Ss1.1-Ova1-OVR010021A06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGACGTGGGCTTGACGAGCCAGCGGCGGGTTTGCCGAGCTCAGGGGCCGGCGGCAGCTG GAGCCGGGGTCGGCCGCAGCCGGAGGGGGCGCGGGGCGGCGTTTGGCCGGGGCCATGACG GGCAATGCCGGGGAGTGGTGCCTCATGGAAAGCGACCCCGGAGTCTTCACCGAGCTCATT AAAGGATTCGGTTGCCGAGGAGCCCAAGTAGAAGAAATATGGAGTTTAGAGCCTGAGAAT TTTGAAAAATTAAAGCCAGTTCATGGGCTGATTTTTCTTTTCAAGTGGCAGCCCGGAGAA GAACCAGCAGGCTCTGTGGTTCAGGACTCCCGACTTGACACGATATTTTTTGCCAAGCAG GTAATTAATAATGCTTGTGCTACTCAAGCCATAGTAAGTGTGTTATTGAACTGTACCCAT CAGGATGTCCATTTAGGAGAGACATTGTCAGAGTTTAAGGAATTCTCACAAAGTTTTGAT GCAGCTATGAAAGGTTTGGCCCTGAGTAATTCGGATGTGATTCGCCAAGTACACAACAGT TTCGCCAGACAGCAAATGTTTGAATTTGATGCAAAGACATCAGCAAAAGAAGAAGATGCT TTTCACTTTGTCAGTTACGTTCCTGTGAATGGAAGACTGTACGAATTAGATGGATTAAGA GAAGGACCGATCGATTTAGGTGCATGCAATCAAGATGACTGGATCAGCGCAGTGAGGCCA GTCATAGAAAAAAGGATACAAAAGTACAGTGAAGGTGAAATTCGATTTAACTTAATGGCC ATTGTGTCTGACAGGAAAATGATATATGAACAGAAGATAGCAGAGTTACAAAGACAGCTT GCTGAGGAACCCATGGATACAGATCAGGGTAGTAACATGTTAAGTGCTATTCAGTCAGAA GTTGCCAAAAATCAGATGCTTATTGAAGAAGAAGTACAGAAATTAAAAAGATATAAGATT GAAAACATCAGAAGGAAGCATAATTATCTGCCTTTCATTATGGAACTGTTAAAGACTTTA GCAGAACACCAGCAGTTAATACCTCTCGTAGAAAAGGCAAAAGAAAAACAGAATGCGAAG AAGGCACAGGAAACCAAATGAAGAACATGCTTTGGGATGTGTACGCATTTCTGCTTCTGC ACTTATTTTCGTGGAATCCATTAGGTATAAAGAACTTTGAGCAACATTGGAATTGACTCT GCACGTTTGGCGGTAGTACCAGTCTGTCTAGTCCATTATTAATGCATGGATTCACAAGCT CTCCCTATCTGCATCCTGTGCATGGAGTGCATTTAAATAAAGGTGATGTTCGGAGTGCTT GCCCCCATTCCATTTTTTGACATTGGATCTGAGAACTCCTGTTGGTTCTCTGCATATATA ATGTACACCATAATGAACCTAGAAAATGAACAAATGATAGTCTCTATCTGTAATGGTTAT GATTAATTTTGCAATCTTTTAGCTTGGTTAAATGCGTAAAATTTATAAATACCAGACCTT GAGTGAACTGAATGTCTTGTTTTCATCATCAATGAGAAAAAATCAGTATTTCTGTGTTTG GTATCTGAATATTTTGAGGATTTCAAAACGATTATCTCCTATATGTCAGTTATTTGGAAA AGCTTGATTTTAATGCAGATCGTTTGAAAAAGAGCAAAAGAATAATTTCTACTGATTTTC ATTGCTACTAGTAGAAAAAGTAATAAACATCCCGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGACGTGGGCTTGACGAGCCAGCGGCGGGTTTGCCGAGCTCAGGGGCCGGCGGCAGCTG GAGCCGGGGTCGGCCGCAGCCGGAGGGGGCGCGGGGCGGCGTTTGGCCGGGGCCATGACG GGCAATGCCGGGGAGTGGTGCCTCATGGAAAGCGACCCCGGAGTCTTCACCGAGCTCATT AAAGGATTCGGTTGCCGAGGAGCCCAAGTAGAAGAAATATGGAGTTTAGAGCCTGAGAAT TTTGAAAAATTAAAGCCAGTTCATGGGCTGATTTTTCTTTTCAAGTGGCAGCCCGGAGAA GAACCAGCAGGCTCTGTGGTTCAGGACTCCCGACTTGACACGATATTTTTTGCCAAGCAG GTAATTAATAATGCTTGTGCTACTCAAGCCATAGTAAGTGTGTTATTGAACTGTACCCAT CAGGATGTCCATTTAGGAGAGACATTGTCAGAGTTTAAGGAATTCTCACAAAGTTTTGAT GCAGCTATGAAAGGTTTGGCCCTGAGTAATTCGGATGTGATTCGCCAAGTACACAACAGT TTCGCCAGACAGCAAATGTTTGAATTTGATGCAAAGACATCAGCAAAAGAAGAAGATGCT