGCGGCTACTAATGCACTCCTGAACTCACTGGAGTTCACCAAAGCAAATTT TGACAAAGAGTCTGAAAGGCACTTTATTATGCAGGTGGTCTGTGAAGCCACACAGTGTCC AGATACAAGGGTACGAGTGGCTGCCTTACAGAATCTGGTGAAGATAATGTCCTTGTATTA TCAGTACATGGAAACATATATGGGTCCTGCTCTTTTCGCAATCACAATTGAAGCAATGAA AAGTGACATCGATGAAGTGGCCCTACAAGGGATAGAATTCTGGTCCAATGTCTGTGATGA GGAAATGGATTTGGCCATTGAAGCTTCGGAGGCAGCAGAACAAGGACGACCCCCTGAGCA CACCAGCAAGTTTTATGCCAAGGGAGCACTGCAGTACCTGGTTCCAATCCTCACACAGAC ACTAACTAAACAGGACGAAAACGATGATGACGATGACTGGAACCCCTGCAAAGCCGCAGG GGTGTGCCTCATGCTCCTGGCCACCTGCTGTGAGGATGACATTGTCCCTCACGTCCTCCC GTTCATCAAAGAACACATCAAGAACCCTGATTGGCGGTACCGGGATGCAGCAGTGATGGC TTTCGGCTCTATCTTGGAAGGACCAGAGCCCAATCAGCTCAAACCACTAGTTATACAGGC TATGCCCACCTTAATAGAATTAATGAAAGACCCCAGTGTAGTTGTTCGAGATACAACTGC ATGGACTGTGGGCAGAATCTGTGAACTGCTCCCTGAAGCTGCCATCAATGATGTCTACTT GACGCCCCTGCTGCAGTGTCTGATTGAGGGCCTCAGTGCAGAACCCAGAGTGGCTTCAAA TGTGTGCTGGGCTTTCTCCAGCCTGGCTGAAGCTGCTTATGAAGCTGCAGATGTAGCTGA TGATCAGGAAGAACCAGCTACATATTGCTTATCTTCTTCTTTTGAACTCATAGTGCAGAA ACTCTTGGAGACCACAGACAGACCGGATGGACACCAAAACAACCTGAGGAGTTCTGCATA TGAATCTCTAATGGAAATGGTGAAAAACAGTGCCAAGGATTGTTACCCTGCAGTTCAAAA GACAACTCTGGTCATTATGGAACGACTACAGCAGGTGCTCCAGATGGAGTCACATATCCA GAGCACATCGGATAGGATTCAGTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 221-332, + strand, RNAz p=0.848857 | |
| 431-549, + strand, RNAz p=0.552032 | |
| 980-1098, + strand, RNAz p=0.643343 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 221-332, + strand, RNAz p=0.848857 | |
| 431-549, + strand, RNAz p=0.552032 | |
| 980-1098, + strand, RNAz p=0.643343 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 221-332, gnl|bosTau2|chr19 (32593626-32593515) | |
| 221-332, gnl|canFam2|chr9 (27340353-27340500) | |
| 221-332, gnl|danRer3|chrNA (4533039-4533172) | |
| 221-332, gnl|dasNov1|scaffold_3314 (33828-33685) | |
| 221-332, gnl|echTel1|scaffold_209142 (1585-1449) | |
| 221-332, gnl|fr1|chrUn (283353284-283353413) | |
| 221-332, gnl|galGal2|chrUn (24726217-24726082) | |
| 221-332, gnl|hg17|chr17 (43096509-43096640) | |
| 221-332, gnl|Hg17|chr17 (43096524-43096635) | |
| 221-332, gnl|loxAfr1|scaffold_14141 (77341-77477) | |
| 221-332, gnl|mm7|chr11 (97286414-97286281) | |
| 221-332, gnl|Mm7|chr11 (97286395-97286284) | |
| 221-332, gnl|monDom2|scaffold_18 (46928296-46928165) | |
| 221-332, gnl|oryCun1|scaffold_203011 (51743-51593) | |
| 221-332, gnl|panTro1|chr19_random (41967895-41968026) | |
| 221-332, gnl|rheMac2|chr16 (31873128-31873259) | |
| 221-332, gnl|rn3|chr10 (85914552-85914418) | |
| 221-332, gnl|tetNig1|chrUn_random (46151403-46151538) | |
| 221-332, gnl|xenTro1|scaffold_334 (707697-707559) | |
| 431-659, gnl|bosTau2|chr19 (32590895-32590667) | |
| 431-659, gnl|Hg17|chr17 (43100548-43100776) | |
| 431-659, gnl|Mm7|chr11 (97282319-97282091) | |
| 980-1129, gnl|bosTau2|chr19 (32588142-32587993) | |
| 980-1129, gnl|canFam2|chr9 (27346953-27347149) | |
| 980-1129, gnl|danRer3|chrNA (4535034-4535250) | |
| 980-1129, gnl|dasNov1|scaffold_3314 (27156-26941) | |
| 980-1129, gnl|fr1|chrUn (283354736-283354897) | |
| 980-1129, gnl|galGal2|chrUn (24719220-24719005) | |
