Ss1.1-Ova1-OVR010019G07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCCCCTCCTAACGCAACAGATCCCAGATGAGAGTGATTACAGTTTAGTGGCCAGCCTCG ACAACGTGAGGAATCTCTCCACTATCTTGAAGGCTATTCATTTCCGAGAACATGCCACCT GTTTCGCTACTAAAAATGGAATCAAGGTCACAGTGGAAAATGCAAAGTGTGTGCAAGCAA ATGCTTTTATTCAGGCTGGAATATTTCAAGAGTTTACAGTTCAAGAAGAGTCTGTTACTT TTCGAATTAATTTAACCGTCCTTTTAGACTGTTTATCTATTTTTGGATCAAGTCCTGTGC CAGGAACTTTAACTGCACTTCGGATGTGTTACCAAGGTTATGGCTACCCTTTGATGCTAT TTCTGGAAGAAGGAGGAGTGGTGACAGTCTGTAAAATCAATACTCAAGAGCCTGAGGAGA CTCTGGATTTTGACTTCTGCAGCACCAATGTTATTAATAAAATCATTCTGCAGTCAGAGG GGCTCCGTGAAGCATTTTCTGAATTGGATATGACGAGTGAGGTCCTACAGATCACCATGT CTCCCGATAAGCCTTATTTCAGGTTATCTACTTTTGGGAATGCGGGAAGCTCCCACCTTG ACTATCCCAAAGATTCTGATTTGATGGAATCATTTCACTGTAATCAGACTCAGGTCAACA GATACAAAATATCTTTATTGAAACCCTCTACAAAGGCGCTAGTCCTGTCTTGTAAGGTAT CTATTCGGACAGATAACCGAGGATTCCTCTCATTGCAGTATATGATTAGAAATGAAGATG GACAGATATGTTTTGTGGAATATTACTGCTGTCCCGACGAAGAAGTTCCTGAATCTGAGT CTTAAGTATGGCAGTTCACTGTGCCATTTATTTATGTACACATTCAGGGTAGGTCATGTT CTTGTTCTGAGTGTAATACTCATGATTTCTTACTGGATCGTCTACGGGGAAGAAGCATGG AAAAGACAGGAGTAAAGTCCCTGTCCCTTAATAACTGCTGTGTATTTGGTGATGTGTTCA CGTAATCACAGAATATCCAGTACCAGACTAGCTTGTGGCTCTGCCTTTTGAATTTTGGGG AATCATTATGAGTCAAGATGAACACATTTTATGTTTTACTTTTTAAAGTAGGATAGTCCA AGAGTCTAAAACTTTAAAGTTTGATAAAGCCATATCTGAAATGTTCTAGTGGCATATGGG CATCGCTTACTAATTGGAATTCTGAAGAACCCGTTTTAAAGCAGTGGTTCTCAAAGTGCC ACACCTAGGTCACCTGGAAACTTGTCAGCAACTCTGTGGGTGAGCCAGAAAAAAATCTGT AGTTTAAAAAGCTCCCCCACCCCCCAGGAGATTCTGATGCATGCTGAAGTTTTAGAACCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCCCCTCCTAACGCAACAGATCCCAGATGAGAGTGATTACAGTTTAGTGGCCAGCCTCG ACAACGTGAGGAATCTCTCCACTATCTTGAAGGCTATTCATTTCCGAGAACATGCCACCT GTTTCGCTACTAAAAATGGAATCAAGGTCACAGTGGAAAATGCAAAGTGTGTGCAAGCAA ATGCTTTTATTCAGGCTGGAATATTTCAAGAGTTTACAGTTCAAGAAGAGTCTGTTACTT TTCGAATTAATTTAACCGTCCTTTTAGACTGTTTATCTATTTTTGGATCAAGTCCTGTGC CAGGAACTTTAACTGCACTTCGGATGTGTTACCAAGGTTATGGCTACCCTTTGATGCTAT TTCTGGAAGAAGGAGGAGTGGTGACAGTCTGTAAAATCAATACTCAAGAGCCTGAGGAGA CTCTGGATTTTGACTTCTGCAGCACCAATGTTATTAATAAAATCATTCTGCAGTCAGAGG GGCTCCGTGAAGCATTTTCTGAATTGGATATGACGAGTGAGGTCCTACAGATCACCATGT CTCCCGATAAGCCTTATTTCAGGTTATCTACTTTTGGGAATGCGGGAAGCTCCCACCTTG ACTATCCCAAAGATTCTGATTTGATGGAATCATTTCACTGTAATCAGACTCAGGTCAACA GATACAAAATATCTTTATTGAAACCCTCTACAAAGGCGCTAGTCCTGTCTTGTAAGGTAT CTATTCGGACAGATAACCGAGGATTCCTCTCATTGCAGTATATGATTAGAAATGAAGATG GACAGATATGTTTTGTGGAATATTACTGCTGTCCCGACGAAGAAGTTCCTGAATCTGAGT CTTAAGTATGGCAGTTCACTGTGCCATTTATTTATGTACACATTCAGGGTAGGTCATGTT CTTGTTCTGAGTGTAATACTCATGATTTCTTACTGGATCGTCTACGGGGAAGAAGCATGG AAAAGACAGGAGTAAAGTCCCTGTCCCTTAATAACTGCTGTGTATTTGGTGATGTGTTCA CGTAATCACAGAATATCCAGTACCAGACTAGCTTGTGGCTCTGCCTTTTGAATTTTGGGG AATCATTATGAGTCAAGATGAACACATTTTATGTTTTACTTTTTAAAGTAGGATAGTCCA AGAGTCTAAAACTTTAAAGTTTGATAAAGCCATATCTGAAATGTTCTAGTGGCATATGGG CATCGCTTACTAATTGGAATTCTGAAGAACCCGTTTTAAAGCAGTGGTTCTCAAAGTGCC ACACCTAGGTCACCTGGAAACTTGTCAGCAACTCTGTGGGTGAGCCAGAAAAAAATCTGT AGTTTAAAAAGCTCCCCCACCCCCCAGGAGATTCTGATGCATGCTGAAGTTTTAGAACCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 73-192, - strand, RNAz p=0.815317 | |
