Ss1.1-Ova1-OVR010019E04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTGCTTCTGTCTGTACTGTTAGTATGGCGTCCGCGAGAAAGCGGAGAGGCGGCGGGAAC TCGGGTCGGGTTCTCGCTCTGTGCTGACAGCAACCTCGCTCTGTACTGACAGCAACCCAG GGCCGAGTGGGCTATGGGGGAGCCCGGCTCCCTGGTCACGGGAGGCCGCGCCGGTGACCG GAGCTGGTGCTTGCGGCGGGTGGGGATGAACGCCGAGTGGCTGCTGCTGGAGGACGGAAA AGAGGTGACTGTAGGTCGAGGATTTGGTGTCACATACCAGTTGGTTTCAAAAATTTGCCC TCTGATGATTTCCCGAAACCACTGTGTCTTGAAGCAGAATGCCGAGGGCCAGTGGACAAT TACGGACAACAAGAGTCTGAATGGTGTTTGGCTGAACAGAGAACGTCTAGAACCTTTAAA GGTCTATTCTATCCATGAGGGAGACCACATCCAGCTTGGGGTGCCTCTGGAAAATAAGGA GAATGCGGAGTATGAATATGAAGTTACCGAAGACGACTGGGAGAGGGTTTATCCTTGTCT GTCCCTAAAGAGTGACCAAATGATGGAAAAGAATAAGGGCTTGAGAACTAAAAGGAAGTT TAATTTGGATGAGTTAGAGGGTTCTGGAGCTGAAGGCCCCTCAACTTTGAAATCCAAAAT AAGTAAAGTGTCTTGTGAACCTGGTCAACCAGTGAAGTCACATGAGAAAGGTAAAGTGGC TGGTCAGCTCAATGAATATTTGGATCCTAAGTTGACTTGTCTTCAGCCAAGTGGGAAGGC CCTGGGGGCTCATGTTTACCCAGTCCCTGCAAAAGTCGTAGAGCTTCAGCACAGGAAGCA GAAAGCCTCAAACCCTTCAGCATCTCAGAGCAGCTTAGAGCTGTTTAAGGTCACCATGTC CAGGATTCTAAAGCTGAAAACACAGATGCAGGAAAAACAGATCGCTGTTCTGAATGTGAA AAAACAAACCCAAAAGGGAAACTCAAAGAAAATTGTGAAAATGGAGCAGGAACTGCACGA TTTACAGTCCCAGCTGTGTGCAGAGCAGGCCCAGCAGCAGGCCAGAGTGGAGCAGCTGGA GAAGACTTTCCAGGAAGAGCAGCAGCACCTGCAGGGTTTGGAGAAAGAGCAAGGAGAAGA GGACCTGAAGCAACAGCTGGCCCAGGCCCTGCAGGAGCATCGGGCTCTGATGGAAGAGCT AAACCGCAGCAGGAAGGACTTTGAAGCAATCATTCAAGCCAAGAACAAAGAGCTGGAGCA GACCAAGGAAGAGAAGGAGAAGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTGCTTCTGTCTGTACTGTTAGTATGGCGTCCGCGAGAAAGCGGAGAGGCGGCGGGAAC TCGGGTCGGGTTCTCGCTCTGTGCTGACAGCAACCTCGCTCTGTACTGACAGCAACCCAG GGCCGAGTGGGCTATGGGGGAGCCCGGCTCCCTGGTCACGGGAGGCCGCGCCGGTGACCG GAGCTGGTGCTTGCGGCGGGTGGGGATGAACGCCGAGTGGCTGCTGCTGGAGGACGGAAA AGAGGTGACTGTAGGTCGAGGATTTGGTGTCACATACCAGTTGGTTTCAAAAATTTGCCC TCTGATGATTTCCCGAAACCACTGTGTCTTGAAGCAGAATGCCGAGGGCCAGTGGACAAT TACGGACAACAAGAGTCTGAATGGTGTTTGGCTGAACAGAGAACGTCTAGAACCTTTAAA GGTCTATTCTATCCATGAGGGAGACCACATCCAGCTTGGGGTGCCTCTGGAAAATAAGGA GAATGCGGAGTATGAATATGAAGTTACCGAAGACGACTGGGAGAGGGTTTATCCTTGTCT GTCCCTAAAGAGTGACCAAATGATGGAAAAGAATAAGGGCTTGAGAACTAAAAGGAAGTT TAATTTGGATGAGTTAGAGGGTTCTGGAGCTGAAGGCCCCTCAACTTTGAAATCCAAAAT AAGTAAAGTGTCTTGTGAACCTGGTCAACCAGTGAAGTCACATGAGAAAGGTAAAGTGGC TGGTCAGCTCAATGAATATTTGGATCCTAAGTTGACTTGTCTTCAGCCAAGTGGGAAGGC CCTGGGGGCTCATGTTTACCCAGTCCCTGCAAAAGTCGTAGAGCTTCAGCACAGGAAGCA