Ss1.1-Ova1-OVR010019E08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGTGCATACACCGAGACCTGGCCGCCAGGAACGTCCTGGTGACGGAGGACAACGTGAT GAAGATCGCAGACTTTGGCCTTGCCCGGGACATCCACCACATTGACTACTACAAAAAGAC AACCAACGGCCGACTGCCGGTGAAGTGGATGGCACCGGAGGCTTTGTTTGACCGGATCTA CACCCACCAGAGTGACGTGTGGTCTTTTGGGGTGCTCCTGTGGGAAATCTTCACTCTGGG CGGCTCCCCATACCCTGGCGTCCCTGTGGAGGAGCTTTTCAAGCTGTTGAAGGAGGGTCA TCGGATGGACAAGCCCAGTAACTGCACCCATGAACTATACATGATGATGCGAGACTGTTG GCACGCGGTACCCTCCCAGAGACCTACCTTCAAGCAGCTGGTGGAAGACCTGGACCGCAT TGTGGCCTTGACCTCCAACCAGGAGTATCTGGACCTGTCGATGCCCCTGGACCAGTACTC CCCCAGCTTCCCTGACACCCGCAGCTCTACCTGCTCCTCTGGGGAAGATTCCGTCTTCTC TCACGAACCCTTGCCCGAGGAGCCCTGCCTGCCCCGACACCCACCCCAGCTTGCCAACGG CGGACTCAAACGGCGCTGACCGGCACCCTGGCACCCCTCCCCAAACTCCATCCTTAGCTG TGACCCCTCCCCGCTCCTGCTGGACTCCGCCCCACCCCGCCCCTTCCTGCTGGCAGGAGC CAGCTGCCTACCTGGGGCCTTCACCCCCAGTTCCCCTCTCCACCTCCCCCTCCTCTCAGC CTGCTGGTGCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGTGCATACACCGAGACCTGGCCGCCAGGAACGTCCTGGTGACGGAGGACAACGTGAT GAAGATCGCAGACTTTGGCCTTGCCCGGGACATCCACCACATTGACTACTACAAAAAGAC AACCAACGGCCGACTGCCGGTGAAGTGGATGGCACCGGAGGCTTTGTTTGACCGGATCTA CACCCACCAGAGTGACGTGTGGTCTTTTGGGGTGCTCCTGTGGGAAATCTTCACTCTGGG CGGCTCCCCATACCCTGGCGTCCCTGTGGAGGAGCTTTTCAAGCTGTTGAAGGAGGGTCA TCGGATGGACAAGCCCAGTAACTGCACCCATGAACTATACATGATGATGCGAGACTGTTG GCACGCGGTACCCTCCCAGAGACCTACCTTCAAGCAGCTGGTGGAAGACCTGGACCGCAT TGTGGCCTTGACCTCCAACCAGGAGTATCTGGACCTGTCGATGCCCCTGGACCAGTACTC CCCCAGCTTCCCTGACACCCGCAGCTCTACCTGCTCCTCTGGGGAAGATTCCGTCTTCTC TCACGAACCCTTGCCCGAGGAGCCCTGCCTGCCCCGACACCCACCCCAGCTTGCCAACGG CGGACTCAAACGGCGCTGACCGGCACCCTGGCACCCCTCCCCAAACTCCATCCTTAGCTG TGACCCCTCCCCGCTCCTGCTGGACTCCGCCCCACCCCGCCCCTTCCTGCTGGCAGGAGC CAGCTGCCTACCTGGGGCCTTCACCCCCAGTTCCCCTCTCCACCTCCCCCTCCTCTCAGC CTGCTGGTGCAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 634-770, - strand, RNAz p=0.998805 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 634-770, - strand, RNAz p=0.998805 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 2-424, gnl|bosTau2|chr8 (54292175-54292598) | |
| 2-424, gnl|Hg17|chr9 (110642371-110642794) | |
| 2-424, gnl|Mm7|chr4 (58414650-58415073) | |
| 3-143, gnl|bosTau2|chr26 (28950205-28950344) | |
| 3-143, gnl|Hg17|chr10 (123237619-123237480) | |
| 3-143, gnl|Mm7|chr7 (126288021-126287882) | |
| 200-339, gnl|bosTau2|chr26 (28952241-28952380) | |
| 200-339, gnl|canFam2|chr28 (34310170-34310327) | |
| 200-339, gnl|danRer3|chrUn (61998856-61999005) | |
| 200-339, gnl|dasNov1|scaffold_1994 (16035-15889) | |
| 200-339, gnl|echTel1|scaffold_260345 (522-628) | |
| 200-339, gnl|fr1|chrUn (60553921-60553775) | |
