Ss1.1-Ova1-OVR010020F08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGAGCTCAGGGTCCGGTCGCTGCAGCAACTCCGAGCTCTCGAGCGAAGCGCGGGGCGAG GGCGGGCCAGCGGCAAGAAGGGCCAGGAGCCGGAGTCTTGGCGGGAGCGGCCGAGGAGCC CCCAGCAACCGCGCGGCGGCCCTGAGCTACGCGGCCGAAGCTCCTGCAAACTTGGGCGCG CGCTCACGCCAGTGGGCCGGCGGTCGGAGCGATGAAGATGGTGGCCCCCTGGACGCGGTT CTACTCCAACAGCTGCTGCCTGTGCTGCCATGTCCGCACGGGCACCATCCTGCTGGGCGT CTGGTACCTGATCATCAATGCAGTGGTGCTGTTGATTCTGCTGAGCGCCCTGGCTGATCC CGATCAGTATCACTTTTCAAGTTCTGAACTAGGAGGTGACTTTGAGTTCATGGATGATGC CAACATGTGCATTGCTATCGCCATTTCTCTTCTCATGATCCTGATCTGTGCGATGGCGAC TTACGGAGCATACAAGCAACACGCAGCCTGGATCATCCCCTTCTTCTGCTACCAGATCTT TGATTTTGCCCTGAACACCTTGGTTGCAATCACCATCCTTGTGTATCCAAACTCCATCCA GGAATACATACGACAGCTGCCTCCTAATTTTCCTTACAAAGATGATATCATGGCGGTGAA TCCTACCTGTTTGGTCCTTATTATTCTTCTGTTTATCAGCATCATGTTGACTTTTAAGGG TTACTTGATTAGCTGTGTTTGGAACTGCTACCGATACATCAATGGCAGGAATTCCTCCGA CGTCCTGGTTTATGTTACCAGCAATGACACTACGGTGCTGTTGCCTCCGTATGATGAGGC CCCAGCGAATGGCGCTGCCAAGGAGCCGCCGCCACCTTACGTGTCTGCCTAGACCTGGAA GTGGGCACAGCTGAGAGCGACAGCTTGCCTCTCAGACATCAGAGCAATAGTTCTTTAATT TCACTTCTGAGATGAGCTCTCTGAGCTTTTTTGTTGCAGAGATGCTCCAGTTTAAAATGT TAGATGTTAAGTTGAAACTATCTGTAGTTCGAAACATATGCTTTTTAGCTAGAGCACTGT ATTAGAGTAACTGTAGCATTTTCCCTGTGGGGGGTGGGAGCGGTGGGCTCCCCTGGTGTC CCCTCAGCATCCACACTGAACCCCCAGCATCCAAGAATTTGTGTCCCTTCTCTCTGTTCC CTCTTTCTCTTTTGCAAGTGTGAAAGAAAACCAAAATTAGACAGTGCTTTTCTTAGGCCA TTCCAGTGCATAGAACAAACCCTGAGGAGAGCCAGGGATGTTAATTACGGAAGGAGGCCA TGTATATACATTAATAAAACAGGCATTTCCTCAGATCCCTTTATGATTTAAATTCGGTGG CAGTTTGATTTTGCTGGTCGAGTATTTTGGCCACAGGCTAAATTGAGACCCTTTGACCAT CCCGGGCAGTGAGAGCCAGCAGTCACCCCTTCCCAGTGGCCGCTCCTGTCACTTGTGTCT GGGGTCGTGGCATGGCGTGTTGGGGGGGCAACTCTTTTGTTTGGTAGTGCATGGTGTCGG GGTTCCCCCCCCCCTTTCTGGTTTCCCATCCCCCTTCAGAGCCCCCTTTCACTAAACGTT CTGCCCTAGCCTGACTCAGGACATCCGGCATCCTTTGTTCAGCGGGATTTCTGGTCCATA TTTACCTAGCAATATAAGGAGAGGCTTCTCTCCTGCAAGGCACGTCTCATTGCACGTCTA ATAATTACACCTCGTCTTCTTTTACAATGAGTATAAAACAGTGTTCTCGGAATAACGGGA GGGAGGGTGCTTTCCTTGTGAAATGCCCTTATCTGGACTACCTGTATCTTGGGGGACTTT TATATATTCCTGTGTTCAAAAGCCACAGCTCTCCTGTTGGTTCATCTTTGAATGTGCTAT ATACATGAAGGCTTTTGCAATTAAAAATGACATTTGGCCACATCCAAGAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGAGCTCAGGGTCCGGTCGCTGCAGCAACTCCGAGCTCTCGAGCGAAGCGCGGGGCGAG GGCGGGCCAGCGGCAAGAAGGGCCAGGAGCCGGAGTCTTGGCGGGAGCGGCCGAGGAGCC CCCAGCAACCGCGCGGCGGCCCTGAGCTACGCGGCCGAAGCTCCTGCAAACTTGGGCGCG CGCTCACGCCAGTGGGCCGGCGGTCGGAGCGATGAAGATGGTGGCCCCCTGGACGCGGTT CTACTCCAACAGCTGCTGCCTGTGCTGCCATGTCCGCACGGGCACCATCCTGCTGGGCGT CTGGTACCTGATCATCAATGCAGTGGTGCTGTTGATTCTGCTGAGCGCCCTGGCTGATCC CGATCAGTATCACTTTTCAAGTTCTGAACTAGGAGGTGACTTTGAGTTCATGGATGATGC CAACATGTGCATTGCTATCGCCATTTCTCTTCTCATGATCCTGATCTGTGCGATGGCGAC TTACGGAGCATACAAGCAACACGCAGCCTGGATCATCCCCTTCTTCTGCTACCAGATCTT