Ss1.1-Ova1-OVR010020A01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAATAGAGAGGGCGGGGCAGGCGGGGCATGGTTGCCCGAGAAGCCCATCTGTTGCGGTTC TTGGGGCGGGAAGGTTGCTGGATCACTATTCCTGCTTCCCACTAACTGGAGCTGTGCCTG GGACGGGATCCGAATCGCCTCGCTGGCATCTTCCAGGTTACTCTCTGAGACCTTGAACTT GGCCCCATCTGGCGATCCTCCGCGCCCTGCCGCGACCCTAGTGCCCGAGAACTGCCCGCG GGCTGCCCAGAGGGTCGTTGTCCCCACCGCCGCCACAGGACCCTTCAGCGCCAGCCTTCC CCACTCCCCTTCCCAGGCAGGGCCCCCAACGCCTCCAGCAGCCTCTCTTCCGCTGTCTGG TCCGCGGAGGTGATTGGTTACCATGGTGAAGCTGGCAGCGAAATGCATCCTGGCAGGAGA CCCAGCCGTGGGCAAAACCGCCCTGGCACAGATCTTCCGCAGCGACGGAGCCCAATTCCA GAAGAACTACACCCTGACAACAGGGGTGGATCTGGTGGTGAAGACAGTGCCAGTCCCGGA CACAGCAGACAGTGTGGAACTCTTCATTCTTGACTCGGCCGGCAAGGAGCTGTTTTCGGA AATGCTGGATAAATTGTGGGAGAGTCCCAGTGTCCTGTGTCTCGTCTACGATGTGACCAA TGAACAGTCCTTCACCAACTGCAGCAAGTGGCTGGAGAAGGCTCGGTCGCAGATTCCAGG GATCACCCTGCCAGGTGTGCTGGTGGGGAACAAGACAGACCTGGCCGGCAGGCGAGCGGT GGCGTCGGCTCAGGCCCGGGCGTGGGCGCTGAGCCAGGGCCTGGAATGTTTTGAAACATC CGTGAAGGAGATGATAAACTACGAAGCCCCCTTCCACTCTCTGGCCAAGCAGTTCCACCA CCTGTACCAGGAGAAGCTGGAGGTTTTCCAGGCTCTAGTGTGAGGGGCTGGCTGGACTGT TCCCCGAGACAGGCCAGCACTGTTGGGCACCTGGCCGTGGGCTCCGTCTCCTCTGAAGAT GGGAGAAGATGGCATTGCCCGGGTGCTTCCAATCTATGGTGACAACTTTAAATAAAATGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAATAGAGAGGGCGGGGCAGGCGGGGCATGGTTGCCCGAGAAGCCCATCTGTTGCGGTTC TTGGGGCGGGAAGGTTGCTGGATCACTATTCCTGCTTCCCACTAACTGGAGCTGTGCCTG GGACGGGATCCGAATCGCCTCGCTGGCATCTTCCAGGTTACTCTCTGAGACCTTGAACTT GGCCCCATCTGGCGATCCTCCGCGCCCTGCCGCGACCCTAGTGCCCGAGAACTGCCCGCG GGCTGCCCAGAGGGTCGTTGTCCCCACCGCCGCCACAGGACCCTTCAGCGCCAGCCTTCC CCACTCCCCTTCCCAGGCAGGGCCCCCAACGCCTCCAGCAGCCTCTCTTCCGCTGTCTGG TCCGCGGAGGTGATTGGTTACCATGGTGAAGCTGGCAGCGAAATGCATCCTGGCAGGAGA CCCAGCCGTGGGCAAAACCGCCCTGGCACAGATCTTCCGCAGCGACGGAGCCCAATTCCA GAAGAACTACACCCTGACAACAGGGGTGGATCTGGTGGTGAAGACAGTGCCAGTCCCGGA CACAGCAGACAGTGTGGAACTCTTCATTCTTGACTCGGCCGGCAAGGAGCTGTTTTCGGA AATGCTGGATAAATTGTGGGAGAGTCCCAGTGTCCTGTGTCTCGTCTACGATGTGACCAA TGAACAGTCCTTCACCAACTGCAGCAAGTGGCTGGAGAAGGCTCGGTCGCAGATTCCAGG GATCACCCTGCCAGGTGTGCTGGTGGGGAACAAGACAGACCTGGCCGGCAGGCGAGCGGT GGCGTCGGCTCAGGCCCGGGCGTGGGCGCTGAGCCAGGGCCTGGAATGTTTTGAAACATC CGTGAAGGAGATGATAAACTACGAAGCCCCCTTCCACTCTCTGGCCAAGCAGTTCCACCA CCTGTACCAGGAGAAGCTGGAGGTTTTCCAGGCTCTAGTGTGAGGGGCTGGCTGGACTGT TCCCCGAGACAGGCCAGCACTGTTGGGCACCTGGCCGTGGGCTCCGTCTCCTCTGAAGAT GGGAGAAGATGGCATTGCCCGGGTGCTTCCAATCTATGGTGACAACTTTAAATAAAATGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 616-734, - strand, RNAz p=0.576871 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 616-734, - strand, RNAz p=0.576871 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 260-420, gnl|bosTau2|chr5 (45264997-45265157) | |
| 260-420, gnl|canFam2|chr10 (30761540-30761174) | |
| 260-420, gnl|dasNov1|scaffold_94417 (2559-2928) | |
| 260-420, gnl|echTel1|scaffold_245851 (283-653) | |