| 340-459, - strand, RNAz p=0.71149 | |
| 406-525, + strand, RNAz p=0.796558 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 73-192, - strand, RNAz p=0.815317 | |
| 340-459, - strand, RNAz p=0.71149 | |
| 406-525, + strand, RNAz p=0.796558 |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 1-201, gnl|bosTau2|chr19 (28070313-28070514) | |
| 1-201, gnl|canFam2|chr4 (76582125-76582321) | |
| 1-201, gnl|canFam2|chr4 (76582344-76582125) | |
| 1-201, gnl|danRer3|chr16 (16501990-16501798) | |
| 1-201, gnl|danRer3|chr16 (16501770-16501990) | |
| 1-201, gnl|dasNov1|scaffold_7570 (50676-50876) | |
| 1-201, gnl|dasNov1|scaffold_7570 (50887-50676) | |
| 1-201, gnl|fr1|chrUn (112121777-112121586) | |
| 1-201, gnl|fr1|chrUn (112121572-112121778) | |
| 1-201, gnl|galGal2|chrZ_random (9733028-9732831) | |
| 1-201, gnl|galGal2|chrZ_random (9732823-9733028) | |
| 1-201, gnl|hg17|chr10 (121370566-121370766) | |
| 1-201, gnl|hg17|chr5 (34950534-34950760) | |
| 1-201, gnl|Hg17|chr5 (34950753-34950549) | |
| 1-201, gnl|mm7|chr15 (10548161-10548365) | |
| 1-201, gnl|mm7|chr15 (10548396-10548161) | |
| 1-201, gnl|Mm7|chr15 (10548166-10548374) | |
| 1-201, gnl|monDom2|scaffold_20 (37980645-37980842) | |
| 1-201, gnl|monDom2|scaffold_20 (37980858-37980645) | |
| 1-201, gnl|oryCun1|scaffold_116271 (6935-7135) | |
| 1-201, gnl|oryCun1|scaffold_116271 (7152-6935) | |
| 1-201, gnl|panTro1|chr4 (81880793-81880567) | |
| 1-201, gnl|panTro1|chr8 (123639674-123639874) | |
| 1-201, gnl|rheMac2|chr6 (34678780-34679006) | |
| 1-201, gnl|rheMac2|chr9 (119245097-119245297) | |
| 1-201, gnl|rn3|chr2 (59766688-59766892) | |
| 1-201, gnl|rn3|chr2 (59766922-59766688) | |
| 1-201, gnl|tetNig1|chr4 (3282043-3282237) | |
| 1-201, gnl|tetNig1|chr4 (3282244-3282043) | |
| 1-201, gnl|xenTro1|scaffold_625 (198315-198119) | |
| 1-201, gnl|xenTro1|scaffold_625 (198096-198311) | |
| 301-564, gnl|bosTau2|chr19 (28073166-28073429) | |
| 301-564, gnl|canFam2|chr4 (76585223-76585385) | |
| 301-564, gnl|danRer3|chr16 (16501606-16501370) | |
| 301-564, gnl|dasNov1|scaffold_7570 (54548-54710) | |
| 301-564, gnl|fr1|chrUn (112121377-112121122) | |
| 301-564, gnl|galGal2|chrZ_random (9729656-9729495) | |
| 301-564, gnl|hg17|chr10 (121370875-121371036) | |
| 301-564, gnl|Hg17|chr5 (34947677-34947414) | |
| 301-564, gnl|loxAfr1|scaffold_1238 (32569-32730) | |
| 301-564, gnl|mm7|chr15 (10551904-10552066) | |
| 301-564, gnl|Mm7|chr15 (10551903-10552166) | |
| 301-564, gnl|monDom2|scaffold_20 (37984481-37984641) | |
| 301-564, gnl|oryCun1|scaffold_116271 (9404-9565) | |
| 301-564, gnl|panTro1|chr8 (123639983-123640144) | |
| 301-564, gnl|rheMac2|chr9 (119245406-119245567) | |
| 301-564, gnl|rn3|chr2 (59770736-59770898) | |
| 301-564, gnl|tetNig1|chr4 (3282423-3282666) | |
| 301-564, gnl|xenTro1|scaffold_625 (196783-196621) | |
| 659-1187, gnl|bosTau2|chr19 (28076188-28076716) | |
| 659-1187, gnl|Hg17|chr5 (34944813-34943992) | |
