Ss1.1-Ova1-OVR010020A10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTTTTGCGCGCGAACTCTAAGCTCTAGGGTCCCGGGGCCAGGTTCGCGGTTGCTCGCGG GGCAGGCCCCTGAGGGACGAGACGGCGTCACTGGACCTGGACACCTTCATCACCCCATCA TGCAGACCTCAGCGCACAAGCAGCAGCAGCAGCCCGAGGCAACCAAGATCAGGAACCTGC CCTGGGTTGAAAAATACCGGCCACAGACACTGGATGATCTCATTTCTCATCAGGACATTC TGAGTACTATTCAGAAGTTTATCAGTGAGGACCGCCTTCCGCACCTCCTTCTCTATGGTC CTCCAGGCACGGGAAAGACATCCACCATCCTGGCCTGTGCTAAACAGCTGTACAAAGATA AGGAATTCGGCTCCATGGTCTTGGAGCTGAATGCTTCAGATGACCGAGGAATAGATATCG TTCGGGGACCAATCCTGAGCTTTGCTAGCACAAGGACAATATTTAAGAAGGGCTTTAAAC TAGTGATCTTGGATGAAGCTGATGCCATGACTCAGGATGCCCAGAACGCCTTGCGGAGAG TGATTGAAAAATTTACTGAAAATACCAGATTTTGCCTCATCTGCAACTATCTGTCAAAGA TCATTCCCGCCTTGCAGTCGCGGTGTACAAGGTTCCGATTCGGCCCCCTGACTCCTGAAC TCATGGTTCCCCGCCTGGAACATGTTGTAGAAGAAGAGAAAGTTGATATAAGCGAAGATG GGATGAAAGCGCTCATAACACTTTCCAGTGGAGATATGCGAAGGGCCCTGAATATTTTGC AGAGCACCAACATGGCCTTTGGGAAGGTGACAGAGGAGACCGTGTACACCTGCACAGGGC ACCCACTCAAGTCAGACATCGCCAACATTCTAGACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTTTTGCGCGCGAACTCTAAGCTCTAGGGTCCCGGGGCCAGGTTCGCGGTTGCTCGCGG GGCAGGCCCCTGAGGGACGAGACGGCGTCACTGGACCTGGACACCTTCATCACCCCATCA TGCAGACCTCAGCGCACAAGCAGCAGCAGCAGCCCGAGGCAACCAAGATCAGGAACCTGC CCTGGGTTGAAAAATACCGGCCACAGACACTGGATGATCTCATTTCTCATCAGGACATTC TGAGTACTATTCAGAAGTTTATCAGTGAGGACCGCCTTCCGCACCTCCTTCTCTATGGTC CTCCAGGCACGGGAAAGACATCCACCATCCTGGCCTGTGCTAAACAGCTGTACAAAGATA AGGAATTCGGCTCCATGGTCTTGGAGCTGAATGCTTCAGATGACCGAGGAATAGATATCG TTCGGGGACCAATCCTGAGCTTTGCTAGCACAAGGACAATATTTAAGAAGGGCTTTAAAC TAGTGATCTTGGATGAAGCTGATGCCATGACTCAGGATGCCCAGAACGCCTTGCGGAGAG TGATTGAAAAATTTACTGAAAATACCAGATTTTGCCTCATCTGCAACTATCTGTCAAAGA TCATTCCCGCCTTGCAGTCGCGGTGTACAAGGTTCCGATTCGGCCCCCTGACTCCTGAAC TCATGGTTCCCCGCCTGGAACATGTTGTAGAAGAAGAGAAAGTTGATATAAGCGAAGATG GGATGAAAGCGCTCATAACACTTTCCAGTGGAGATATGCGAAGGGCCCTGAATATTTTGC AGAGCACCAACATGGCCTTTGGGAAGGTGACAGAGGAGACCGTGTACACCTGCACAGGGC ACCCACTCAAGTCAGACATCGCCAACATTCTAGACT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 4-185, gnl|bosTau2|chr17 (32244836-32244663) | |
| 4-185, gnl|Hg17|chr12 (116917238-116917418) | |
| 250-393, gnl|bosTau2|chr17 (32242772-32242629) | |
| 250-393, gnl|canFam2|chr1 (84583504-84583345) | |
| 250-393, gnl|canFam2|chr26 (17455569-17455723) | |
| 250-393, gnl|danRer3|chr5 (2900641-2900481) | |
| 250-393, gnl|danRer3|chr5 (2900620-2900478) | |
| 250-393, gnl|dasNov1|scaffold_22765 (14662-14822) | |
| 250-393, gnl|dasNov1|scaffold_44105 (43540-43408) | |
| 250-393, gnl|echTel1|scaffold_190687 (5321-5161) | |