TGATTTTGCCCTGAACACCTTGGTTGCAATCACCATCCTTGTGTATCCAAACTCCATCCA GGAATACATACGACAGCTGCCTCCTAATTTTCCTTACAAAGATGATATCATGGCGGTGAA TCCTACCTGTTTGGTCCTTATTATTCTTCTGTTTATCAGCATCATGTTGACTTTTAAGGG TTACTTGATTAGCTGTGTTTGGAACTGCTACCGATACATCAATGGCAGGAATTCCTCCGA CGTCCTGGTTTATGTTACCAGCAATGACACTACGGTGCTGTTGCCTCCGTATGATGAGGC CCCAGCGAATGGCGCTGCCAAGGAGCCGCCGCCACCTTACGTGTCTGCCTAGACCTGGAA GTGGGCACAGCTGAGAGCGACAGCTTGCCTCTCAGACATCAGAGCAATAGTTCTTTAATT TCACTTCTGAGATGAGCTCTCTGAGCTTTTTTGTTGCAGAGATGCTCCAGTTTAAAATGT TAGATGTTAAGTTGAAACTATCTGTAGTTCGAAACATATGCTTTTTAGCTAGAGCACTGT ATTAGAGTAACTGTAGCATTTTCCCTGTGGGGGGTGGGAGCGGTGGGCTCCCCTGGTGTC CCCTCAGCATCCACACTGAACCCCCAGCATCCAAGAATTTGTGTCCCTTCTCTCTGTTCC CTCTTTCTCTTTTGCAAGTGTGAAAGAAAACCAAAATTAGACAGTGCTTTTCTTAGGCCA TTCCAGTGCATAGAACAAACCCTGAGGAGAGCCAGGGATGTTAATTACGGAAGGAGGCCA TGTATATACATTAATAAAACAGGCATTTCCTCAGATCCCTTTATGATTTAAATTCGGTGG CAGTTTGATTTTGCTGGTCGAGTATTTTGGCCACAGGCTAAATTGAGACCCTTTGACCAT CCCGGGCAGTGAGAGCCAGCAGTCACCCCTTCCCAGTGGCCGCTCCTGTCACTTGTGTCT GGGGTCGTGGCATGGCGTGTTGGGGGGGCAACTCTTTTGTTTGGTAGTGCATGGTGTCGG GGTTCCCCCCCCCCTTTCTGGTTTCCCATCCCCCTTCAGAGCCCCCTTTCACTAAACGTT CTGCCCTAGCCTGACTCAGGACATCCGGCATCCTTTGTTCAGCGGGATTTCTGGTCCATA TTTACCTAGCAATATAAGGAGAGGCTTCTCTCCTGCAAGGCACGTCTCATTGCACGTCTA ATAATTACACCTCGTCTTCTTTTACAATGAGTATAAAACAGTGTTCTCGGAATAACGGGA GGGAGGGTGCTTTCCTTGTGAAATGCCCTTATCTGGACTACCTGTATCTTGGGGGACTTT TATATATTCCTGTGTTCAAAAGCCACAGCTCTCCTGTTGGTTCATCTTTGAATGTGCTAT ATACATGAAGGCTTTTGCAATTAAAAATGACATTTGGCCACATCCAAGAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 814-929, - strand, RNAz p=0.59847 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 814-929, - strand, RNAz p=0.59847 |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 1-310, gnl|bosTau2|chr14 (40008493-40008178) | |
| 1-310, gnl|Hg17|chr8 (98857218-98857512) | |
| 1-310, gnl|Mm7|chr15 (34347107-34347372) | |
| 495-619, gnl|bosTau2|chr14 (39975532-39975408) | |
| 495-619, gnl|canFam2|chr13 (3087839-3087995) | |
| 495-619, gnl|danRer3|chr19 (48517928-48517795) | |
| 495-619, gnl|dasNov1|scaffold_115563 (4192-4069) | |
| 495-619, gnl|echTel1|scaffold_211248 (2090-2237) | |
| 495-619, gnl|fr1|chrUn (118523158-118523296) | |
| 495-619, gnl|hg17|chr8 (98897449-98897613) | |
| 495-619, gnl|Hg17|chr8 (98897460-98897584) | |
| 495-619, gnl|loxAfr1|scaffold_1326 (66833-66678) | |
| 495-619, gnl|mm7|chr15 (34382165-34382318) | |
| 495-619, gnl|Mm7|chr15 (34382176-34382300) | |
| 495-619, gnl|monDom2|scaffold_3 (66878219-66878055) | |
| 495-619, gnl|oryCun1|scaffold_175401 (19530-19376) | |
| 495-619, gnl|panTro1|chr7_random (42820142-42820306) | |
| 495-619, gnl|rheMac2|chr8 (100352576-100352740) | |
| 495-619, gnl|rn3|chr7 (69706215-69706371) | |
| 495-619, gnl|tetNig1|chrUn_random (90600086-90600237) | |
