Ss1.1-Ova1-OVR010020F07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGAAAAAGTACAGAGTCCAGGGAAAGACTTGCTCGTAACTTTCTGGATTCTTGGATTTT TTTTTTTTTTTTTTTTTTTTGCCTTTTCTTAACTTTCACTAAGGATTACATTACTGTAGT CTGATGTGTCTTCCCCAAGGCTACGAAATTTGACAAGCTGCACTTTTTCTTACGCCAATG GTTTCTACTTTAAGCCAAAGGACTGCTTATAATTTCACTAAGAATGTCTTCTAATTCGGA TACTGGAGGTTTACAAGAATCTCTAAAGCCCGGACTTACACCTATTGTGTCTCAGTTTAA AATGGTGAATTACTCCTATGATGAAGATCTCGAAGAGCTCTGTCCTGTGTGTGGAGATAA AGTGTCTGGGTACCACTATGGGCTCCTCACCTGTGAAAGCTGCAAGGGCTTTTTTAAGCG AACAGTCCAAAATAATAAAAGGTACACATGTATAGAAAACCAGAACTGCCAGATTGACAA AACACAGAGAAAGCGTTGTCCTTACTGTCGATTTCAAAAATGTCTTAGTGTTGGAATGAA GCTAGAAGCGGTAAGGGCCGACCGCATGCGTGGAGGAAGGAATAAATTTGGGCCCATGTA CAAGAGGGACCGGGCTCTGAAGCAGCAGAAAAAGGCCCTCATCCGAGCCAATGGACTTAA GCTGGAAGCCATGTCTCAGGTGATCCAAGCCATGCCCTCCGAGCTGAGCCTCTCCTCCGC CATTCAGAGCATCCATTCCGCCTCCAAAGGCCTACCTCTGAACCACGCTGCCTTGCCTCC TACAGACTATGATCGCAGCCCCTTTGTCACGTCCCCCATCAGCATGACGATGCCACCCCA CGGCAGCCTGCAGGGTTACCAGACCTACGGCCACTTTCCCAGCCGGGCCATCAAGTCTGA GTACCCAGAACCCTACACCAGCTCGCCCGAGTCCATCATGGGCTATTCCTACATGGACAC GTACCAGACCAGCTCCCCGGCCAGCATCCCCCACCTGATCCTGGAACTGCTCAAGTGCGA GCCGGATGAGCCGCAGGTCCAGGCCAAGATAATGGCCTACCTGCAGCAGGAGCAGGCCAG CCGCAGCAAGCACGAGAGGCTCACCACGTTTGGGCTCATGTGCAAGATGGCAGACCAGAC CCTGTTCTCCATCGTCGAGTGGGCCCGGAGTAGCGTCTTCTTCCGAGAGCTCAAGGTCGA TGACCAGATGAAGCTGCTTCAGAACTGCTGGAGTGAGCTCTTAATTCTCGACCACATTTA CCGACAAGTGGTACATGGAAAGGAAGGGTCCATCTTCCTGGTTACTGGGCAACAAGTGGA CTATTCCATCATAGCATCGCAAGCGGGGACCACACTCAACAACCTCATGAGTCACGCGCA GGAGTTGGTGGCAAAGCTTCGTTCTCTGCAGTTTGATCAACGAGAGTTTGTGTGTCTGAA ATTCTTGGTGCTCTTCAGTTTAGATGTCAAAAACCTTGAGAACTTCCAGCTGGTCGAAGG CGTCCAGGAGCAAGTCAATGCTGCCCTGCTGGATTACACCATGTGCAACTACCCGCAGCA GACGGAGAAATTCGGGCAGCTGCTGCTTCGACTACCTGAAATCCGGGCCATCAGCATGCA GGCGGAGGAATACCTGTACTATAAGCACCTGAACGGGGATGTGCCCTACAACAATCTCCT GATTGAAATGTTGCATGCCAAAAGAGCTTAGTCACAGCGCTTAGGAGCTCGGCTTCCAAA CCAGAAAGGGATTGGTGGTGAGGGAGGCGGGGAGGAAGAACAGGAAGAAAGGAGAAAAAA AATCCCCCCCCCCTAAAAAATTCTGAACGGCTTTAAGCAACACTAATGAGAAACTTGGTT GAAAAGCTATTGAATTTTCAAAGGCATAATCATCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGAAAAAGTACAGAGTCCAGGGAAAGACTTGCTCGTAACTTTCTGGATTCTTGGATTTT TTTTTTTTTTTTTTTTTTTTGCCTTTTCTTAACTTTCACTAAGGATTACATTACTGTAGT CTGATGTGTCTTCCCCAAGGCTACGAAATTTGACAAGCTGCACTTTTTCTTACGCCAATG GTTTCTACTTTAAGCCAAAGGACTGCTTATAATTTCACTAAGAATGTCTTCTAATTCGGA TACTGGAGGTTTACAAGAATCTCTAAAGCCCGGACTTACACCTATTGTGTCTCAGTTTAA AATGGTGAATTACTCCTATGATGAAGATCTCGAAGAGCTCTGTCCTGTGTGTGGAGATAA AGTGTCTGGGTACCACTATGGGCTCCTCACCTGTGAAAGCTGCAAGGGCTTTTTTAAGCG AACAGTCCAAAATAATAAAAGGTACACATGTATAGAAAACCAGAACTGCCAGATTGACAA AACACAGAGAAAGCGTTGTCCTTACTGTCGATTTCAAAAATGTCTTAGTGTTGGAATGAA GCTAGAAGCGGTAAGGGCCGACCGCATGCGTGGAGGAAGGAATAAATTTGGGCCCATGTA