| 200-339, gnl|galGal2|chr6 (29907385-29907539) | |
| 200-339, gnl|hg17|chr10 (123234884-123235041) | |
| 200-339, gnl|Hg17|chr10 (123235035-123234896) | |
| 200-339, gnl|loxAfr1|scaffold_1219 (113753-113598) | |
| 200-339, gnl|mm7|chr7 (126284804-126284961) | |
| 200-339, gnl|Mm7|chr7 (126284955-126284816) | |
| 200-339, gnl|monDom2|scaffold_14 (38047697-38047540) | |
| 200-339, gnl|oryCun1|scaffold_214766 (197565-197411) | |
| 200-339, gnl|panTro1|chr8 (125560013-125560170) | |
| 200-339, gnl|rheMac2|chr9 (121106149-121106306) | |
| 200-339, gnl|rn3|chr1 (189640196-189640353) | |
| 200-339, gnl|tetNig1|chr17 (1349434-1349594) | |
| 200-339, gnl|xenTro1|scaffold_677 (490502-490353) | |
| 440-770, gnl|bosTau2|chr27 (21776775-21776453) | |
| 440-770, gnl|Hg17|chr8 (38390482-38390118) | |
| 440-770, gnl|Mm7|chr8 (24330216-24330584) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-424, gnl|bosTau2|chr8 (54292175-54292598) | |
| 2-424, gnl|Hg17|chr9 (110642371-110642794) | |
| 2-424, gnl|Mm7|chr4 (58414650-58415073) | |
| 3-143, gnl|bosTau2|chr26 (28950205-28950344) | |
| 3-143, gnl|Hg17|chr10 (123237619-123237480) | |
| 3-143, gnl|Mm7|chr7 (126288021-126287882) | |
| 200-339, gnl|bosTau2|chr26 (28952241-28952380) | |
| 200-339, gnl|canFam2|chr28 (34310170-34310327) | |
| 200-339, gnl|danRer3|chrUn (61998856-61999005) | |
| 200-339, gnl|dasNov1|scaffold_1994 (16035-15889) | |
| 200-339, gnl|echTel1|scaffold_260345 (522-628) | |
| 200-339, gnl|fr1|chrUn (60553921-60553775) | |
| 200-339, gnl|galGal2|chr6 (29907385-29907539) | |
| 200-339, gnl|hg17|chr10 (123234884-123235041) | |
| 200-339, gnl|Hg17|chr10 (123235035-123234896) | |
| 200-339, gnl|loxAfr1|scaffold_1219 (113753-113598) | |
| 200-339, gnl|mm7|chr7 (126284804-126284961) | |
| 200-339, gnl|Mm7|chr7 (126284955-126284816) | |
| 200-339, gnl|monDom2|scaffold_14 (38047697-38047540) | |
| 200-339, gnl|oryCun1|scaffold_214766 (197565-197411) | |
| 200-339, gnl|panTro1|chr8 (125560013-125560170) | |
| 200-339, gnl|rheMac2|chr9 (121106149-121106306) | |
| 200-339, gnl|rn3|chr1 (189640196-189640353) | |
| 200-339, gnl|tetNig1|chr17 (1349434-1349594) | |
| 200-339, gnl|xenTro1|scaffold_677 (490502-490353) | |
| 440-770, gnl|bosTau2|chr27 (21776775-21776453) | |
| 440-770, gnl|Hg17|chr8 (38390482-38390118) | |
| 440-770, gnl|Mm7|chr8 (24330216-24330584) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| hyp (0.142837) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ebs (0.118301) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.142837) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ebs (0.118301) |