Non-Coding RNA Search

Ss1.1-Ova1-OVR010021A09.5

Sequence:


               
               GCCCGCCTGCCTGCGCCCGCGCCGAAGAGGTGCGCGAGCCTCGGCCGCCCGCACAGCGCA
CACTGTCCGGCGCCCGCTCCCCGAGAAACGGCGCGATGACCGCCGAAGAGACTAAGACCG
CCGAGAATGGGGCGCAGTCGGCGCCGCTGCCCCTCGAGGGGGTGGACATCAGCCCCAAGC
AGGATGAAGGCGTGCTTAAGGTCATCAAGCGAGAGGGCACAGGCACAGAGATGCCCATGA
TCGGGGACCGAGTCTCTGTCCACTACACAGGCTGGCTACTAGATGGCACCAAGTTTGACT
CCAGCCTGGACCGCAAGGACAAATTCTCCTTCGACCTGGGGAAAGGAGAGGTCATCAAGG
CTTGGGATATTGCTGTAGCAACCATGAAAGTGGGGGAAGTGTGCCACATCACCTGCAAAC
CAGAATATGCCTACGGTTCAGCCGGCAGTCCTCCCAAGATACCTCCCAATGCCACGCTTG
TGTTTGAGGTGGAGTTGTTCGAGTTCAAGGGAGAGGACCTGACAGAAGAGGAAGACGGTG
GGATCATCAGGAGAATACAGACCCGGGGGGAAGGCTATGCCAGGCCCAACGATGGTGCCA
TTGTGGAGGTTGCCCTGGAAGGGTACTACAAGGACCAGATCTTTGACCGGCGGGAGATCC
GCTTTGAGGTCGGCGAAGGGGAGACTATGGACTTGCCTTGTGGGCTGGAGAAAGCCATTC
AGCGCATGGAAAAAGGAGAGCATTCCATTGTGTACCTCAAACCCAGCTATGCGTTCGGCA
GTGCTGGGAAGGAAAAGTTCCACATCCCACCTAATGCTGAGTTGAAGTATGAAGTACACC
TCAAGAGTTTTGAGAAGGCCAAGGAGTCGTGGGAGATGAGCTCAGAGGAGAAGCTGGAGC
AGAGCACCATTGTGAAGGAGCGGGGCACTGTATACTTCAAGGAAGGCAAGTACAAGCAAG
CTCTGGTGCAGTACAAGAAGATTGTGTCCTGGCTAGAATATGAGTCGAGTTTCTCTAACG
AGGACGCACAGAAGGCACAGGCTCTTCGGCTGGCCTCCCACCTCAACCTAGCCATGTGTT
ATCTGAAACTACAGTCCTTCTCGGCTGCCATTGAAAACTGTAACAAGGCCCTGGAGCTGG
ACAGCAACAACGAGAAGGGCCTTTTCCGCCGGGGAGAGGCCCACCTGGCAGTGAATGACT
TTGACTTGGCTCGAGCTGACTTCCAGAAGGTCCTGCAGCTCTATCCCAGCAACAAAGCCG
CCAAGGCCCAGTTGGCGCTCTGCCAGCAGCGGATCCGTAAGCAGCTTGCGCGGGAGAAGA
AGCTCTATGCCAACATGTTTGAGAGGCTGGCAGAGGAGGAGAGCAAGGCCAAGGTGTCAG
GAGACCAGCAGGCAGACACAGAGATGAAGGAGGAGCAGAAGAATGATGTGGCAGGGCGCC
AGCCTCAGGTGGAGGCGGAAGCATAGCCTCTCCCCAGCCCTGCTCCTGCAGCTGCCTGCC
TCCCCTGCTCCCTACCCTACTCCACCCTGTTAGTTTTGTAAAAACTGAAGAATTTTGAGT
GAATTAGACCTTTATTTTTCTATCTGGTTGGATGGTGGCTTTGGGGGAAGGGGGGGAGGA
GCAGGCTGGGGGATTGAGGTGGGGGGGTGGTCTTTTCAGGTGGTGTCACCCCCTCTTCCC
TTCCCCCTTTATACGCACACTCATCAGAATGTTAATTTATTTTGCTTCCTCTGTTTGTTA
TGTCCATTTTTGAAATGGTAGAAGGGGCAAGTGGTAGGGATGTAAGGTCTGATGTGAAAG
CAGGGTGGAGAGGGAGACCCTTGGGCAGCCCCCTTCCTCACCCTTTCCTCTTCCCACGTG
GGTGCTAGGGGCATGGGGAAAACCACTGCTGTGCCCGTTACCTCTCTGCTCCCCTCCTCA
CCCCAGGCGGTGTGGCTGATGTGTCTCCTGGTGTCACGGTGACCACCCTGTGTACCCTCT
CCAGCATCTCCCCACCTTTCAGTTCCCCTTCTCAGCGGGGTCATGTCCCCACCCCCTCAG
CCTCTTCTCTGCACGTTGCTGAAGGTCCAGGCTCGCCTCAAGTTCTGTGCTTGAGCAATA
AAGTGGAAACAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCGCCTGCCTGCGCCCGCGCCGAAGAGGTGCGCGAGCCTCGGCCGCCCGCACAGCGCA