CAAGAGGGACCGGGCTCTGAAGCAGCAGAAAAAGGCCCTCATCCGAGCCAATGGACTTAA GCTGGAAGCCATGTCTCAGGTGATCCAAGCCATGCCCTCCGAGCTGAGCCTCTCCTCCGC CATTCAGAGCATCCATTCCGCCTCCAAAGGCCTACCTCTGAACCACGCTGCCTTGCCTCC TACAGACTATGATCGCAGCCCCTTTGTCACGTCCCCCATCAGCATGACGATGCCACCCCA CGGCAGCCTGCAGGGTTACCAGACCTACGGCCACTTTCCCAGCCGGGCCATCAAGTCTGA GTACCCAGAACCCTACACCAGCTCGCCCGAGTCCATCATGGGCTATTCCTACATGGACAC GTACCAGACCAGCTCCCCGGCCAGCATCCCCCACCTGATCCTGGAACTGCTCAAGTGCGA GCCGGATGAGCCGCAGGTCCAGGCCAAGATAATGGCCTACCTGCAGCAGGAGCAGGCCAG CCGCAGCAAGCACGAGAGGCTCACCACGTTTGGGCTCATGTGCAAGATGGCAGACCAGAC CCTGTTCTCCATCGTCGAGTGGGCCCGGAGTAGCGTCTTCTTCCGAGAGCTCAAGGTCGA TGACCAGATGAAGCTGCTTCAGAACTGCTGGAGTGAGCTCTTAATTCTCGACCACATTTA CCGACAAGTGGTACATGGAAAGGAAGGGTCCATCTTCCTGGTTACTGGGCAACAAGTGGA CTATTCCATCATAGCATCGCAAGCGGGGACCACACTCAACAACCTCATGAGTCACGCGCA GGAGTTGGTGGCAAAGCTTCGTTCTCTGCAGTTTGATCAACGAGAGTTTGTGTGTCTGAA ATTCTTGGTGCTCTTCAGTTTAGATGTCAAAAACCTTGAGAACTTCCAGCTGGTCGAAGG CGTCCAGGAGCAAGTCAATGCTGCCCTGCTGGATTACACCATGTGCAACTACCCGCAGCA GACGGAGAAATTCGGGCAGCTGCTGCTTCGACTACCTGAAATCCGGGCCATCAGCATGCA GGCGGAGGAATACCTGTACTATAAGCACCTGAACGGGGATGTGCCCTACAACAATCTCCT GATTGAAATGTTGCATGCCAAAAGAGCTTAGTCACAGCGCTTAGGAGCTCGGCTTCCAAA CCAGAAAGGGATTGGTGGTGAGGGAGGCGGGGAGGAAGAACAGGAAGAAAGGAGAAAAAA AATCCCCCCCCCCTAAAAAATTCTGAACGGCTTTAAGCAACACTAATGAGAAACTTGGTT GAAAAGCTATTGAATTTTCAAAGGCATAATCATCAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 5-287, gnl|bosTau2|chr16 (56654780-56654502) | |
| 5-287, gnl|Hg17|chr1 (196728428-196728696) | |
| 5-287, gnl|Mm7|chr1 (136848587-136848319) | |
| 547-666, gnl|bosTau2|chr11 (72828548-72828429) | |
| 547-666, gnl|canFam2|chr9 (61806961-61806808) | |
| 547-666, gnl|danRer3|chrUn (21584096-21584241) | |
| 547-666, gnl|dasNov1|scaffold_76270 (3308-3177) | |
| 547-666, gnl|echTel1|scaffold_312808 (26458-26604) | |
| 547-666, gnl|fr1|chrUn (189961468-189961624) | |
| 547-666, gnl|galGal2|chr17 (995079-994926) | |
| 547-666, gnl|hg17|chr9 (124342416-124342575) | |
| 547-666, gnl|Hg17|chr9 (124342550-124342431) | |
| 547-666, gnl|loxAfr1|scaffold_61149 (5683-5524) | |
| 547-666, gnl|mm7|chr2 (38715718-38715877) | |
| 547-666, gnl|Mm7|chr2 (38715852-38715733) | |
| 547-666, gnl|monDom2|scaffold_38 (18523203-18523356) | |
| 547-666, gnl|oryCun1|scaffold_194589 (4742-4582) | |
| 547-666, gnl|panTro1|chr11 (109085410-109085569) | |
| 547-666, gnl|rheMac2|chr15 (11254547-11254388) | |
| 547-666, gnl|rn3|chr3 (18410102-18410261) | |
| 547-666, gnl|tetNig1|chrUn_random (19850039-19849884) | |
| 547-666, gnl|xenTro1|scaffold_448 (81978-81842) | |
| 1194-1318, gnl|bosTau2|chr16 (56578193-56578069) | |
| 1194-1318, gnl|canFam2|chr7 (5945722-5945580) | |
