Non-Coding RNA Search

Ss1.1-Ova1-OVR010020E05.5

Sequence:


               
               CCAGGAGACCGAGGGCGAAAAAGGTGGATCTCCGACGGTGCCCACCCCGGGGGCTCTGCT
TAAGCCTCTTATTGGCTACTCTGGGTGCCGGTCGCTACGCCATCCACCGCTGATTGGGCA
TCCGGCCGCCGCTCTGCGCGGCGCCGGCTCCGCCCCCGTCGGGTGTTTGTGGTGGGGCTG
CGGAGTCGCCGATCCCGCCGGAAGCGCCAGGACAATGGGGACCCGGGACGACGAGTACGA
CTACCTATTCAAAGTGGTGCTCATCGGGGATTCGGGAGTGGGGAAGAGCAACCTGCTGTC
CCGCTTCACCCGCAACGAGTTCAACCTGGAGAGCAAGAGCACCATCGGCGTGGAGTTTGC
CACCCGCAGCATCCAGGTGGACGGCAAGACCATCAAGGCACAGATCTGGGACACCGCCGG
CCAGGAGCGCTACCGGGCCATCACCTCTGCATACTACCGTGGTGCAGTGGGTGCGCTGCT
GGTGTATGATATTGCCAAGCACCTGACATACGAGAACGTGGAGCGCTGGCTGAAGGAGCT
GCGGGACCACGCCGACAGCAACATTGTCATCATGCTGGTGGGCAACAAGAGCGACTTGCG
CCACCTGCGGGCCGTGCCCACGGACGAGGCCCGCGCCTTTGCAGAAAAGAATAACTTGTC
CTTCATTGAGACCTCAGCCTTGGATTCCACCAACGTAGAGGAAGCTTTCAAGAATATCCT
CACAGAGATCTACCGCATCGTGTCACAGAAGCAGATTGCAGACCGTGCAGCACACGACGA
GTCCCCCGGAAACAACGTGGTGGACATCAGCGTGCCGCCCACCACCGACGGACAGAAACC
CAACAAGCTGCAGTGCTGCCAGAACCTGTGACCGCCCAGCGCCTGGGCTGAGCGTGCGTG
CACGTCCTCGTCCTCTACCCACCCCTCTCCGAGCTGTCCTCCCTGCCCCCTCCCTCTCTG
CCCCTCTGTGACTGGCTCCCGCCCTCCCATCAAGCTCCGCACGAAGAACAGGAGTCGAGT
GGCATCTCCTGTCCTGCCCAAGGAAAGCTAGAAGCCCCGGCTGCTGCACCTGCTCTCCTT
GGGTCCCAGTGGGCATCTCGGCGTGGCGGAGAGGGTGGCAGGATGGACGGGGCCCGGCCA
GAGGCAAGGAGGATGGGCACACCGAGCAATCTTCTCCAGTTTTCCACGGCAGACTCCAGG
GAGCAATCGCCGCCATCCCTCTCTGGCCCGTTGGCTCAGCTGGCCCCCGGTTCCCACACA
GAATCCCACTCCGGGCTGAAGCCCGAAGCTTAAGGCGCCAGGGACCGGGCAGGCGGACAC
TCTCGGCTCTCGGCATCCCGCTCTCCCGCGCACAGCCAGCATCGTACACGCGCCTTCAAC
CGACCTCACCCGTGCGTGCGCGACTCCAGCTCCTGCCTGTAGATTTCTGCTGAGAGAAGA
CAGCCCCCCCCCACCACCTTGCCCTCCTTTTTGCACGCAGCGCGCTCTCCACCCCACCCC
ACCCTGTATCCCTCTGTCTTGTTTCCCTGTCTGGTCAGGAACCTGTTTGCCAGTGAAGCA
ATATCTCCGTGTTTTGTATATACAACCGCTCTTGTAGCCTTTGGTTTTTTTGTTATTGTA
GAGAAACACAGATTCTTTATACACTTTGTAAGATTACGCCAAACCCTAGCTCTCGATCTC
TTATTCTCCTCCCTGTGGCCCCTGCACTGTTGCCCCATGCCTCTTTTCTCTCTCACGGTT
ACTAAAATGTATAATCCGACTTCCTGTACAGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGGAGACCGAGGGCGAAAAAGGTGGATCTCCGACGGTGCCCACCCCGGGGGCTCTGCT
TAAGCCTCTTATTGGCTACTCTGGGTGCCGGTCGCTACGCCATCCACCGCTGATTGGGCA
TCCGGCCGCCGCTCTGCGCGGCGCCGGCTCCGCCCCCGTCGGGTGTTTGTGGTGGGGCTG
CGGAGTCGCCGATCCCGCCGGAAGCGCCAGGACAATGGGGACCCGGGACGACGAGTACGA
CTACCTATTCAAAGTGGTGCTCATCGGGGATTCGGGAGTGGGGAAGAGCAACCTGCTGTC
CCGCTTCACCCGCAACGAGTTCAACCTGGAGAGCAAGAGCACCATCGGCGTGGAGTTTGC
CACCCGCAGCATCCAGGTGGACGGCAAGACCATCAAGGCACAGATCTGGGACACCGCCGG
CCAGGAGCGCTACCGGGCCATCACCTCTGCATACTACCGTGGTGCAGTGGGTGCGCTGCT
GGTGTATGATATTGCCAAGCACCTGACATACGAGAACGTGGAGCGCTGGCTGAAGGAGCT
GCGGGACCACGCCGACAGCAACATTGTCATCATGCTGGTGGGCAACAAGAGCGACTTGCG
CCACCTGCGGGCCGTGCCCACGGACGAGGCCCGCGCCTTTGCAGAAAAGAATAACTTGTC
CTTCATTGAGACCTCAGCCTTGGATTCCACCAACGTAGAGGAAGCTTTCAAGAATATCCT
CACAGAGATCTACCGCATCGTGTCACAGAAGCAGATTGCAGACCGTGCAGCACACGACGA
GTCCCCCGGAAACAACGTGGTGGACATCAGCGTGCCGCCCACCACCGACGGACAGAAACC
CAACAAGCTGCAGTGCTGCCAGAACCTGTGACCGCCCAGCGCCTGGGCTGAGCGTGCGTG
CACGTCCTCGTCCTCTACCCACCCCTCTCCGAGCTGTCCTCCCTGCCCCCTCCCTCTCTG
CCCCTCTGTGACTGGCTCCCGCCCTCCCATCAAGCTCCGCACGAAGAACAGGAGTCGAGT
GGCATCTCCTGTCCTGCCCAAGGAAAGCTAGAAGCCCCGGCTGCTGCACCTGCTCTCCTT
GGGTCCCAGTGGGCATCTCGGCGTGGCGGAGAGGGTGGCAGGATGGACGGGGCCCGGCCA
GAGGCAAGGAGGATGGGCACACCGAGCAATCTTCTCCAGTTTTCCACGGCAGACTCCAGG
GAGCAATCGCCGCCATCCCTCTCTGGCCCGTTGGCTCAGCTGGCCCCCGGTTCCCACACA
GAATCCCACTCCGGGCTGAAGCCCGAAGCTTAAGGCGCCAGGGACCGGGCAGGCGGACAC
TCTCGGCTCTCGGCATCCCGCTCTCCCGCGCACAGCCAGCATCGTACACGCGCCTTCAAC
CGACCTCACCCGTGCGTGCGCGACTCCAGCTCCTGCCTGTAGATTTCTGCTGAGAGAAGA
CAGCCCCCCCCCACCACCTTGCCCTCCTTTTTGCACGCAGCGCGCTCTCCACCCCACCCC
ACCCTGTATCCCTCTGTCTTGTTTCCCTGTCTGGTCAGGAACCTGTTTGCCAGTGAAGCA
ATATCTCCGTGTTTTGTATATACAACCGCTCTTGTAGCCTTTGGTTTTTTTGTTATTGTA
GAGAAACACAGATTCTTTATACACTTTGTAAGATTACGCCAAACCCTAGCTCTCGATCTC
TTATTCTCCTCCCTGTGGCCCCTGCACTGTTGCCCCATGCCTCTTTTCTCTCTCACGGTT
ACTAAAATGTATAATCCGACTTCCTGTACAGAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|14249144|ref|NP_116006.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14249144|ref|NP_116006.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               212-865, gnl|bosTau2|chr10 (7381161-7381808)
               