| 980-1129, gnl|hg17|chr17 (43105365-43105579) | |
| 980-1129, gnl|Hg17|chr17 (43105381-43105530) | |
| 980-1129, gnl|loxAfr1|scaffold_5605 (64104-64316) | |
| 980-1129, gnl|mm7|chr11 (97278355-97278175) | |
| 980-1129, gnl|Mm7|chr11 (97278336-97278187) | |
| 980-1129, gnl|monDom2|scaffold_18 (46921322-46921128) | |
| 980-1129, gnl|oryCun1|scaffold_203011 (40771-40565) | |
| 980-1129, gnl|panTro1|chr19_random (41976725-41976939) | |
| 980-1129, gnl|rheMac2|chr16 (31881956-31882170) | |
| 980-1129, gnl|rn3|chr10 (85905731-85905521) | |
| 980-1129, gnl|tetNig1|chrUn_random (46152528-46152685) | |
| 980-1129, gnl|xenTro1|scaffold_334 (704793-704609) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 221-332, gnl|bosTau2|chr19 (32593626-32593515) | |
| 221-332, gnl|canFam2|chr9 (27340353-27340500) | |
| 221-332, gnl|danRer3|chrNA (4533039-4533172) | |
| 221-332, gnl|dasNov1|scaffold_3314 (33828-33685) | |
| 221-332, gnl|echTel1|scaffold_209142 (1585-1449) | |
| 221-332, gnl|fr1|chrUn (283353284-283353413) | |
| 221-332, gnl|galGal2|chrUn (24726217-24726082) | |
| 221-332, gnl|hg17|chr17 (43096509-43096640) | |
| 221-332, gnl|Hg17|chr17 (43096524-43096635) | |
| 221-332, gnl|loxAfr1|scaffold_14141 (77341-77477) | |
| 221-332, gnl|mm7|chr11 (97286414-97286281) | |
| 221-332, gnl|Mm7|chr11 (97286395-97286284) | |
| 221-332, gnl|monDom2|scaffold_18 (46928296-46928165) | |
| 221-332, gnl|oryCun1|scaffold_203011 (51743-51593) | |
| 221-332, gnl|panTro1|chr19_random (41967895-41968026) | |
| 221-332, gnl|rheMac2|chr16 (31873128-31873259) | |
| 221-332, gnl|rn3|chr10 (85914552-85914418) | |
| 221-332, gnl|tetNig1|chrUn_random (46151403-46151538) | |
| 221-332, gnl|xenTro1|scaffold_334 (707697-707559) | |
| 431-659, gnl|bosTau2|chr19 (32590895-32590667) | |
| 431-659, gnl|Hg17|chr17 (43100548-43100776) | |
| 431-659, gnl|Mm7|chr11 (97282319-97282091) | |
| 980-1129, gnl|bosTau2|chr19 (32588142-32587993) | |
| 980-1129, gnl|canFam2|chr9 (27346953-27347149) | |
| 980-1129, gnl|danRer3|chrNA (4535034-4535250) | |
| 980-1129, gnl|dasNov1|scaffold_3314 (27156-26941) | |
| 980-1129, gnl|fr1|chrUn (283354736-283354897) | |
| 980-1129, gnl|galGal2|chrUn (24719220-24719005) | |
| 980-1129, gnl|hg17|chr17 (43105365-43105579) | |
| 980-1129, gnl|Hg17|chr17 (43105381-43105530) | |
| 980-1129, gnl|loxAfr1|scaffold_5605 (64104-64316) | |
| 980-1129, gnl|mm7|chr11 (97278355-97278175) | |
| 980-1129, gnl|Mm7|chr11 (97278336-97278187) | |
| 980-1129, gnl|monDom2|scaffold_18 (46921322-46921128) | |
| 980-1129, gnl|oryCun1|scaffold_203011 (40771-40565) | |
| 980-1129, gnl|panTro1|chr19_random (41976725-41976939) | |
| 980-1129, gnl|rheMac2|chr16 (31881956-31882170) | |
| 980-1129, gnl|rn3|chr10 (85905731-85905521) | |
| 980-1129, gnl|tetNig1|chrUn_random (46152528-46152685) | |
| 980-1129, gnl|xenTro1|scaffold_334 (704793-704609) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| elu (0.385356) | |
| hyp (0.142837) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| hyp (0.142837) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) |