TTTCACTTTGTCAGTTACGTTCCTGTGAATGGAAGACTGTACGAATTAGATGGATTAAGA GAAGGACCGATCGATTTAGGTGCATGCAATCAAGATGACTGGATCAGCGCAGTGAGGCCA GTCATAGAAAAAAGGATACAAAAGTACAGTGAAGGTGAAATTCGATTTAACTTAATGGCC ATTGTGTCTGACAGGAAAATGATATATGAACAGAAGATAGCAGAGTTACAAAGACAGCTT GCTGAGGAACCCATGGATACAGATCAGGGTAGTAACATGTTAAGTGCTATTCAGTCAGAA GTTGCCAAAAATCAGATGCTTATTGAAGAAGAAGTACAGAAATTAAAAAGATATAAGATT GAAAACATCAGAAGGAAGCATAATTATCTGCCTTTCATTATGGAACTGTTAAAGACTTTA GCAGAACACCAGCAGTTAATACCTCTCGTAGAAAAGGCAAAAGAAAAACAGAATGCGAAG AAGGCACAGGAAACCAAATGAAGAACATGCTTTGGGATGTGTACGCATTTCTGCTTCTGC ACTTATTTTCGTGGAATCCATTAGGTATAAAGAACTTTGAGCAACATTGGAATTGACTCT GCACGTTTGGCGGTAGTACCAGTCTGTCTAGTCCATTATTAATGCATGGATTCACAAGCT CTCCCTATCTGCATCCTGTGCATGGAGTGCATTTAAATAAAGGTGATGTTCGGAGTGCTT GCCCCCATTCCATTTTTTGACATTGGATCTGAGAACTCCTGTTGGTTCTCTGCATATATA ATGTACACCATAATGAACCTAGAAAATGAACAAATGATAGTCTCTATCTGTAATGGTTAT GATTAATTTTGCAATCTTTTAGCTTGGTTAAATGCGTAAAATTTATAAATACCAGACCTT GAGTGAACTGAATGTCTTGTTTTCATCATCAATGAGAAAAAATCAGTATTTCTGTGTTTG GTATCTGAATATTTTGAGGATTTCAAAACGATTATCTCCTATATGTCAGTTATTTGGAAA AGCTTGATTTTAATGCAGATCGTTTGAAAAAGAGCAAAAGAATAATTTCTACTGATTTTC ATTGCTACTAGTAGAAAAAGTAATAAACATCCCGAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 68 entry(ies) | More info |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
| 1-192, gnl|bosTau2|chr16 (4768462-4768659) | |
| 1-192, gnl|Hg17|chr1 (189760163-189759970) | |
| 1-192, gnl|Mm7|chr1 (143703560-143703759) | |
| 359-490, gnl|bosTau2|chr16 (4794039-4794170) | |
| 359-490, gnl|canFam2|chr17 (38807881-38807966) | |
| 359-490, gnl|canFam2|chr38 (9029117-9029031) | |
| 359-490, gnl|danRer3|chr22 (15503996-15504081) | |
| 359-490, gnl|dasNov1|scaffold_44680 (14750-14836) | |
| 359-490, gnl|dasNov1|scaffold_44680 (14752-14817) | |
| 359-490, gnl|echTel1|scaffold_274607 (13812-13720) | |
| 359-490, gnl|echTel1|scaffold_309269 (21784-21698) | |
| 359-490, gnl|fr1|chrUn (85610893-85610979) | |
| 359-490, gnl|galGal2|chr8 (3455983-3455897) | |
| 359-490, gnl|hg17|chr1 (189730313-189730399) | |
| 359-490, gnl|Hg17|chr1 (189730446-189730315) | |
| 359-490, gnl|hg17|chr2 (111678019-111678108) | |
| 359-490, gnl|loxAfr1|scaffold_2572 (95767-95681) | |
| 359-490, gnl|loxAfr1|scaffold_2572 (95762-95664) | |
| 359-490, gnl|mm7|chr1 (143720691-143720605) | |
| 359-490, gnl|Mm7|chr1 (143720556-143720687) | |
| 359-490, gnl|monDom2|scaffold_16 (50160117-50160203) | |
| 359-490, gnl|monDom2|scaffold_37 (15890790-15890909) | |
| 359-490, gnl|oryCun1|scaffold_82234 (1864-1785) | |