| 1194-1318, gnl|danRer3|chr22 (18064836-18064979) | |
| 1194-1318, gnl|dasNov1|scaffold_76270 (3771-3892) | |
| 1194-1318, gnl|echTel1|scaffold_300138 (937-1082) | |
| 1194-1318, gnl|fr1|chrUn (257344273-257344130) | |
| 1194-1318, gnl|galGal2|chr8 (1592792-1592653) | |
| 1194-1318, gnl|hg17|chr1 (196811966-196812112) | |
| 1194-1318, gnl|Hg17|chr1 (196811985-196812109) | |
| 1194-1318, gnl|loxAfr1|scaffold_25245 (30057-30199) | |
| 1194-1318, gnl|mm7|chr1 (136778913-136778771) | |
| 1194-1318, gnl|Mm7|chr1 (136778896-136778772) | |
| 1194-1318, gnl|monDom2|scaffold_16 (60183584-60183726) | |
| 1194-1318, gnl|oryCun1|scaffold_213360 (21136-21278) | |
| 1194-1318, gnl|panTro1|chr1 (179494160-179494306) | |
| 1194-1318, gnl|rheMac2|chr1 (170378792-170378638) | |
| 1194-1318, gnl|rn3|chr13 (49992217-49992075) | |
| 1194-1318, gnl|tetNig1|chr1 (14066028-14066157) | |
| 1194-1318, gnl|xenTro1|scaffold_858 (201550-201419) | |
| 1462-1701, gnl|bosTau2|chr11 (72812230-72811991) | |
| 1462-1701, gnl|canFam2|chr9 (61824402-61824142) | |
| 1462-1701, gnl|danRer3|chrUn (21551005-21551264) | |
| 1462-1701, gnl|dasNov1|scaffold_80595 (6885-7145) | |
| 1462-1701, gnl|echTel1|scaffold_284076 (112331-112079) | |
| 1462-1701, gnl|fr1|chrUn (189960071-189960328) | |
| 1462-1701, gnl|galGal2|chr17 (1002604-1002347) | |
| 1462-1701, gnl|hg17|chr9 (124324588-124324848) | |
| 1462-1701, gnl|Hg17|chr9 (124324840-124324601) | |
| 1462-1701, gnl|loxAfr1|scaffold_17192 (5259-4999) | |
| 1462-1701, gnl|mm7|chr2 (38701325-38701585) | |
| 1462-1701, gnl|Mm7|chr2 (38701577-38701338) | |
| 1462-1701, gnl|monDom2|scaffold_38 (18489524-18489789) | |
| 1462-1701, gnl|oryCun1|scaffold_148217 (4385-4644) | |
| 1462-1701, gnl|panTro1|chr11 (109067562-109067822) | |
| 1462-1701, gnl|rheMac2|chr15 (11272459-11272199) | |
| 1462-1701, gnl|rn3|chr3 (18395931-18396191) | |
| 1462-1701, gnl|tetNig1|chrUn_random (19857149-19856893) | |
| 1462-1701, gnl|xenTro1|scaffold_448 (137804-137547) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-287, gnl|bosTau2|chr16 (56654780-56654502) | |
| 5-287, gnl|Hg17|chr1 (196728428-196728696) | |
| 5-287, gnl|Mm7|chr1 (136848587-136848319) | |
| 547-666, gnl|bosTau2|chr11 (72828548-72828429) | |
| 547-666, gnl|canFam2|chr9 (61806961-61806808) | |
| 547-666, gnl|danRer3|chrUn (21584096-21584241) | |
| 547-666, gnl|dasNov1|scaffold_76270 (3308-3177) | |
| 547-666, gnl|echTel1|scaffold_312808 (26458-26604) | |
| 547-666, gnl|fr1|chrUn (189961468-189961624) | |
| 547-666, gnl|galGal2|chr17 (995079-994926) | |
| 547-666, gnl|hg17|chr9 (124342416-124342575) | |
| 547-666, gnl|Hg17|chr9 (124342550-124342431) | |
| 547-666, gnl|loxAfr1|scaffold_61149 (5683-5524) | |