| 814-1148, gnl|bosTau2|chr14 (39947999-39947668) | |
| 814-1148, gnl|canFam2|chr13 (3126655-3127343) | |
| 814-1148, gnl|dasNov1|scaffold_108622 (1529-897) | |
| 814-1148, gnl|echTel1|scaffold_102820 (6998-6353) | |
| 814-1148, gnl|hg17|chr8 (98932801-98933451) | |
| 814-1148, gnl|Hg17|chr8 (98932800-98933130) | |
| 814-1148, gnl|loxAfr1|scaffold_1326 (43015-42371) | |
| 814-1148, gnl|mm7|chr15 (34392250-34392813) | |
| 814-1148, gnl|Mm7|chr15 (34392249-34392533) | |
| 814-1148, gnl|monDom2|scaffold_3 (66827172-66826429) | |
| 814-1148, gnl|oryCun1|scaffold_172649 (25165-24552) | |
| 814-1148, gnl|panTro1|chr7_random (42855557-42856207) | |
| 814-1148, gnl|rheMac2|chr8 (100389039-100389705) | |
| 814-1148, gnl|rn3|chr7 (69717527-69718128) | |
| 1162-1970, gnl|bosTau2|chr14 (39947605-39946798) | |
| 1162-1970, gnl|canFam2|chr13 (3127296-3127752) | |
| 1162-1970, gnl|dasNov1|scaffold_115563 (3273-2842) | |
| 1162-1970, gnl|echTel1|scaffold_102820 (6403-6030) | |
| 1162-1970, gnl|hg17|chr3 (73017067-73017575) | |
| 1162-1970, gnl|Hg17|chr8 (98933187-98934007) | |
| 1162-1970, gnl|loxAfr1|scaffold_1326 (42418-41938) | |
| 1162-1970, gnl|mm7|chr17 (15080942-15081337) | |
| 1162-1970, gnl|oryCun1|scaffold_172649 (24599-24178) | |
| 1162-1970, gnl|panTro1|chr2 (74987288-74987796) | |
| 1162-1970, gnl|rheMac2|chr2 (63329659-63329151) | |
| 1162-1970, gnl|rn3|chr7 (69718083-69718491) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-310, gnl|bosTau2|chr14 (40008493-40008178) | |
| 1-310, gnl|Hg17|chr8 (98857218-98857512) | |
| 1-310, gnl|Mm7|chr15 (34347107-34347372) | |
| 495-619, gnl|bosTau2|chr14 (39975532-39975408) | |
| 495-619, gnl|canFam2|chr13 (3087839-3087995) | |
| 495-619, gnl|danRer3|chr19 (48517928-48517795) | |
| 495-619, gnl|dasNov1|scaffold_115563 (4192-4069) | |
| 495-619, gnl|echTel1|scaffold_211248 (2090-2237) | |
| 495-619, gnl|fr1|chrUn (118523158-118523296) | |
| 495-619, gnl|hg17|chr8 (98897449-98897613) | |
| 495-619, gnl|Hg17|chr8 (98897460-98897584) | |
| 495-619, gnl|loxAfr1|scaffold_1326 (66833-66678) | |
| 495-619, gnl|mm7|chr15 (34382165-34382318) | |
| 495-619, gnl|Mm7|chr15 (34382176-34382300) | |
| 495-619, gnl|monDom2|scaffold_3 (66878219-66878055) | |
| 495-619, gnl|oryCun1|scaffold_175401 (19530-19376) | |
| 495-619, gnl|panTro1|chr7_random (42820142-42820306) | |
| 495-619, gnl|rheMac2|chr8 (100352576-100352740) | |
| 495-619, gnl|rn3|chr7 (69706215-69706371) | |
| 495-619, gnl|tetNig1|chrUn_random (90600086-90600237) | |
| 814-1148, gnl|bosTau2|chr14 (39947999-39947668) | |
| 814-1148, gnl|canFam2|chr13 (3126655-3127343) | |
| 814-1148, gnl|dasNov1|scaffold_108622 (1529-897) | |
