Ss1.1-Ova1-OVR010020C12.5
|
AATTTTCCTGCCTGCAGGTGTGGAGGGGCCCCGAGAGGGCACTGGGGCTCCGTCACCTGA
AGAAGGCCACGTGGGCAGGGAGGGAAGGGGAGAGGCCAGGCCCATGCCACCCCTCCCGCC
CCCACACCTCCAGGCAAGGCAAGGTGGCCAGTGGACCGGAAACCCTTTATTTCCAAACTA
TAAATAGATCTGCTCTCTGGGAGCAGATCTCTGCTCTCCAGGTGACCAGGCCCCAGCGTC
TCCATCCCCCATTTCTAACGTTCTGCAGTCCACACCCTGTCCCCTTAGCAACCCGTCAGA
ACTGCAAATCACCATCCTGGCGCCCGGGGCCTGGCGGGCGGCTGAGAACAGCCCACTCCC
CTGGCCCGCTGTGACGCCAGCACAGCTCGGGCCCCTGCCCCGGGCAGCTCCGAGAGGCCG
GCCCGGGGCTCACCCATTTGAGCAGCTCCCTACCCTGGTACCACCACCGCGCGGTCACGT
GCTCTCCGAGGCCCAGCCCGGGAGGCGCCGGGCCCCCTGCTCCCCCGACAGGCTACTGGG
TCCCGGAGCGGCCGAGGCGTGTTAAGGTTGGGGAGTGGCCTGCTTCTAAGCTGGTGCCCT
GGCTGGTCACTGCTGCCCCTGGGCCACAAAGTACTCCTCCTCGTTGTCCTCCTCGTCCGG
CTGGCTGGTCCGGAGCAGGAGCTCCAGGTCGGGGTTGGAGCCCAGCCCTTTCAGGGACTT
AGGGGCGCCATCACCTCGGGCGTGCAGGGCTTTGAGGGCCACGTGCAGGGATATCCCCGA
GAGGCAGAGGGCGAAGCCCAGCCAGTTCAGGAGGCTGATCTGATCGCCCAGCAGATGAGC
TGCCAACAGCAAAGTGCAGACTTCCTTAAAAATGCCGGCAATGGAGAGAGTGAGGCTGGA
GGTTCTGGAGACCAGGAGGAACTCGGAGAAGCCCAAACCAAAGGCGAGAATCCCGCCAAG
GAAGAGGCTCCCCAGAACCCGCAGGAGCAGCCCGGTGTCCTGGAAACGGAAGATTTTCTC
AGATGTGGACAAATGGAGACCTTCAAATACAGCAAAGAGAGGGAACAGCCCCAGAAACAT
GAGTGGCTGCAGGTGGAACATGGTGTCGATGGGGTTCTGGAGCCCAAGTTCCGCCTTTTG
CAGGAGCATCTGGGTGAGGGTCCAGCGAATGCCGCCGATGAACGAGGCACCCAGCACCAA
GGCAAAGCCCTCGACGTTGAACTGCGTGGACTTGTAGGTGAACATGAAGAGGCCTCCGGC
GATGAGGAGAACCACCAAGACCAGCGCCGCTCGCAGCTCCTCCAGCTTGAAGATCAGAGA
GAAGATCAGGATGAAGAGGACAGCCGAGGACTTGGTCATTGTGTACAGCGAGACGGTGAT
ATAGAGGAAGCTCCAGTTGGACAAGCCCACGTCGAGCGCTGTCGCCAGTGCTGTGGGAGC
TACTCTTCTGAGGTAGTCGGTCCAGCTGAGCACCACGCGGGCCCTGTGGCTGGAGCATTG
AACCAGGGCCCGCGACAGGGCGGAGAACAGGAAGATCACGGCCAGGTGCAGCATCGTCAT
GAACAGGGGGAAGTGGAAGCTCTTGGTCAGCCACTTGTTGTAGAAGGTGATGCCGATGGA
GAAGCAGTAGTAGAGAAGGACCAGCCCCAGCGTCAACACCGCCCTCCACAGGAAGGCCAC
GTCGAGGGCCCACCTCCCCATCCGCGGAAGCGGCAGCTCCCCAGCTCTGGTCCGTGGGGG
CGGCGCCTCTCCTGAAGACGGCCGGCCAAGCTGGGCCCACGACTCTCAACAGGAAAGTCT
CCCGGCTGGCGCGCTCTCGGCCTCCATGATCCAGGACTGTCTGCTGAGCCCCAGGCACTG
TCCTCACCTAAGGGGCTGGTGGCCTGAGCCGACCCGCTCCATGATCCACTGCATACACGG
TTCGCCGGACCCCAGGGCTGAGGCTCGTAGCGGGCGCTTGGGATTCCTCCTCCCGGAAGT |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AATTTTCCTGCCTGCAGGTGTGGAGGGGCCCCGAGAGGGCACTGGGGCTCCGTCACCTGA
AGAAGGCCACGTGGGCAGGGAGGGAAGGGGAGAGGCCAGGCCCATGCCACCCCTCCCGCC
CCCACACCTCCAGGCAAGGCAAGGTGGCCAGTGGACCGGAAACCCTTTATTTCCAAACTA
TAAATAGATCTGCTCTCTGGGAGCAGATCTCTGCTCTCCAGGTGACCAGGCCCCAGCGTC
TCCATCCCCCATTTCTAACGTTCTGCAGTCCACACCCTGTCCCCTTAGCAACCCGTCAGA