| 250-393, gnl|echTel1|scaffold_190687 (5300-5167) | |
| 250-393, gnl|fr1|chrUn (222767329-222767474) | |
| 250-393, gnl|hg17|chr12 (116920137-116920297) | |
| 250-393, gnl|Hg17|chr12 (116920157-116920299) | |
| 250-393, gnl|hg17|chr9 (76916630-76916768) | |
| 250-393, gnl|loxAfr1|scaffold_16953 (30502-30662) | |
| 250-393, gnl|loxAfr1|scaffold_53802 (9352-9490) | |
| 250-393, gnl|mm7|chr4 (106704812-106704670) | |
| 250-393, gnl|mm7|chr5 (116616575-116616418) | |
| 250-393, gnl|Mm7|chr5 (116616556-116616413) | |
| 250-393, gnl|monDom2|scaffold_101 (2725421-2725258) | |
| 250-393, gnl|oryCun1|scaffold_161858 (23943-23805) | |
| 250-393, gnl|oryCun1|scaffold_161858 (23943-23802) | |
| 250-393, gnl|panTro1|chr10 (119907085-119907245) | |
| 250-393, gnl|panTro1|chr11 (60798487-60798625) | |
| 250-393, gnl|rheMac2|chr11 (118963827-118963987) | |
| 250-393, gnl|rheMac2|chr11 (118963848-118963981) | |
| 250-393, gnl|rn3|chr12 (40261728-40261888) | |
| 250-393, gnl|rn3|chr15 (19211246-19211111) | |
| 250-393, gnl|tetNig1|chr12 (4450700-4450541) | |
| 250-393, gnl|tetNig1|chr12 (4450679-4450546) | |
| 250-393, gnl|xenTro1|scaffold_2 (478337-478492) | |
| 539-700, gnl|bosTau2|chr17 (32239460-32239299) | |
| 539-700, gnl|canFam2|chr26 (17458774-17458957) | |
| 539-700, gnl|danRer3|chr5 (2895547-2895381) | |
| 539-700, gnl|dasNov1|scaffold_40143 (9725-9864) | |
| 539-700, gnl|echTel1|scaffold_190687 (714-527) | |
| 539-700, gnl|fr1|chrUn (222768073-222768239) | |
| 539-700, gnl|hg17|chr12 (116925354-116925541) | |
| 539-700, gnl|Hg17|chr12 (116925374-116925535) | |
| 539-700, gnl|loxAfr1|scaffold_16953 (33981-34168) | |
| 539-700, gnl|mm7|chr5 (116613273-116613089) | |
| 539-700, gnl|Mm7|chr5 (116613254-116613093) | |
| 539-700, gnl|monDom2|scaffold_101 (2721772-2721600) | |
| 539-700, gnl|oryCun1|scaffold_209149 (33533-33346) | |
| 539-700, gnl|rheMac2|chr11 (118969147-118969334) | |
| 539-700, gnl|rn3|chr12 (40264680-40264864) | |
| 539-700, gnl|tetNig1|chr12 (4449960-4449771) | |
| 539-700, gnl|xenTro1|scaffold_2 (486564-486751) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-185, gnl|bosTau2|chr17 (32244836-32244663) | |
| 4-185, gnl|Hg17|chr12 (116917238-116917418) | |
| 250-393, gnl|bosTau2|chr17 (32242772-32242629) | |
| 250-393, gnl|canFam2|chr1 (84583504-84583345) | |
| 250-393, gnl|canFam2|chr26 (17455569-17455723) | |
| 250-393, gnl|danRer3|chr5 (2900641-2900481) | |
| 250-393, gnl|danRer3|chr5 (2900620-2900478) | |
| 250-393, gnl|dasNov1|scaffold_22765 (14662-14822) | |