| 814-1148, gnl|echTel1|scaffold_102820 (6998-6353) | |
| 814-1148, gnl|hg17|chr8 (98932801-98933451) | |
| 814-1148, gnl|Hg17|chr8 (98932800-98933130) | |
| 814-1148, gnl|loxAfr1|scaffold_1326 (43015-42371) | |
| 814-1148, gnl|mm7|chr15 (34392250-34392813) | |
| 814-1148, gnl|Mm7|chr15 (34392249-34392533) | |
| 814-1148, gnl|monDom2|scaffold_3 (66827172-66826429) | |
| 814-1148, gnl|oryCun1|scaffold_172649 (25165-24552) | |
| 814-1148, gnl|panTro1|chr7_random (42855557-42856207) | |
| 814-1148, gnl|rheMac2|chr8 (100389039-100389705) | |
| 814-1148, gnl|rn3|chr7 (69717527-69718128) | |
| 1162-1970, gnl|bosTau2|chr14 (39947605-39946798) | |
| 1162-1970, gnl|canFam2|chr13 (3127296-3127752) | |
| 1162-1970, gnl|dasNov1|scaffold_115563 (3273-2842) | |
| 1162-1970, gnl|echTel1|scaffold_102820 (6403-6030) | |
| 1162-1970, gnl|hg17|chr3 (73017067-73017575) | |
| 1162-1970, gnl|Hg17|chr8 (98933187-98934007) | |
| 1162-1970, gnl|loxAfr1|scaffold_1326 (42418-41938) | |
| 1162-1970, gnl|mm7|chr17 (15080942-15081337) | |
| 1162-1970, gnl|oryCun1|scaffold_172649 (24599-24178) | |
| 1162-1970, gnl|panTro1|chr2 (74987288-74987796) | |
| 1162-1970, gnl|rheMac2|chr2 (63329659-63329151) | |
| 1162-1970, gnl|rn3|chr7 (69718083-69718491) |
| Expressed library(ies): 40 entry(ies) | More info |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
| nje (0.66368) | |
| fhi (0.508733) | |
| jej (0.494609) | |
| pty (0.428143) | |
| cov (0.396458) | |
| ova (0.387397) | |
| ton (0.351) | |
| fbs (0.350693) | |
| cty (0.31224) | |
| cli (0.305623) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| fce (0.271592) | |
| cly (0.241284) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| cbl (0.229595) | |
| nlu (0.191681) | |
| sin (0.174948) | |
| duo (0.172801) | |
| eye (0.170503) | |
| cje (0.165235) | |
| cki (0.165235) | |
| nco (0.161734) | |
| fco (0.157208) | |
| cag (0.151194) | |
| spl (0.143184) | |
| csk (0.140746) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| spc (0.113366) |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.66368) | |
| fhi (0.508733) | |
| jej (0.494609) | |
| pty (0.428143) | |
| cov (0.396458) | |
| ova (0.387397) | |
| ton (0.351) | |
| fbs (0.350693) | |
| cty (0.31224) | |
| cli (0.305623) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| fce (0.271592) | |
| cly (0.241284) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| cbl (0.229595) | |
| nlu (0.191681) | |
| sin (0.174948) | |
| duo (0.172801) | |
| eye (0.170503) | |
| cje (0.165235) | |
| cki (0.165235) | |
| nco (0.161734) | |
| fco (0.157208) | |
| cag (0.151194) | |
| spl (0.143184) | |
| csk (0.140746) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| spc (0.113366) |