Non-Coding RNA Search

Ss1.1-Ova1-OVR010020H09.5

Sequence:


               
               GGGCAGCGAAGAGCTTTATGGAGTCAGTATACACTTGGATTAACTTATCCCCAGTACAGA
TCTCTATAGTGAAATGGTTACAGTCTATAAACATGAACATCCAGAGGAAAAGGAAACACA
AACACTCTTCTGAGGAGCACTGTCTTAAACAACCCAAGCTGGGCACCTACGGTTCGCAGC
CCATATCTACACCCAGGTGAAGACGCTCAGGGTTAGGGGATGTCTTGAAGGATGACAAAG
GGGTCCAGAAGGAGGTGAACGGAGGAGCTGCTTCAGGCCAGGGATAAAGCAAGCTTCCTC
TGCCTGGTACCTGGACAAGCAGCATATCACTGAAGCAGCATGCTGAGGCCCAGGTTGCGG
TGCCTCCTTTCCAGCTCCGACACAGCCTGCAGCAGAGACCTGAACCTCTCCGCCGGGTCC
TCATCCTCATCCTCTGGGGATCCTTCTTCTTTCTCTGCTTCCTTCAGGAAGCGCCCTTCC
TCCTCGGCAAAGAAGGCCCGAAGCTTCTTGTAGTCAGTCAAGGCCTTCTTCCTCCGGTCC
ATCACGTGTCCCTTCCACACAGCAGCTGCAGACTCAGCCTGGCCATGCAGGTCACGAGCA
TCATTCAGATCTTTCTTCATGATCTCCACAGACCCCTTGTTCTCCTTGCCGCGCAGCGCC
TTCCTCCAGCGGGGCTCCCACTCGGGCGGCTCGGGCCCCGCGGCCATGCGGCAAGCGGCG
CACAGAGGGCCCCCGTCGGCACGGCACAGGAGCTGCAGCGCCGCCTCAGAGGCCGGACCG
TCGCGCGCGGGCGCCGCGGCCGCCTCCTCCAGTGCCAGGAGGCGGCGGCTGAGCGGCGGA
CGGCCGGGCTCCACCGCGCGCTGCCAGCAGTCGTCGGCGCACTCGGGACACGGGAAGGGC
CCGTCCTCCTCGGCCCAGAATCGCACCACGCACGCCCGGCAGAAGCGATGGCCGCAATCG
GCACGCACTGGCTCGCGGGGCGCGCGCTGGCATAGGGCGCAGGCGGCCTCAGCAGGGCCC
CCGGGAAGCGCCAGGGCGGCGGTGATGGGGCCCTCAAGGAGGGCTCAGACAGAGGCGTGC
ACCGGGGAGTAAGGGTGGCTGGAAGGGCGAGGCCGGAGCAAGGCGGAGACCCGGGGAACC
GGAGGCACGAAGAGAGCGGCCAGAGAGCTGGGGACGGGAGCGCGCGGACGGGGGTACAGA
TCAGGAATAGAAGACAAGAATGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCAGCGAAGAGCTTTATGGAGTCAGTATACACTTGGATTAACTTATCCCCAGTACAGA
TCTCTATAGTGAAATGGTTACAGTCTATAAACATGAACATCCAGAGGAAAAGGAAACACA
AACACTCTTCTGAGGAGCACTGTCTTAAACAACCCAAGCTGGGCACCTACGGTTCGCAGC
CCATATCTACACCCAGGTGAAGACGCTCAGGGTTAGGGGATGTCTTGAAGGATGACAAAG
GGGTCCAGAAGGAGGTGAACGGAGGAGCTGCTTCAGGCCAGGGATAAAGCAAGCTTCCTC
TGCCTGGTACCTGGACAAGCAGCATATCACTGAAGCAGCATGCTGAGGCCCAGGTTGCGG
TGCCTCCTTTCCAGCTCCGACACAGCCTGCAGCAGAGACCTGAACCTCTCCGCCGGGTCC
TCATCCTCATCCTCTGGGGATCCTTCTTCTTTCTCTGCTTCCTTCAGGAAGCGCCCTTCC
TCCTCGGCAAAGAAGGCCCGAAGCTTCTTGTAGTCAGTCAAGGCCTTCTTCCTCCGGTCC
ATCACGTGTCCCTTCCACACAGCAGCTGCAGACTCAGCCTGGCCATGCAGGTCACGAGCA
TCATTCAGATCTTTCTTCATGATCTCCACAGACCCCTTGTTCTCCTTGCCGCGCAGCGCC
TTCCTCCAGCGGGGCTCCCACTCGGGCGGCTCGGGCCCCGCGGCCATGCGGCAAGCGGCG
CACAGAGGGCCCCCGTCGGCACGGCACAGGAGCTGCAGCGCCGCCTCAGAGGCCGGACCG
TCGCGCGCGGGCGCCGCGGCCGCCTCCTCCAGTGCCAGGAGGCGGCGGCTGAGCGGCGGA
CGGCCGGGCTCCACCGCGCGCTGCCAGCAGTCGTCGGCGCACTCGGGACACGGGAAGGGC
CCGTCCTCCTCGGCCCAGAATCGCACCACGCACGCCCGGCAGAAGCGATGGCCGCAATCG
GCACGCACTGGCTCGCGGGGCGCGCGCTGGCATAGGGCGCAGGCGGCCTCAGCAGGGCCC
CCGGGAAGCGCCAGGGCGGCGGTGATGGGGCCCTCAAGGAGGGCTCAGACAGAGGCGTGC
ACCGGGGAGTAAGGGTGGCTGGAAGGGCGAGGCCGGAGCAAGGCGGAGACCCGGGGAACC
GGAGGCACGAAGAGAGCGGCCAGAGAGCTGGGGACGGGAGCGCGCGGACGGGGGTACAGA
TCAGGAATAGAAGACAAGAATGGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q6PJR0_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q6PJR0_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               209-332, - strand, RNAz p=0.992942