               
               212-865, gnl|Hg17|chr10 (95631688-95631039)
               

               
               212-865, gnl|Mm7|chr9 (64758079-64746496)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               212-865, gnl|bosTau2|chr10 (7381161-7381808)
               

               
               212-865, gnl|Hg17|chr10 (95631688-95631039)
               

               
               212-865, gnl|Mm7|chr9 (64758079-64746496)

Expressed library(ies): 27 entry(ies)

More info

Expressed library(ies): 27 entry(ies)

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               ece (1.14653)
               

               
               ebs (0.828108)
               

               
               ecc (0.575175)
               

               
               fce (0.543183)
               

               
               cly (0.482567)
               

               
               elu (0.385356)
               

               
               jca (0.34188)
               

               
               nje (0.33184)
               

               
               nco (0.323468)
               

               
               fat (0.294855)
               

               
               cga (0.279096)
               

               
               nmm (0.265604)
               

               
               ese (0.253004)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (1.14653)
               

               
               ebs (0.828108)
               

               
               ecc (0.575175)
               

               
               fce (0.543183)
               

               
               cly (0.482567)
               

               
               elu (0.385356)
               

               
               jca (0.34188)
               

               
               nje (0.33184)
               

               
               nco (0.323468)
               

               
               fat (0.294855)
               

               
               cga (0.279096)
               

               
               nmm (0.265604)
               

               
               ese (0.253004)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

	212-865, gnl\|bosTau2\|chr10 (7381161-7381808)
	212-865, gnl\|Hg17\|chr10 (95631688-95631039)
	212-865, gnl\|Mm7\|chr9 (64758079-64746496)

	ece (1.14653)
	ebs (0.828108)
	ecc (0.575175)
	fce (0.543183)
	cly (0.482567)
	elu (0.385356)
	jca (0.34188)
	nje (0.33184)
	nco (0.323468)
	fat (0.294855)
	cga (0.279096)
	nmm (0.265604)
	ese (0.253004)
	nep (0.183925)
	ill (0.175593)
	ton (0.1755)
	fbs (0.175346)
	eye (0.170503)
	cje (0.165235)
	csp (0.161186)
	hyp (0.142837)
	lnt (0.142308)
	che (0.136314)
	ste (0.135208)
	pla (0.133672)
	pgl (0.118483)
	eje (0.0988338)