| 1192-1380, gnl|bosTau2|chr19 (28076747-28076943) | |
| 1192-1380, gnl|Hg17|chr5 (34943961-34943770) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-201, gnl|bosTau2|chr19 (28070313-28070514) | |
| 1-201, gnl|canFam2|chr4 (76582125-76582321) | |
| 1-201, gnl|canFam2|chr4 (76582344-76582125) | |
| 1-201, gnl|danRer3|chr16 (16501990-16501798) | |
| 1-201, gnl|danRer3|chr16 (16501770-16501990) | |
| 1-201, gnl|dasNov1|scaffold_7570 (50676-50876) | |
| 1-201, gnl|dasNov1|scaffold_7570 (50887-50676) | |
| 1-201, gnl|fr1|chrUn (112121777-112121586) | |
| 1-201, gnl|fr1|chrUn (112121572-112121778) | |
| 1-201, gnl|galGal2|chrZ_random (9733028-9732831) | |
| 1-201, gnl|galGal2|chrZ_random (9732823-9733028) | |
| 1-201, gnl|hg17|chr10 (121370566-121370766) | |
| 1-201, gnl|hg17|chr5 (34950534-34950760) | |
| 1-201, gnl|Hg17|chr5 (34950753-34950549) | |
| 1-201, gnl|mm7|chr15 (10548161-10548365) | |
| 1-201, gnl|mm7|chr15 (10548396-10548161) | |
| 1-201, gnl|Mm7|chr15 (10548166-10548374) | |
| 1-201, gnl|monDom2|scaffold_20 (37980645-37980842) | |
| 1-201, gnl|monDom2|scaffold_20 (37980858-37980645) | |
| 1-201, gnl|oryCun1|scaffold_116271 (6935-7135) | |
| 1-201, gnl|oryCun1|scaffold_116271 (7152-6935) | |
| 1-201, gnl|panTro1|chr4 (81880793-81880567) | |
| 1-201, gnl|panTro1|chr8 (123639674-123639874) | |
| 1-201, gnl|rheMac2|chr6 (34678780-34679006) | |
| 1-201, gnl|rheMac2|chr9 (119245097-119245297) | |
| 1-201, gnl|rn3|chr2 (59766688-59766892) | |
| 1-201, gnl|rn3|chr2 (59766922-59766688) | |
| 1-201, gnl|tetNig1|chr4 (3282043-3282237) | |
| 1-201, gnl|tetNig1|chr4 (3282244-3282043) | |
| 1-201, gnl|xenTro1|scaffold_625 (198315-198119) | |
| 1-201, gnl|xenTro1|scaffold_625 (198096-198311) | |
| 301-564, gnl|bosTau2|chr19 (28073166-28073429) | |
| 301-564, gnl|canFam2|chr4 (76585223-76585385) | |
| 301-564, gnl|danRer3|chr16 (16501606-16501370) | |
| 301-564, gnl|dasNov1|scaffold_7570 (54548-54710) | |
| 301-564, gnl|fr1|chrUn (112121377-112121122) | |
| 301-564, gnl|galGal2|chrZ_random (9729656-9729495) | |
| 301-564, gnl|hg17|chr10 (121370875-121371036) | |
| 301-564, gnl|Hg17|chr5 (34947677-34947414) | |
| 301-564, gnl|loxAfr1|scaffold_1238 (32569-32730) | |
| 301-564, gnl|mm7|chr15 (10551904-10552066) | |
| 301-564, gnl|Mm7|chr15 (10551903-10552166) | |
| 301-564, gnl|monDom2|scaffold_20 (37984481-37984641) | |
| 301-564, gnl|oryCun1|scaffold_116271 (9404-9565) | |
| 301-564, gnl|panTro1|chr8 (123639983-123640144) | |
| 301-564, gnl|rheMac2|chr9 (119245406-119245567) | |
| 301-564, gnl|rn3|chr2 (59770736-59770898) | |
| 301-564, gnl|tetNig1|chr4 (3282423-3282666) | |
| 301-564, gnl|xenTro1|scaffold_625 (196783-196621) | |
| 659-1187, gnl|bosTau2|chr19 (28076188-28076716) | |
| 659-1187, gnl|Hg17|chr5 (34944813-34943992) | |
| 1192-1380, gnl|bosTau2|chr19 (28076747-28076943) | |
| 1192-1380, gnl|Hg17|chr5 (34943961-34943770) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ova (0.258264) | |
| fcc (0.197785) | |
| cbl (0.114797) |