| 359-490, gnl|oryCun1|scaffold_82234 (1871-1768) | |
| 359-490, gnl|panTro1|chr1 (172307063-172307149) | |
| 359-490, gnl|panTro1|chr12 (114808167-114808256) | |
| 359-490, gnl|rheMac2|chr1 (177567628-177567542) | |
| 359-490, gnl|rheMac2|chr13 (110575422-110575511) | |
| 359-490, gnl|rn3|chr13 (57644732-57644646) | |
| 359-490, gnl|rn3|chr13 (57644732-57644635) | |
| 359-490, gnl|tetNig1|chrUn_random (44850239-44850153) | |
| 359-490, gnl|xenTro1|scaffold_349 (704834-704920) | |
| 547-681, gnl|bosTau2|chr16 (4794391-4794525) | |
| 547-681, gnl|canFam2|chr17 (38807709-38807833) | |
| 547-681, gnl|canFam2|chr38 (9029509-9029367) | |
| 547-681, gnl|danRer3|chr22 (15499960-15500095) | |
| 547-681, gnl|dasNov1|scaffold_44680 (13482-13624) | |
| 547-681, gnl|dasNov1|scaffold_44680 (13492-13596) | |
| 547-681, gnl|echTel1|scaffold_274607 (14010-13871) | |
| 547-681, gnl|echTel1|scaffold_274607 (14020-13899) | |
| 547-681, gnl|fr1|chrUn (85610028-85610168) | |
| 547-681, gnl|galGal2|chr8 (3456360-3456220) | |
| 547-681, gnl|hg17|chr1 (189729957-189730099) | |
| 547-681, gnl|Hg17|chr1 (189730098-189729964) | |
| 547-681, gnl|hg17|chr2 (111677834-111677963) | |
| 547-681, gnl|loxAfr1|scaffold_2572 (96441-96299) | |
| 547-681, gnl|loxAfr1|scaffold_2572 (96431-96327) | |
| 547-681, gnl|mm7|chr1 (143721102-143720960) | |
| 547-681, gnl|mm7|chr1 (143721092-143720988) | |
| 547-681, gnl|Mm7|chr1 (143720959-143721093) | |
| 547-681, gnl|monDom2|scaffold_16 (50159755-50159897) | |
| 547-681, gnl|monDom2|scaffold_37 (15890594-15890725) | |
| 547-681, gnl|oryCun1|scaffold_82234 (2057-1929) | |
| 547-681, gnl|oryCun1|scaffold_82234 (2079-1952) | |
| 547-681, gnl|panTro1|chr1 (172306707-172306849) | |
| 547-681, gnl|panTro1|chr12 (114807982-114808111) | |
| 547-681, gnl|rheMac2|chr1 (177567984-177567842) | |
| 547-681, gnl|rheMac2|chr13 (110575236-110575366) | |
| 547-681, gnl|rn3|chr13 (57645139-57644997) | |
| 547-681, gnl|rn3|chr13 (57645129-57645025) | |
| 547-681, gnl|tetNig1|chrUn_random (44851421-44851287) | |
| 547-681, gnl|xenTro1|scaffold_349 (700326-700464) | |
| 844-957, gnl|bosTau2|chr16 (4801513-4801626) | |
| 844-957, gnl|Hg17|chr1 (189723826-189723713) | |
| 844-957, gnl|Mm7|chr1 (143726202-143726315) | |
| 1055-1716, gnl|bosTau2|chr16 (4809330-4809994) | |
| 1055-1716, gnl|Hg17|chr1 (189717184-189716560) | |
| 1055-1716, gnl|Mm7|chr1 (143732963-143733572) |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-192, gnl|bosTau2|chr16 (4768462-4768659) | |
