Non-Coding RNA Search

Ss1.1-Ova1-OVR010019F11.5

Sequence:


               
               CCGCGTCGGAGGGGACCTGAGGCTGGAGAGGACCCCGCCGAGGGCAGAGCCGGGAGAGGA
GGGAGGACAGGGGTCTGGGCAGAGCGCGGCGGCGAGAGCCATCCAGGTCGCTGATTGCTC
TTGGGTGCTGGCGAACGCCACGGTTCTGAAAAAGCCTGAGGGCCGGAAGGCAGGCCTGGG
AGAAGCCCTTTCTGTGGGCAGTCGGAACCTTCAGGACCAGAGGAGAAGCCAGCCCCTCAC
CTGGACTTATGACCCGTGGCTTTGCCCCCAGCCTGCCCGTCGAGTTCCCCAAGATGGGCT
CCTTCCGCAGGCCCAGACCACGCTTCATGAGCTCCCCAGCGCTCAGCGACCTGCCCCGCT
TCCAGGCAGCCCGCCAGGCTCTGCAGCTGAGCTCCAACTCAGCTTGGAACAGCGTCCAGA
CAGCTGTGATCAACGTCTTCAAAGGGGGCGGCTTGCAGAGCAACGAGCTTTACGCACTGA
ACGAAAACATCAGGCGGCTGCTGAAGAGTGAACTTGGATCATTCATTACAGACTATTTCC
AGAACCAGCTTCTAGCAAAAGGACTGCTGTTTGTGGAGGAGAAGATTAAGCTGTGCGAAG
GTGCAAATCGCATTGAGGTTCTGGCTGAAGTCTGGGACCACTTCTTCACTGAGACCCTCC
CCACCCTGCAGGCCATATTCTACCCAGTTCAGGGCCAGGAGCTGACCATCCGCCAGATCT
CCCTGCTGGGCTTCCGTGACCTGGTCCTGCTGAAGGTGAAGCTGGACGACTTGCTGCTGC
TGGCCCAGCCCCAGCCACCCTTGTCCATCATCCAGATGTTGCTCATCCTGCAGAGTGTCC
ACGAGCCTACAGGCCCCACGGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCGTCGGAGGGGACCTGAGGCTGGAGAGGACCCCGCCGAGGGCAGAGCCGGGAGAGGA
GGGAGGACAGGGGTCTGGGCAGAGCGCGGCGGCGAGAGCCATCCAGGTCGCTGATTGCTC
TTGGGTGCTGGCGAACGCCACGGTTCTGAAAAAGCCTGAGGGCCGGAAGGCAGGCCTGGG
AGAAGCCCTTTCTGTGGGCAGTCGGAACCTTCAGGACCAGAGGAGAAGCCAGCCCCTCAC
CTGGACTTATGACCCGTGGCTTTGCCCCCAGCCTGCCCGTCGAGTTCCCCAAGATGGGCT
CCTTCCGCAGGCCCAGACCACGCTTCATGAGCTCCCCAGCGCTCAGCGACCTGCCCCGCT
TCCAGGCAGCCCGCCAGGCTCTGCAGCTGAGCTCCAACTCAGCTTGGAACAGCGTCCAGA
CAGCTGTGATCAACGTCTTCAAAGGGGGCGGCTTGCAGAGCAACGAGCTTTACGCACTGA
ACGAAAACATCAGGCGGCTGCTGAAGAGTGAACTTGGATCATTCATTACAGACTATTTCC
AGAACCAGCTTCTAGCAAAAGGACTGCTGTTTGTGGAGGAGAAGATTAAGCTGTGCGAAG
GTGCAAATCGCATTGAGGTTCTGGCTGAAGTCTGGGACCACTTCTTCACTGAGACCCTCC
CCACCCTGCAGGCCATATTCTACCCAGTTCAGGGCCAGGAGCTGACCATCCGCCAGATCT
CCCTGCTGGGCTTCCGTGACCTGGTCCTGCTGAAGGTGAAGCTGGACGACTTGCTGCTGC
TGGCCCAGCCCCAGCCACCCTTGTCCATCATCCAGATGTTGCTCATCCTGCAGAGTGTCC
ACGAGCCTACAGGCCCCACGGAGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|55635749|ref|XP_508373.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|55635749|ref|XP_508373.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               295-412, - strand, RNAz p=0.82325

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               295-412, - strand, RNAz p=0.82325