| 547-666, gnl|mm7|chr2 (38715718-38715877) | |
| 547-666, gnl|Mm7|chr2 (38715852-38715733) | |
| 547-666, gnl|monDom2|scaffold_38 (18523203-18523356) | |
| 547-666, gnl|oryCun1|scaffold_194589 (4742-4582) | |
| 547-666, gnl|panTro1|chr11 (109085410-109085569) | |
| 547-666, gnl|rheMac2|chr15 (11254547-11254388) | |
| 547-666, gnl|rn3|chr3 (18410102-18410261) | |
| 547-666, gnl|tetNig1|chrUn_random (19850039-19849884) | |
| 547-666, gnl|xenTro1|scaffold_448 (81978-81842) | |
| 1194-1318, gnl|bosTau2|chr16 (56578193-56578069) | |
| 1194-1318, gnl|canFam2|chr7 (5945722-5945580) | |
| 1194-1318, gnl|danRer3|chr22 (18064836-18064979) | |
| 1194-1318, gnl|dasNov1|scaffold_76270 (3771-3892) | |
| 1194-1318, gnl|echTel1|scaffold_300138 (937-1082) | |
| 1194-1318, gnl|fr1|chrUn (257344273-257344130) | |
| 1194-1318, gnl|galGal2|chr8 (1592792-1592653) | |
| 1194-1318, gnl|hg17|chr1 (196811966-196812112) | |
| 1194-1318, gnl|Hg17|chr1 (196811985-196812109) | |
| 1194-1318, gnl|loxAfr1|scaffold_25245 (30057-30199) | |
| 1194-1318, gnl|mm7|chr1 (136778913-136778771) | |
| 1194-1318, gnl|Mm7|chr1 (136778896-136778772) | |
| 1194-1318, gnl|monDom2|scaffold_16 (60183584-60183726) | |
| 1194-1318, gnl|oryCun1|scaffold_213360 (21136-21278) | |
| 1194-1318, gnl|panTro1|chr1 (179494160-179494306) | |
| 1194-1318, gnl|rheMac2|chr1 (170378792-170378638) | |
| 1194-1318, gnl|rn3|chr13 (49992217-49992075) | |
| 1194-1318, gnl|tetNig1|chr1 (14066028-14066157) | |
| 1194-1318, gnl|xenTro1|scaffold_858 (201550-201419) | |
| 1462-1701, gnl|bosTau2|chr11 (72812230-72811991) | |
| 1462-1701, gnl|canFam2|chr9 (61824402-61824142) | |
| 1462-1701, gnl|danRer3|chrUn (21551005-21551264) | |
| 1462-1701, gnl|dasNov1|scaffold_80595 (6885-7145) | |
| 1462-1701, gnl|echTel1|scaffold_284076 (112331-112079) | |
| 1462-1701, gnl|fr1|chrUn (189960071-189960328) | |
| 1462-1701, gnl|galGal2|chr17 (1002604-1002347) | |
| 1462-1701, gnl|hg17|chr9 (124324588-124324848) | |
| 1462-1701, gnl|Hg17|chr9 (124324840-124324601) | |
| 1462-1701, gnl|loxAfr1|scaffold_17192 (5259-4999) | |
| 1462-1701, gnl|mm7|chr2 (38701325-38701585) | |
| 1462-1701, gnl|Mm7|chr2 (38701577-38701338) | |
| 1462-1701, gnl|monDom2|scaffold_38 (18489524-18489789) | |
| 1462-1701, gnl|oryCun1|scaffold_148217 (4385-4644) | |
| 1462-1701, gnl|panTro1|chr11 (109067562-109067822) | |
| 1462-1701, gnl|rheMac2|chr15 (11272459-11272199) | |
| 1462-1701, gnl|rn3|chr3 (18395931-18396191) | |
| 1462-1701, gnl|tetNig1|chrUn_random (19857149-19856893) | |
| 1462-1701, gnl|xenTro1|scaffold_448 (137804-137547) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.0989218) |