| 1-192, gnl|Hg17|chr1 (189760163-189759970) | |
| 1-192, gnl|Mm7|chr1 (143703560-143703759) | |
| 359-490, gnl|bosTau2|chr16 (4794039-4794170) | |
| 359-490, gnl|canFam2|chr17 (38807881-38807966) | |
| 359-490, gnl|canFam2|chr38 (9029117-9029031) | |
| 359-490, gnl|danRer3|chr22 (15503996-15504081) | |
| 359-490, gnl|dasNov1|scaffold_44680 (14750-14836) | |
| 359-490, gnl|dasNov1|scaffold_44680 (14752-14817) | |
| 359-490, gnl|echTel1|scaffold_274607 (13812-13720) | |
| 359-490, gnl|echTel1|scaffold_309269 (21784-21698) | |
| 359-490, gnl|fr1|chrUn (85610893-85610979) | |
| 359-490, gnl|galGal2|chr8 (3455983-3455897) | |
| 359-490, gnl|hg17|chr1 (189730313-189730399) | |
| 359-490, gnl|Hg17|chr1 (189730446-189730315) | |
| 359-490, gnl|hg17|chr2 (111678019-111678108) | |
| 359-490, gnl|loxAfr1|scaffold_2572 (95767-95681) | |
| 359-490, gnl|loxAfr1|scaffold_2572 (95762-95664) | |
| 359-490, gnl|mm7|chr1 (143720691-143720605) | |
| 359-490, gnl|Mm7|chr1 (143720556-143720687) | |
| 359-490, gnl|monDom2|scaffold_16 (50160117-50160203) | |
| 359-490, gnl|monDom2|scaffold_37 (15890790-15890909) | |
| 359-490, gnl|oryCun1|scaffold_82234 (1864-1785) | |
| 359-490, gnl|oryCun1|scaffold_82234 (1871-1768) | |
| 359-490, gnl|panTro1|chr1 (172307063-172307149) | |
| 359-490, gnl|panTro1|chr12 (114808167-114808256) | |
| 359-490, gnl|rheMac2|chr1 (177567628-177567542) | |
| 359-490, gnl|rheMac2|chr13 (110575422-110575511) | |
| 359-490, gnl|rn3|chr13 (57644732-57644646) | |
| 359-490, gnl|rn3|chr13 (57644732-57644635) | |
| 359-490, gnl|tetNig1|chrUn_random (44850239-44850153) | |
| 359-490, gnl|xenTro1|scaffold_349 (704834-704920) | |
| 547-681, gnl|bosTau2|chr16 (4794391-4794525) | |
| 547-681, gnl|canFam2|chr17 (38807709-38807833) | |
| 547-681, gnl|canFam2|chr38 (9029509-9029367) | |
| 547-681, gnl|danRer3|chr22 (15499960-15500095) | |
| 547-681, gnl|dasNov1|scaffold_44680 (13482-13624) | |
| 547-681, gnl|dasNov1|scaffold_44680 (13492-13596) | |
| 547-681, gnl|echTel1|scaffold_274607 (14010-13871) | |
| 547-681, gnl|echTel1|scaffold_274607 (14020-13899) | |
| 547-681, gnl|fr1|chrUn (85610028-85610168) | |
| 547-681, gnl|galGal2|chr8 (3456360-3456220) | |
| 547-681, gnl|hg17|chr1 (189729957-189730099) | |
| 547-681, gnl|Hg17|chr1 (189730098-189729964) | |
| 547-681, gnl|hg17|chr2 (111677834-111677963) | |
| 547-681, gnl|loxAfr1|scaffold_2572 (96441-96299) | |
| 547-681, gnl|loxAfr1|scaffold_2572 (96431-96327) | |
| 547-681, gnl|mm7|chr1 (143721102-143720960) | |