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               124-412, gnl|bosTau2|chr15 (40538579-40538292)
               

               
               124-412, gnl|Hg17|chr11 (36379122-36379411)
               

               
               124-412, gnl|Mm7|chr2 (101623125-101622846)
               


               
               690-833, gnl|bosTau2|chr15 (40496903-40496760)
               

               
               690-833, gnl|canFam2|chr18 (34741653-34741485)
               

               
               690-833, gnl|dasNov1|scaffold_630 (75797-75634)
               

               
               690-833, gnl|galGal2|chr5 (16544300-16544463)
               

               
               690-833, gnl|hg17|chr11 (36424419-36424582)
               

               
               690-833, gnl|Hg17|chr11 (36424422-36424566)
               

               
               690-833, gnl|loxAfr1|scaffold_897 (22276-22439)
               

               
               690-833, gnl|mm7|chr2 (101585471-101585309)
               

               
               690-833, gnl|Mm7|chr2 (101585464-101585321)
               

               
               690-833, gnl|monDom2|scaffold_33 (1590980-1591140)
               

               
               690-833, gnl|oryCun1|scaffold_172510 (44917-44747)
               

               
               690-833, gnl|panTro1|chr9 (36857826-36857989)
               

               
               690-833, gnl|rheMac2|chr14 (35377836-35377673)
               

               
               690-833, gnl|rn3|chr3 (86782046-86781885)
               

               
               690-833, gnl|tetNig1|chr13 (11137343-11137194)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               124-412, gnl|bosTau2|chr15 (40538579-40538292)
               

               
               124-412, gnl|Hg17|chr11 (36379122-36379411)
               

               
               124-412, gnl|Mm7|chr2 (101623125-101622846)
               


               
               690-833, gnl|bosTau2|chr15 (40496903-40496760)
               

               
               690-833, gnl|canFam2|chr18 (34741653-34741485)
               

               
               690-833, gnl|dasNov1|scaffold_630 (75797-75634)
               

               
               690-833, gnl|galGal2|chr5 (16544300-16544463)
               

               
               690-833, gnl|hg17|chr11 (36424419-36424582)
               

               
               690-833, gnl|Hg17|chr11 (36424422-36424566)
               

               
               690-833, gnl|loxAfr1|scaffold_897 (22276-22439)
               

               
               690-833, gnl|mm7|chr2 (101585471-101585309)
               

               
               690-833, gnl|Mm7|chr2 (101585464-101585321)
               

               
               690-833, gnl|monDom2|scaffold_33 (1590980-1591140)
               

               
               690-833, gnl|oryCun1|scaffold_172510 (44917-44747)
               

               
               690-833, gnl|panTro1|chr9 (36857826-36857989)
               

               
               690-833, gnl|rheMac2|chr14 (35377836-35377673)
               

               
               690-833, gnl|rn3|chr3 (86782046-86781885)
               

               
               690-833, gnl|tetNig1|chr13 (11137343-11137194)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               col (0.195008)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)

	124-412, gnl\|bosTau2\|chr15 (40538579-40538292)
	124-412, gnl\|Hg17\|chr11 (36379122-36379411)
	124-412, gnl\|Mm7\|chr2 (101623125-101622846)

	690-833, gnl\|bosTau2\|chr15 (40496903-40496760)
	690-833, gnl\|canFam2\|chr18 (34741653-34741485)
	690-833, gnl\|dasNov1\|scaffold_630 (75797-75634)
	690-833, gnl\|galGal2\|chr5 (16544300-16544463)
	690-833, gnl\|hg17\|chr11 (36424419-36424582)
	690-833, gnl\|Hg17\|chr11 (36424422-36424566)
	690-833, gnl\|loxAfr1\|scaffold_897 (22276-22439)
	690-833, gnl\|mm7\|chr2 (101585471-101585309)
	690-833, gnl\|Mm7\|chr2 (101585464-101585321)
	690-833, gnl\|monDom2\|scaffold_33 (1590980-1591140)
	690-833, gnl\|oryCun1\|scaffold_172510 (44917-44747)
	690-833, gnl\|panTro1\|chr9 (36857826-36857989)
	690-833, gnl\|rheMac2\|chr14 (35377836-35377673)
	690-833, gnl\|rn3\|chr3 (86782046-86781885)
	690-833, gnl\|tetNig1\|chr13 (11137343-11137194)