Ss1.1-Ova1-OVR010020F10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTAGCCTGTTGCAGCGGTCTGGGAGCTTTCGGGTAAGAATGGCGCCGGAAGGGAAGAACA AGCGGAAGAAAAAGCAGAGCGCGCAGGAGGGAGAGAACGTGGACGGCGGCAGTCGTGGGA ATCTGGCCGGAGGCTATCTGATTGGACAAGTCGCCAACAGTTTATCCCAAGGCAAGAGGC CCTCCGGAGGCAGCGCCGGCCGGCTGGCTTCCCTCTTCAGCTCTTTGGAGCCTCAGCTTC AACCCCTGTACGTGCCTCTGCCTAAAGAGACCACCAAAAAAAGGAAACAGGATGAGGAGG AAGCACGTTCATCCCAAATTCAAAGACCACTTTTACAAGAACCTGCAAAAACAGTGAAAG TGAAGAAGAAACTTTCTGATGCAGACAAAAAGTTGGCAAACAGAGAAAATGCTTTAGCAA GTGCTGATTTAGAAGAAGAAATTCGCCAGAAACAAGGACAGAAAAGGAAAAATTCTCAAT CTGGTGTTACAATAGCACTTGATGATGTAGATCAGACAGTTGTAAATCCAAGAAGGAAAA TCCAAACCAACAAAGAAGAAGAGAGATTAAAGAATGAGAGAACTGTGTTTGTTGGGAATT TGCCAGTCACCTGTAATAAGAAGAAACTGAAGTCATTTTTTAAAGAGTATGGACAAATAG AATCTGTACGATTTCGTTCTCTGATTCCAGCAGAAGGAACTTTATCCAAAAAGCTGGCAG CAATAAAACGTAAAATTCATCCAGATCAGAAAAATATTAATGCTTACGTTGTGTTTAAGG ATGAGAGTGCTGCTGCAAAAGCATTGGAAAGAAATGGGGCCCAAATTGCAGATGGATTTC GTATTAGAGTGGATCTTGCATCTGAGACCTCATCTAGGGACAAGAGATCAGTGTTCGTGG GGAATCTCCCATACAAAGTTGAAGAATCTGCTGTTGAGAAACACTTTCTGGACTGTGGGA GCGTTGTGGCTGTAAGGATCGTGCGAGATCCAGTGACAGGAGTTGGCAGAGGGTTTGGCT ACGTGCTCTTTGAGAATACAGATGCTGTTCATCTTGCTCTGAAATTAAATAATTCTGAAC TGATGGGAAGAAAACTGAGAGTCATGCGTTCCATTCATAAAGAAAAATTAAAACAAAATT CAAATCCTGGTTTGAAGAATGTCAATAAATCTAAGGATGGACTTAATTTTCCTTCAAAAA ATGTGCAACGTTCTAAAAGTTTATATGTTGGAGAAAAAGCTGTTCTTATTAAGAAGAAAA AGAAAGGACAGAAGAAAAGTGGACGATTTAAGAGACAGAAAAATCAGAAGTAGCAATGTG AAGCTTTTTTTTTTCCACTGACTATTGGATAATAAAAAAGTGTGGATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTAGCCTGTTGCAGCGGTCTGGGAGCTTTCGGGTAAGAATGGCGCCGGAAGGGAAGAACA AGCGGAAGAAAAAGCAGAGCGCGCAGGAGGGAGAGAACGTGGACGGCGGCAGTCGTGGGA ATCTGGCCGGAGGCTATCTGATTGGACAAGTCGCCAACAGTTTATCCCAAGGCAAGAGGC CCTCCGGAGGCAGCGCCGGCCGGCTGGCTTCCCTCTTCAGCTCTTTGGAGCCTCAGCTTC AACCCCTGTACGTGCCTCTGCCTAAAGAGACCACCAAAAAAAGGAAACAGGATGAGGAGG AAGCACGTTCATCCCAAATTCAAAGACCACTTTTACAAGAACCTGCAAAAACAGTGAAAG TGAAGAAGAAACTTTCTGATGCAGACAAAAAGTTGGCAAACAGAGAAAATGCTTTAGCAA GTGCTGATTTAGAAGAAGAAATTCGCCAGAAACAAGGACAGAAAAGGAAAAATTCTCAAT CTGGTGTTACAATAGCACTTGATGATGTAGATCAGACAGTTGTAAATCCAAGAAGGAAAA TCCAAACCAACAAAGAAGAAGAGAGATTAAAGAATGAGAGAACTGTGTTTGTTGGGAATT TGCCAGTCACCTGTAATAAGAAGAAACTGAAGTCATTTTTTAAAGAGTATGGACAAATAG AATCTGTACGATTTCGTTCTCTGATTCCAGCAGAAGGAACTTTATCCAAAAAGCTGGCAG CAATAAAACGTAAAATTCATCCAGATCAGAAAAATATTAATGCTTACGTTGTGTTTAAGG ATGAGAGTGCTGCTGCAAAAGCATTGGAAAGAAATGGGGCCCAAATTGCAGATGGATTTC GTATTAGAGTGGATCTTGCATCTGAGACCTCATCTAGGGACAAGAGATCAGTGTTCGTGG GGAATCTCCCATACAAAGTTGAAGAATCTGCTGTTGAGAAACACTTTCTGGACTGTGGGA