| 547-681, gnl|mm7|chr1 (143721092-143720988) | |
| 547-681, gnl|Mm7|chr1 (143720959-143721093) | |
| 547-681, gnl|monDom2|scaffold_16 (50159755-50159897) | |
| 547-681, gnl|monDom2|scaffold_37 (15890594-15890725) | |
| 547-681, gnl|oryCun1|scaffold_82234 (2057-1929) | |
| 547-681, gnl|oryCun1|scaffold_82234 (2079-1952) | |
| 547-681, gnl|panTro1|chr1 (172306707-172306849) | |
| 547-681, gnl|panTro1|chr12 (114807982-114808111) | |
| 547-681, gnl|rheMac2|chr1 (177567984-177567842) | |
| 547-681, gnl|rheMac2|chr13 (110575236-110575366) | |
| 547-681, gnl|rn3|chr13 (57645139-57644997) | |
| 547-681, gnl|rn3|chr13 (57645129-57645025) | |
| 547-681, gnl|tetNig1|chrUn_random (44851421-44851287) | |
| 547-681, gnl|xenTro1|scaffold_349 (700326-700464) | |
| 844-957, gnl|bosTau2|chr16 (4801513-4801626) | |
| 844-957, gnl|Hg17|chr1 (189723826-189723713) | |
| 844-957, gnl|Mm7|chr1 (143726202-143726315) | |
| 1055-1716, gnl|bosTau2|chr16 (4809330-4809994) | |
| 1055-1716, gnl|Hg17|chr1 (189717184-189716560) | |
| 1055-1716, gnl|Mm7|chr1 (143732963-143733572) |
| Expressed library(ies): 40 entry(ies) | More info |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
| lin (1.31043) | |
| isp (0.902256) | |
| thg (0.760746) | |
| bfe (0.749288) | |
| fco (0.628832) | |
| lyg (0.532411) | |
| pro (0.512033) | |
| cbe (0.478469) | |
| tbr (0.462535) | |
| fcc (0.39557) | |
| ldo (0.38801) | |
| sag (0.36543) | |
| pgl (0.35545) | |
| mga (0.32041) | |
| fat (0.294855) | |
| cte (0.29274) | |
| liv (0.292569) | |
| pty (0.285429) | |
| hlv (0.278513) | |
| ova (0.258264) | |
| ret (0.257467) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| gul (0.177588) | |
| mcp (0.170648) | |
| lun (0.150489) | |
| ski (0.146735) | |
| spl (0.143184) | |
| nca (0.136874) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (1.31043) | |
| isp (0.902256) | |
| thg (0.760746) | |
| bfe (0.749288) | |
| fco (0.628832) | |
| lyg (0.532411) | |
| pro (0.512033) | |
| cbe (0.478469) | |
| tbr (0.462535) | |
| fcc (0.39557) | |
| ldo (0.38801) | |
| sag (0.36543) | |
| pgl (0.35545) | |
| mga (0.32041) | |
| fat (0.294855) | |
| cte (0.29274) | |
| liv (0.292569) | |
| pty (0.285429) | |
| hlv (0.278513) | |
| ova (0.258264) | |
| ret (0.257467) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| gul (0.177588) | |
| mcp (0.170648) | |
| lun (0.150489) | |
| ski (0.146735) | |
| spl (0.143184) | |
| nca (0.136874) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) |