CACTGTCCGGCGCCCGCTCCCCGAGAAACGGCGCGATGACCGCCGAAGAGACTAAGACCG
CCGAGAATGGGGCGCAGTCGGCGCCGCTGCCCCTCGAGGGGGTGGACATCAGCCCCAAGC
AGGATGAAGGCGTGCTTAAGGTCATCAAGCGAGAGGGCACAGGCACAGAGATGCCCATGA
TCGGGGACCGAGTCTCTGTCCACTACACAGGCTGGCTACTAGATGGCACCAAGTTTGACT
CCAGCCTGGACCGCAAGGACAAATTCTCCTTCGACCTGGGGAAAGGAGAGGTCATCAAGG
CTTGGGATATTGCTGTAGCAACCATGAAAGTGGGGGAAGTGTGCCACATCACCTGCAAAC
CAGAATATGCCTACGGTTCAGCCGGCAGTCCTCCCAAGATACCTCCCAATGCCACGCTTG
TGTTTGAGGTGGAGTTGTTCGAGTTCAAGGGAGAGGACCTGACAGAAGAGGAAGACGGTG
GGATCATCAGGAGAATACAGACCCGGGGGGAAGGCTATGCCAGGCCCAACGATGGTGCCA
TTGTGGAGGTTGCCCTGGAAGGGTACTACAAGGACCAGATCTTTGACCGGCGGGAGATCC
GCTTTGAGGTCGGCGAAGGGGAGACTATGGACTTGCCTTGTGGGCTGGAGAAAGCCATTC
AGCGCATGGAAAAAGGAGAGCATTCCATTGTGTACCTCAAACCCAGCTATGCGTTCGGCA
GTGCTGGGAAGGAAAAGTTCCACATCCCACCTAATGCTGAGTTGAAGTATGAAGTACACC
TCAAGAGTTTTGAGAAGGCCAAGGAGTCGTGGGAGATGAGCTCAGAGGAGAAGCTGGAGC
AGAGCACCATTGTGAAGGAGCGGGGCACTGTATACTTCAAGGAAGGCAAGTACAAGCAAG
CTCTGGTGCAGTACAAGAAGATTGTGTCCTGGCTAGAATATGAGTCGAGTTTCTCTAACG
AGGACGCACAGAAGGCACAGGCTCTTCGGCTGGCCTCCCACCTCAACCTAGCCATGTGTT
ATCTGAAACTACAGTCCTTCTCGGCTGCCATTGAAAACTGTAACAAGGCCCTGGAGCTGG
ACAGCAACAACGAGAAGGGCCTTTTCCGCCGGGGAGAGGCCCACCTGGCAGTGAATGACT
TTGACTTGGCTCGAGCTGACTTCCAGAAGGTCCTGCAGCTCTATCCCAGCAACAAAGCCG
CCAAGGCCCAGTTGGCGCTCTGCCAGCAGCGGATCCGTAAGCAGCTTGCGCGGGAGAAGA
AGCTCTATGCCAACATGTTTGAGAGGCTGGCAGAGGAGGAGAGCAAGGCCAAGGTGTCAG
GAGACCAGCAGGCAGACACAGAGATGAAGGAGGAGCAGAAGAATGATGTGGCAGGGCGCC
AGCCTCAGGTGGAGGCGGAAGCATAGCCTCTCCCCAGCCCTGCTCCTGCAGCTGCCTGCC
TCCCCTGCTCCCTACCCTACTCCACCCTGTTAGTTTTGTAAAAACTGAAGAATTTTGAGT
GAATTAGACCTTTATTTTTCTATCTGGTTGGATGGTGGCTTTGGGGGAAGGGGGGGAGGA
GCAGGCTGGGGGATTGAGGTGGGGGGGTGGTCTTTTCAGGTGGTGTCACCCCCTCTTCCC
TTCCCCCTTTATACGCACACTCATCAGAATGTTAATTTATTTTGCTTCCTCTGTTTGTTA
TGTCCATTTTTGAAATGGTAGAAGGGGCAAGTGGTAGGGATGTAAGGTCTGATGTGAAAG
CAGGGTGGAGAGGGAGACCCTTGGGCAGCCCCCTTCCTCACCCTTTCCTCTTCCCACGTG
GGTGCTAGGGGCATGGGGAAAACCACTGCTGTGCCCGTTACCTCTCTGCTCCCCTCCTCA
CCCCAGGCGGTGTGGCTGATGTGTCTCCTGGTGTCACGGTGACCACCCTGTGTACCCTCT
CCAGCATCTCCCCACCTTTCAGTTCCCCTTCTCAGCGGGGTCATGTCCCCACCCCCTCAG
CCTCTTCTCTGCACGTTGCTGAAGGTCCAGGCTCGCCTCAAGTTCTGTGCTTGAGCAATA
AAGTGGAAACAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57106584|ref|XP_534923.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57106584|ref|XP_534923.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               69-992, gnl|bosTau2|chr14 (24754538-24753618)
               