GCGTTGTGGCTGTAAGGATCGTGCGAGATCCAGTGACAGGAGTTGGCAGAGGGTTTGGCT ACGTGCTCTTTGAGAATACAGATGCTGTTCATCTTGCTCTGAAATTAAATAATTCTGAAC TGATGGGAAGAAAACTGAGAGTCATGCGTTCCATTCATAAAGAAAAATTAAAACAAAATT CAAATCCTGGTTTGAAGAATGTCAATAAATCTAAGGATGGACTTAATTTTCCTTCAAAAA ATGTGCAACGTTCTAAAAGTTTATATGTTGGAGAAAAAGCTGTTCTTATTAAGAAGAAAA AGAAAGGACAGAAGAAAAGTGGACGATTTAAGAGACAGAAAAATCAGAAGTAGCAATGTG AAGCTTTTTTTTTTCCACTGACTATTGGATAATAAAAAAGTGTGGATA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 91-267, gnl|bosTau2|chr28 (2302620-2302796) | |
| 91-267, gnl|canFam2|chr4 (7753759-7753594) | |
| 91-267, gnl|dasNov1|scaffold_56712 (8311-8146) | |
| 91-267, gnl|echTel1|scaffold_248908 (2890-2725) | |
| 91-267, gnl|hg17|chr1 (231517489-231517655) | |
| 91-267, gnl|Hg17|chr1 (231650424-231650248) | |
| 91-267, gnl|loxAfr1|scaffold_7150 (17759-17924) | |
| 91-267, gnl|mm7|chr8 (125558303-125558466) | |
| 91-267, gnl|Mm7|chr8 (125558493-125558320) | |
| 91-267, gnl|monDom2|scaffold_13 (50664577-50664423) | |
| 91-267, gnl|oryCun1|scaffold_191913 (1560-1725) | |
| 91-267, gnl|panTro1|chr1 (215474717-215474883) | |
| 91-267, gnl|rheMac2|chr1 (221861430-221861264) | |
| 91-267, gnl|rn3|chr19 (56889937-56890100) | |
| 398-623, gnl|bosTau2|chr28 (2307827-2308064) | |
| 398-623, gnl|Hg17|chr1 (231644474-231644237) | |
| 398-623, gnl|Mm7|chr8 (125553214-125552965) | |
| 1033-1362, gnl|bosTau2|chr28 (2947195-2946861) | |
| 1033-1362, gnl|canFam2|chr4 (7778697-7778354) | |
| 1033-1362, gnl|dasNov1|scaffold_51703 (9642-9288) | |
| 1033-1362, gnl|echTel1|scaffold_168789 (6636-6312) | |
| 1033-1362, gnl|galGal2|chrUn (142234558-142234185) | |
| 1033-1362, gnl|hg17|chr1 (231488285-231488644) | |
| 1033-1362, gnl|Hg17|chr1 (231621355-231621006) | |
| 1033-1362, gnl|mm7|chr8 (125536794-125537142) | |
| 1033-1362, gnl|Mm7|chr8 (125537128-125536793) | |
| 1033-1362, gnl|monDom2|scaffold_13 (50680273-50679937) | |
| 1033-1362, gnl|oryCun1|scaffold_142741 (6143-5786) | |
| 1033-1362, gnl|panTro1|chr1 (215445683-215446039) | |
| 1033-1362, gnl|rheMac2|chr1 (221886807-221886446) | |
| 1033-1362, gnl|rn3|chr19 (56871103-56871431) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 91-267, gnl|bosTau2|chr28 (2302620-2302796) | |
| 91-267, gnl|canFam2|chr4 (7753759-7753594) | |
| 91-267, gnl|dasNov1|scaffold_56712 (8311-8146) | |
| 91-267, gnl|echTel1|scaffold_248908 (2890-2725) | |
| 91-267, gnl|hg17|chr1 (231517489-231517655) | |
| 91-267, gnl|Hg17|chr1 (231650424-231650248) | |
| 91-267, gnl|loxAfr1|scaffold_7150 (17759-17924) | |
| 91-267, gnl|mm7|chr8 (125558303-125558466) | |