GAAAGCCTCAAACCCTTCAGCATCTCAGAGCAGCTTAGAGCTGTTTAAGGTCACCATGTC CAGGATTCTAAAGCTGAAAACACAGATGCAGGAAAAACAGATCGCTGTTCTGAATGTGAA AAAACAAACCCAAAAGGGAAACTCAAAGAAAATTGTGAAAATGGAGCAGGAACTGCACGA TTTACAGTCCCAGCTGTGTGCAGAGCAGGCCCAGCAGCAGGCCAGAGTGGAGCAGCTGGA GAAGACTTTCCAGGAAGAGCAGCAGCACCTGCAGGGTTTGGAGAAAGAGCAAGGAGAAGA GGACCTGAAGCAACAGCTGGCCCAGGCCCTGCAGGAGCATCGGGCTCTGATGGAAGAGCT AAACCGCAGCAGGAAGGACTTTGAAGCAATCATTCAAGCCAAGAACAAAGAGCTGGAGCA GACCAAGGAAGAGAAGGAGAAGGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 848-967, - strand, RNAz p=0.695255 | |
| 996-1115, + strand, RNAz p=0.662514 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 848-967, - strand, RNAz p=0.695255 | |
| 996-1115, + strand, RNAz p=0.662514 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 95-248, gnl|bosTau2|chr5 (25192499-25192652) | |
| 95-248, gnl|canFam2|chr12 (9380854-9381232) | |
| 95-248, gnl|dasNov1|scaffold_52311 (11135-10761) | |
| 95-248, gnl|echTel1|scaffold_322334 (106-459) | |
| 95-248, gnl|galGal2|chr3 (26522573-26522143) | |
| 95-248, gnl|hg17|chr6 (37429762-37430150) | |
| 95-248, gnl|Hg17|chr6 (37429881-37430033) | |
| 95-248, gnl|loxAfr1|scaffold_20655 (42722-43093) | |
| 95-248, gnl|mm7|chr17 (27807224-27807548) | |
| 95-248, gnl|Mm7|chr17 (27807336-27807490) | |
| 95-248, gnl|oryCun1|scaffold_173656 (13728-13370) | |
| 95-248, gnl|rheMac2|chr4 (37129530-37129917) | |
| 95-248, gnl|rn3|chr20 (7929962-7930269) | |
| 95-248, gnl|xenTro1|scaffold_2398 (35793-35453) | |
| 372-1115, gnl|bosTau2|chr5 (25212762-25213505) | |
| 372-1115, gnl|Hg17|chr6 (37444236-37444973) | |
| 372-1115, gnl|Mm7|chr17 (27818884-27819630) | |
| 1176-1284, gnl|bosTau2|chr5 (25218777-25218887) | |
| 1176-1284, gnl|canFam2|chr12 (9404162-9404283) | |
| 1176-1284, gnl|danRer3|chr11 (12942804-12942920) | |
| 1176-1284, gnl|dasNov1|scaffold_51397 (3160-3039) | |
| 1176-1284, gnl|echTel1|scaffold_322334 (40698-40819) | |
| 1176-1284, gnl|fr1|chrUn (100579700-100579591) | |
| 1176-1284, gnl|galGal2|chr3 (26515797-26515684) | |
| 1176-1284, gnl|hg17|chr6 (37450356-37450477) | |
| 1176-1284, gnl|Hg17|chr6 (37450372-37450485) | |
| 1176-1284, gnl|mm7|chr17 (27824035-27824154) | |
| 1176-1284, gnl|Mm7|chr17 (27824049-27824155) | |
| 1176-1284, gnl|monDom2|scaffold_42 (8811268-8811146) | |