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               209-332, - strand, RNAz p=0.992942

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               9-332, gnl|bosTau2|chr7 (2988046-2987724)
               


               
               644-1105, gnl|bosTau2|chr7 (2985170-2984712)
               

               
               644-1105, gnl|Hg17|chr1 (224982315-224981863)
               

               
               644-1105, gnl|Mm7|chr11 (59019939-59020379)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-332, gnl|bosTau2|chr7 (2988046-2987724)
               


               
               644-1105, gnl|bosTau2|chr7 (2985170-2984712)
               

               
               644-1105, gnl|Hg17|chr1 (224982315-224981863)
               

               
               644-1105, gnl|Mm7|chr11 (59019939-59020379)

Expressed library(ies): 22 entry(ies)

More info

Expressed library(ies): 22 entry(ies)

Help | Less info


               
               ebs (0.473205)
               

               
               eye (0.341006)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.473205)
               

               
               eye (0.341006)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               eli (0.151814)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               cly (0.120642)
               

               
               nbm (0.0993246)

	9-332, gnl\|bosTau2\|chr7 (2988046-2987724)

	644-1105, gnl\|bosTau2\|chr7 (2985170-2984712)
	644-1105, gnl\|Hg17\|chr1 (224982315-224981863)
	644-1105, gnl\|Mm7\|chr11 (59019939-59020379)

	ebs (0.473205)
	eye (0.341006)
	fce (0.271592)
	ece (0.229305)
	eje (0.197668)
	col (0.195008)
	ldo (0.194005)
	cmu (0.186393)
	fty (0.17584)
	duo (0.172801)
	fhi (0.169578)
	nje (0.16592)
	cje (0.165235)
	eli (0.151814)
	fat (0.147427)
	spl (0.143184)
	nca (0.136874)
	pla (0.133672)
	nmm (0.132802)
	kid (0.129735)
	cly (0.120642)
	nbm (0.0993246)