ACTGCAAATCACCATCCTGGCGCCCGGGGCCTGGCGGGCGGCTGAGAACAGCCCACTCCC
CTGGCCCGCTGTGACGCCAGCACAGCTCGGGCCCCTGCCCCGGGCAGCTCCGAGAGGCCG
GCCCGGGGCTCACCCATTTGAGCAGCTCCCTACCCTGGTACCACCACCGCGCGGTCACGT
GCTCTCCGAGGCCCAGCCCGGGAGGCGCCGGGCCCCCTGCTCCCCCGACAGGCTACTGGG
TCCCGGAGCGGCCGAGGCGTGTTAAGGTTGGGGAGTGGCCTGCTTCTAAGCTGGTGCCCT
GGCTGGTCACTGCTGCCCCTGGGCCACAAAGTACTCCTCCTCGTTGTCCTCCTCGTCCGG
CTGGCTGGTCCGGAGCAGGAGCTCCAGGTCGGGGTTGGAGCCCAGCCCTTTCAGGGACTT
AGGGGCGCCATCACCTCGGGCGTGCAGGGCTTTGAGGGCCACGTGCAGGGATATCCCCGA
GAGGCAGAGGGCGAAGCCCAGCCAGTTCAGGAGGCTGATCTGATCGCCCAGCAGATGAGC
TGCCAACAGCAAAGTGCAGACTTCCTTAAAAATGCCGGCAATGGAGAGAGTGAGGCTGGA
GGTTCTGGAGACCAGGAGGAACTCGGAGAAGCCCAAACCAAAGGCGAGAATCCCGCCAAG
GAAGAGGCTCCCCAGAACCCGCAGGAGCAGCCCGGTGTCCTGGAAACGGAAGATTTTCTC
AGATGTGGACAAATGGAGACCTTCAAATACAGCAAAGAGAGGGAACAGCCCCAGAAACAT
GAGTGGCTGCAGGTGGAACATGGTGTCGATGGGGTTCTGGAGCCCAAGTTCCGCCTTTTG
CAGGAGCATCTGGGTGAGGGTCCAGCGAATGCCGCCGATGAACGAGGCACCCAGCACCAA
GGCAAAGCCCTCGACGTTGAACTGCGTGGACTTGTAGGTGAACATGAAGAGGCCTCCGGC
GATGAGGAGAACCACCAAGACCAGCGCCGCTCGCAGCTCCTCCAGCTTGAAGATCAGAGA
GAAGATCAGGATGAAGAGGACAGCCGAGGACTTGGTCATTGTGTACAGCGAGACGGTGAT
ATAGAGGAAGCTCCAGTTGGACAAGCCCACGTCGAGCGCTGTCGCCAGTGCTGTGGGAGC
TACTCTTCTGAGGTAGTCGGTCCAGCTGAGCACCACGCGGGCCCTGTGGCTGGAGCATTG
AACCAGGGCCCGCGACAGGGCGGAGAACAGGAAGATCACGGCCAGGTGCAGCATCGTCAT
GAACAGGGGGAAGTGGAAGCTCTTGGTCAGCCACTTGTTGTAGAAGGTGATGCCGATGGA
GAAGCAGTAGTAGAGAAGGACCAGCCCCAGCGTCAACACCGCCCTCCACAGGAAGGCCAC
GTCGAGGGCCCACCTCCCCATCCGCGGAAGCGGCAGCTCCCCAGCTCTGGTCCGTGGGGG
CGGCGCCTCTCCTGAAGACGGCCGGCCAAGCTGGGCCCACGACTCTCAACAGGAAAGTCT
CCCGGCTGGCGCGCTCTCGGCCTCCATGATCCAGGACTGTCTGCTGAGCCCCAGGCACTG
TCCTCACCTAAGGGGCTGGTGGCCTGAGCCGACCCGCTCCATGATCCACTGCATACACGG
TTCGCCGGACCCCAGGGCTGAGGCTCGTAGCGGGCGCTTGGGATTCCTCCTCCCGGAAGT |
|
gi|58651853|emb|CAI51615.1| |
Protein identifier
|
gi|58651853|emb|CAI51615.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
115-525, gnl|bosTau2|chr13 (55107621-55108021) |
|
115-525, gnl|canFam2|chr24 (36559622-36559899) |
|
115-525, gnl|dasNov1|scaffold_147711 (737-992) |
|
115-525, gnl|echTel1|scaffold_297871 (2882-3104) |
|
115-525, gnl|Hg17|chr20 (44411942-44412390) |
|
115-525, gnl|hg17|chrX (16674972-16675262) |
|
115-525, gnl|mm7|chr2 (165017398-165017654) |
|
115-525, gnl|Mm7|chr2 (165017353-165017704) |
|
115-525, gnl|monDom2|scaffold_35 (25807849-25808149) |
|
115-525, gnl|panTro1|chrX (17161669-17161975) |