| 250-393, gnl|dasNov1|scaffold_44105 (43540-43408) | |
| 250-393, gnl|echTel1|scaffold_190687 (5321-5161) | |
| 250-393, gnl|echTel1|scaffold_190687 (5300-5167) | |
| 250-393, gnl|fr1|chrUn (222767329-222767474) | |
| 250-393, gnl|hg17|chr12 (116920137-116920297) | |
| 250-393, gnl|Hg17|chr12 (116920157-116920299) | |
| 250-393, gnl|hg17|chr9 (76916630-76916768) | |
| 250-393, gnl|loxAfr1|scaffold_16953 (30502-30662) | |
| 250-393, gnl|loxAfr1|scaffold_53802 (9352-9490) | |
| 250-393, gnl|mm7|chr4 (106704812-106704670) | |
| 250-393, gnl|mm7|chr5 (116616575-116616418) | |
| 250-393, gnl|Mm7|chr5 (116616556-116616413) | |
| 250-393, gnl|monDom2|scaffold_101 (2725421-2725258) | |
| 250-393, gnl|oryCun1|scaffold_161858 (23943-23805) | |
| 250-393, gnl|oryCun1|scaffold_161858 (23943-23802) | |
| 250-393, gnl|panTro1|chr10 (119907085-119907245) | |
| 250-393, gnl|panTro1|chr11 (60798487-60798625) | |
| 250-393, gnl|rheMac2|chr11 (118963827-118963987) | |
| 250-393, gnl|rheMac2|chr11 (118963848-118963981) | |
| 250-393, gnl|rn3|chr12 (40261728-40261888) | |
| 250-393, gnl|rn3|chr15 (19211246-19211111) | |
| 250-393, gnl|tetNig1|chr12 (4450700-4450541) | |
| 250-393, gnl|tetNig1|chr12 (4450679-4450546) | |
| 250-393, gnl|xenTro1|scaffold_2 (478337-478492) | |
| 539-700, gnl|bosTau2|chr17 (32239460-32239299) | |
| 539-700, gnl|canFam2|chr26 (17458774-17458957) | |
| 539-700, gnl|danRer3|chr5 (2895547-2895381) | |
| 539-700, gnl|dasNov1|scaffold_40143 (9725-9864) | |
| 539-700, gnl|echTel1|scaffold_190687 (714-527) | |
| 539-700, gnl|fr1|chrUn (222768073-222768239) | |
| 539-700, gnl|hg17|chr12 (116925354-116925541) | |
| 539-700, gnl|Hg17|chr12 (116925374-116925535) | |
| 539-700, gnl|loxAfr1|scaffold_16953 (33981-34168) | |
| 539-700, gnl|mm7|chr5 (116613273-116613089) | |
| 539-700, gnl|Mm7|chr5 (116613254-116613093) | |
| 539-700, gnl|monDom2|scaffold_101 (2721772-2721600) | |
| 539-700, gnl|oryCun1|scaffold_209149 (33533-33346) | |
| 539-700, gnl|rheMac2|chr11 (118969147-118969334) | |
| 539-700, gnl|rn3|chr12 (40264680-40264864) | |
| 539-700, gnl|tetNig1|chr12 (4449960-4449771) | |
| 539-700, gnl|xenTro1|scaffold_2 (486564-486751) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| fty (0.17584) | |
| mcp (0.170648) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| ebs (0.118301) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.17584) | |
| mcp (0.170648) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| ebs (0.118301) |