| 1176-1284, gnl|oryCun1|scaffold_175513 (38069-37948) | |
| 1176-1284, gnl|panTro1|chr5 (37937071-37937192) | |
| 1176-1284, gnl|rheMac2|chr4 (37150970-37151091) | |
| 1176-1284, gnl|rn3|chr20 (7945931-7946050) | |
| 1176-1284, gnl|xenTro1|scaffold_1241 (39160-39051) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 95-248, gnl|bosTau2|chr5 (25192499-25192652) | |
| 95-248, gnl|canFam2|chr12 (9380854-9381232) | |
| 95-248, gnl|dasNov1|scaffold_52311 (11135-10761) | |
| 95-248, gnl|echTel1|scaffold_322334 (106-459) | |
| 95-248, gnl|galGal2|chr3 (26522573-26522143) | |
| 95-248, gnl|hg17|chr6 (37429762-37430150) | |
| 95-248, gnl|Hg17|chr6 (37429881-37430033) | |
| 95-248, gnl|loxAfr1|scaffold_20655 (42722-43093) | |
| 95-248, gnl|mm7|chr17 (27807224-27807548) | |
| 95-248, gnl|Mm7|chr17 (27807336-27807490) | |
| 95-248, gnl|oryCun1|scaffold_173656 (13728-13370) | |
| 95-248, gnl|rheMac2|chr4 (37129530-37129917) | |
| 95-248, gnl|rn3|chr20 (7929962-7930269) | |
| 95-248, gnl|xenTro1|scaffold_2398 (35793-35453) | |
| 372-1115, gnl|bosTau2|chr5 (25212762-25213505) | |
| 372-1115, gnl|Hg17|chr6 (37444236-37444973) | |
| 372-1115, gnl|Mm7|chr17 (27818884-27819630) | |
| 1176-1284, gnl|bosTau2|chr5 (25218777-25218887) | |
| 1176-1284, gnl|canFam2|chr12 (9404162-9404283) | |
| 1176-1284, gnl|danRer3|chr11 (12942804-12942920) | |
| 1176-1284, gnl|dasNov1|scaffold_51397 (3160-3039) | |
| 1176-1284, gnl|echTel1|scaffold_322334 (40698-40819) | |
| 1176-1284, gnl|fr1|chrUn (100579700-100579591) | |
| 1176-1284, gnl|galGal2|chr3 (26515797-26515684) | |
| 1176-1284, gnl|hg17|chr6 (37450356-37450477) | |
| 1176-1284, gnl|Hg17|chr6 (37450372-37450485) | |
| 1176-1284, gnl|mm7|chr17 (27824035-27824154) | |
| 1176-1284, gnl|Mm7|chr17 (27824049-27824155) | |
| 1176-1284, gnl|monDom2|scaffold_42 (8811268-8811146) | |
| 1176-1284, gnl|oryCun1|scaffold_175513 (38069-37948) | |
| 1176-1284, gnl|panTro1|chr5 (37937071-37937192) | |
| 1176-1284, gnl|rheMac2|chr4 (37150970-37151091) | |
| 1176-1284, gnl|rn3|chr20 (7945931-7946050) | |
| 1176-1284, gnl|xenTro1|scaffold_1241 (39160-39051) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| hyp (0.142837) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.142837) | |
| nmm (0.132802) | |
| eep (0.122564) | |
| jca (0.11396) | |
| cty (0.10408) |