|
115-525, gnl|rheMac2|chrX (14577311-14577617) |
|
115-525, gnl|rn3|chr3 (156223585-156223812) |
| |
|
591-740, gnl|bosTau2|chr13 (55108061-55108213) |
|
591-740, gnl|Hg17|chr20 (44412428-44412576) |
|
591-740, gnl|Mm7|chr2 (165017772-165017933) |
| |
|
864-1042, gnl|bosTau2|chr13 (55109793-55109971) |
|
864-1042, gnl|Hg17|chr20 (44414096-44414274) |
|
864-1042, gnl|Mm7|chr2 (165018894-165019072) |
| |
|
1112-1294, gnl|bosTau2|chr13 (55112357-55112540) |
|
1112-1294, gnl|Hg17|chr20 (44417082-44417288) |
|
1112-1294, gnl|Mm7|chr2 (165021419-165021609) |
| |
|
1582-1945, gnl|bosTau2|chr13 (55114820-55115174) |
|
1582-1945, gnl|Hg17|chr20 (44420433-44420814) |
|
1582-1945, gnl|Mm7|chr2 (165023903-165024259) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
115-525, gnl|bosTau2|chr13 (55107621-55108021) |
|
115-525, gnl|canFam2|chr24 (36559622-36559899) |
|
115-525, gnl|dasNov1|scaffold_147711 (737-992) |
|
115-525, gnl|echTel1|scaffold_297871 (2882-3104) |
|
115-525, gnl|Hg17|chr20 (44411942-44412390) |
|
115-525, gnl|hg17|chrX (16674972-16675262) |
|
115-525, gnl|mm7|chr2 (165017398-165017654) |
|
115-525, gnl|Mm7|chr2 (165017353-165017704) |
|
115-525, gnl|monDom2|scaffold_35 (25807849-25808149) |
|
115-525, gnl|panTro1|chrX (17161669-17161975) |
|
115-525, gnl|rheMac2|chrX (14577311-14577617) |
|
115-525, gnl|rn3|chr3 (156223585-156223812) |
| |
|
591-740, gnl|bosTau2|chr13 (55108061-55108213) |
|
591-740, gnl|Hg17|chr20 (44412428-44412576) |
|
591-740, gnl|Mm7|chr2 (165017772-165017933) |
| |
|
864-1042, gnl|bosTau2|chr13 (55109793-55109971) |
|
864-1042, gnl|Hg17|chr20 (44414096-44414274) |
|
864-1042, gnl|Mm7|chr2 (165018894-165019072) |
| |
|
1112-1294, gnl|bosTau2|chr13 (55112357-55112540) |
|
1112-1294, gnl|Hg17|chr20 (44417082-44417288) |
|
1112-1294, gnl|Mm7|chr2 (165021419-165021609) |
| |
|
1582-1945, gnl|bosTau2|chr13 (55114820-55115174) |
|
1582-1945, gnl|Hg17|chr20 (44420433-44420814) |
|
1582-1945, gnl|Mm7|chr2 (165023903-165024259) |
|
ill (0.351185) |
|
cje (0.165235) |
|
csp (0.161186) |
|
nca (0.136874) |
|
nmm (0.132802) |
|
cov (0.132153) |
|
cly (0.120642) |
|
jca (0.11396) |
|
cty (0.10408) |
|
jej (0.0989218) |
|
ill (0.351185) |
|
cje (0.165235) |
|
csp (0.161186) |
|
nca (0.136874) |
|
nmm (0.132802) |
|
cov (0.132153) |
|
cly (0.120642) |
|
jca (0.11396) |
|
cty (0.10408) |
|
jej (0.0989218) |