| 260-420, gnl|hg17|chr22 (35496022-35496429) | |
| 260-420, gnl|Hg17|chr22 (35496399-35496214) | |
| 260-420, gnl|loxAfr1|scaffold_23912 (4968-4574) | |
| 260-420, gnl|mm7|chr15 (78256515-78256859) | |
| 260-420, gnl|Mm7|chr15 (78256853-78256717) | |
| 260-420, gnl|rheMac2|chr10 (80679414-80679805) | |
| 260-420, gnl|rn3|chr7 (116129854-116130183) | |
| 616-736, gnl|bosTau2|chr5 (45280105-45280225) | |
| 616-736, gnl|Hg17|chr22 (35484581-35484461) | |
| 616-736, gnl|Mm7|chr15 (78248217-78248097) | |
| 844-1080, gnl|bosTau2|chr5 (45288048-45288268) | |
| 844-1080, gnl|canFam2|chr10 (30779766-30779430) | |
| 844-1080, gnl|echTel1|scaffold_115347 (604-189) | |
| 844-1080, gnl|hg17|chr22 (35478475-35478888) | |
| 844-1080, gnl|Hg17|chr22 (35478954-35478764) | |
| 844-1080, gnl|loxAfr1|scaffold_23912 (24621-24118) | |
| 844-1080, gnl|mm7|chr15 (78242244-78242595) | |
| 844-1080, gnl|Mm7|chr15 (78242661-78242424) | |
| 844-1080, gnl|monDom2|scaffold_34 (1555135-1554753) | |
| 844-1080, gnl|oryCun1|scaffold_159228 (7591-7200) | |
| 844-1080, gnl|panTro1|chr23 (35644087-35644500) | |
| 844-1080, gnl|rheMac2|chr10 (80661726-80662141) | |
| 844-1080, gnl|rn3|chr7 (116114474-116114825) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 260-420, gnl|bosTau2|chr5 (45264997-45265157) | |
| 260-420, gnl|canFam2|chr10 (30761540-30761174) | |
| 260-420, gnl|dasNov1|scaffold_94417 (2559-2928) | |
| 260-420, gnl|echTel1|scaffold_245851 (283-653) | |
| 260-420, gnl|hg17|chr22 (35496022-35496429) | |
| 260-420, gnl|Hg17|chr22 (35496399-35496214) | |
| 260-420, gnl|loxAfr1|scaffold_23912 (4968-4574) | |
| 260-420, gnl|mm7|chr15 (78256515-78256859) | |
| 260-420, gnl|Mm7|chr15 (78256853-78256717) | |
| 260-420, gnl|rheMac2|chr10 (80679414-80679805) | |
| 260-420, gnl|rn3|chr7 (116129854-116130183) | |
| 616-736, gnl|bosTau2|chr5 (45280105-45280225) | |
| 616-736, gnl|Hg17|chr22 (35484581-35484461) | |
| 616-736, gnl|Mm7|chr15 (78248217-78248097) | |
| 844-1080, gnl|bosTau2|chr5 (45288048-45288268) | |
| 844-1080, gnl|canFam2|chr10 (30779766-30779430) | |
| 844-1080, gnl|echTel1|scaffold_115347 (604-189) | |
| 844-1080, gnl|hg17|chr22 (35478475-35478888) | |
| 844-1080, gnl|Hg17|chr22 (35478954-35478764) | |
| 844-1080, gnl|loxAfr1|scaffold_23912 (24621-24118) | |
| 844-1080, gnl|mm7|chr15 (78242244-78242595) | |
| 844-1080, gnl|Mm7|chr15 (78242661-78242424) | |
| 844-1080, gnl|monDom2|scaffold_34 (1555135-1554753) | |
| 844-1080, gnl|oryCun1|scaffold_159228 (7591-7200) | |
| 844-1080, gnl|panTro1|chr23 (35644087-35644500) | |
| 844-1080, gnl|rheMac2|chr10 (80661726-80662141) | |
| 844-1080, gnl|rn3|chr7 (116114474-116114825) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eru (0.120048) |