               
               69-992, gnl|Hg17|chr9 (41693110-41693984)
               

               
               69-992, gnl|Mm7|chr6 (128461749-128456491)
               


               
               1223-1552, gnl|bosTau2|chr4 (20579180-20579510)
               

               
               1223-1552, gnl|Hg17|chr9_random (965577-965245)
               

               
               1223-1552, gnl|Mm7|chr6 (128455805-128453932)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               69-992, gnl|bosTau2|chr14 (24754538-24753618)
               

               
               69-992, gnl|Hg17|chr9 (41693110-41693984)
               

               
               69-992, gnl|Mm7|chr6 (128461749-128456491)
               


               
               1223-1552, gnl|bosTau2|chr4 (20579180-20579510)
               

               
               1223-1552, gnl|Hg17|chr9_random (965577-965245)
               

               
               1223-1552, gnl|Mm7|chr6 (128455805-128453932)

Expressed library(ies): 24 entry(ies)

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Expressed library(ies): 24 entry(ies)

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               fce (0.814775)
               

               
               cag (0.755972)
               

               
               ute (0.398353)
               

               
               fty (0.351679)
               

               
               fbs (0.350693)
               

               
               jca (0.34188)
               

               
               csp (0.322373)
               

               
               cly (0.241284)
               

               
               ecc (0.23007)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               cje (0.165235)
               

               
               eli (0.151814)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.814775)
               

               
               cag (0.755972)
               

               
               ute (0.398353)
               

               
               fty (0.351679)
               

               
               fbs (0.350693)
               

               
               jca (0.34188)
               

               
               csp (0.322373)
               

               
               cly (0.241284)
               

               
               ecc (0.23007)
               

               
               eje (0.197668)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               cje (0.165235)
               

               
               eli (0.151814)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

	69-992, gnl\|bosTau2\|chr14 (24754538-24753618)
	69-992, gnl\|Hg17\|chr9 (41693110-41693984)
	69-992, gnl\|Mm7\|chr6 (128461749-128456491)

	1223-1552, gnl\|bosTau2\|chr4 (20579180-20579510)
	1223-1552, gnl\|Hg17\|chr9_random (965577-965245)
	1223-1552, gnl\|Mm7\|chr6 (128455805-128453932)

	fce (0.814775)
	cag (0.755972)
	ute (0.398353)
	fty (0.351679)
	fbs (0.350693)
	jca (0.34188)
	csp (0.322373)
	cly (0.241284)
	ecc (0.23007)
	eje (0.197668)
	col (0.195008)
	nep (0.183925)
	ill (0.175593)
	ton (0.1755)
	duo (0.172801)
	cje (0.165235)
	eli (0.151814)
	csk (0.140746)
	ssp (0.13552)
	nmm (0.132802)
	cov (0.132153)
	clu (0.119646)
	ebs (0.118301)
	med (0.116252)