| 91-267, gnl|Mm7|chr8 (125558493-125558320) | |
| 91-267, gnl|monDom2|scaffold_13 (50664577-50664423) | |
| 91-267, gnl|oryCun1|scaffold_191913 (1560-1725) | |
| 91-267, gnl|panTro1|chr1 (215474717-215474883) | |
| 91-267, gnl|rheMac2|chr1 (221861430-221861264) | |
| 91-267, gnl|rn3|chr19 (56889937-56890100) | |
| 398-623, gnl|bosTau2|chr28 (2307827-2308064) | |
| 398-623, gnl|Hg17|chr1 (231644474-231644237) | |
| 398-623, gnl|Mm7|chr8 (125553214-125552965) | |
| 1033-1362, gnl|bosTau2|chr28 (2947195-2946861) | |
| 1033-1362, gnl|canFam2|chr4 (7778697-7778354) | |
| 1033-1362, gnl|dasNov1|scaffold_51703 (9642-9288) | |
| 1033-1362, gnl|echTel1|scaffold_168789 (6636-6312) | |
| 1033-1362, gnl|galGal2|chrUn (142234558-142234185) | |
| 1033-1362, gnl|hg17|chr1 (231488285-231488644) | |
| 1033-1362, gnl|Hg17|chr1 (231621355-231621006) | |
| 1033-1362, gnl|mm7|chr8 (125536794-125537142) | |
| 1033-1362, gnl|Mm7|chr8 (125537128-125536793) | |
| 1033-1362, gnl|monDom2|scaffold_13 (50680273-50679937) | |
| 1033-1362, gnl|oryCun1|scaffold_142741 (6143-5786) | |
| 1033-1362, gnl|panTro1|chr1 (215445683-215446039) | |
| 1033-1362, gnl|rheMac2|chr1 (221886807-221886446) | |
| 1033-1362, gnl|rn3|chr19 (56871103-56871431) |
| Expressed library(ies): 27 entry(ies) | More info |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
| cte (1.17096) | |
| pan (0.707881) | |
| vin (0.332557) | |
| fco (0.314416) | |
| isp (0.300752) | |
| spl (0.286369) | |
| fce (0.271592) | |
| ste (0.270416) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| ldo (0.194005) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| rec (0.17307) | |
| cut (0.169924) | |
| nco (0.161734) | |
| cag (0.151194) | |
| fat (0.147427) | |
| liv (0.146284) | |
| csk (0.140746) | |
| pla (0.133672) | |
| ret (0.128733) | |
| thg (0.126791) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eep (0.122564) |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (1.17096) | |
| pan (0.707881) | |
| vin (0.332557) | |
| fco (0.314416) | |
| isp (0.300752) | |
| spl (0.286369) | |
| fce (0.271592) | |
| ste (0.270416) | |
| mgp (0.230681) | |
| ece (0.229305) | |
| ldo (0.194005) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| rec (0.17307) | |
| cut (0.169924) | |
| nco (0.161734) | |
| cag (0.151194) | |
| fat (0.147427) | |
| liv (0.146284) | |
| csk (0.140746) | |
| pla (0.133672) | |
| ret (0.128733) | |
| thg (0.126791) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eep (0.122564) |