Ss1.1-Ova1-OVR010021C02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGGGCTCAGACGTGATAACACTCCTGGTTCCCCATTCCCCGTAGGAGCTGGCGTGAGGG CTGCCTGCTGCTTCCCCTCCATTAGCCACAGCTATTGGATTTGCCACCCAGAATCTTTAG GTAAATGAGATCATGATTCTGGAAGGAAGTGGTGTAATGAATCTCAACCCCAGCAACAAC CTCCTCCACCAGCCGCCGGCCTGGACAGACAGCTACCCCACGTGCAATGTTTCCAGCGGG TTTTTTGGAGGCCAGTGGCATGAAATCCATCCTCAGTACTGGACCAAGTACCAGGTGTGG GAGTGGCTCCAGCACCTCCTGGACACCAACCAGCTGGACGCCAGCTGCATCCCTTTCCAG GAGTTTGACATCAATGGCGAACACCTCTGCAGCATGAGTCTGCAGGAGTTCACCCGGGCG GCGGGGACGGCGGGGCAGCTCCTCTACAGCAACTTGCAGCATCTCAAGTGGAATGGCCAG TGCAGCAGTGACCTGTTCCAGTCCACACACAACGTCATTGTCAAGACGGAACAAACCGAC CCTACCATCATGAACTCCTGGAAAGAAGAAAACTATTTATTCGACCCCAACTATGGTAGC ACAGTAGATTTGTTGGACAGCAAAACTTTCTGCCGGGCCCAGATCTCCATGACAACTACT GGTCACCTTCCCGTTGCAGAGTCACCTGATATGAAAAAGGAGCAAGATCACCCTACAAAG TCCCACACCAAAAAGCACAATCCTCGAGGGACTCACTTATGGGAATTCATTCGAGACATT CTCCTGAACCCAGACAAGAATCCGGGGTTAATCAAGTGGGAAGACCGGTCTGAGGGCATC TTCAGGTTCTTGAAATCAGAGGCCGTGGCACAGCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGGGCTCAGACGTGATAACACTCCTGGTTCCCCATTCCCCGTAGGAGCTGGCGTGAGGG CTGCCTGCTGCTTCCCCTCCATTAGCCACAGCTATTGGATTTGCCACCCAGAATCTTTAG GTAAATGAGATCATGATTCTGGAAGGAAGTGGTGTAATGAATCTCAACCCCAGCAACAAC CTCCTCCACCAGCCGCCGGCCTGGACAGACAGCTACCCCACGTGCAATGTTTCCAGCGGG TTTTTTGGAGGCCAGTGGCATGAAATCCATCCTCAGTACTGGACCAAGTACCAGGTGTGG GAGTGGCTCCAGCACCTCCTGGACACCAACCAGCTGGACGCCAGCTGCATCCCTTTCCAG GAGTTTGACATCAATGGCGAACACCTCTGCAGCATGAGTCTGCAGGAGTTCACCCGGGCG GCGGGGACGGCGGGGCAGCTCCTCTACAGCAACTTGCAGCATCTCAAGTGGAATGGCCAG TGCAGCAGTGACCTGTTCCAGTCCACACACAACGTCATTGTCAAGACGGAACAAACCGAC CCTACCATCATGAACTCCTGGAAAGAAGAAAACTATTTATTCGACCCCAACTATGGTAGC ACAGTAGATTTGTTGGACAGCAAAACTTTCTGCCGGGCCCAGATCTCCATGACAACTACT GGTCACCTTCCCGTTGCAGAGTCACCTGATATGAAAAAGGAGCAAGATCACCCTACAAAG TCCCACACCAAAAAGCACAATCCTCGAGGGACTCACTTATGGGAATTCATTCGAGACATT CTCCTGAACCCAGACAAGAATCCGGGGTTAATCAAGTGGGAAGACCGGTCTGAGGGCATC TTCAGGTTCTTGAAATCAGAGGCCGTGGCACAGCTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 29-129, + strand, RNAz p=0.91095 | |
| 229-427, + strand, RNAz p=0.762572 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 29-129, + strand, RNAz p=0.91095 | |
| 229-427, + strand, RNAz p=0.762572 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 1-129, gnl|bosTau2|chr15 (40454592-40454465) | |
| 1-129, gnl|canFam2|chr18 (36253185-36252794) | |
| 1-129, gnl|dasNov1|scaffold_2764 (76510-76119) | |
| 1-129, gnl|echTel1|scaffold_321493 (74789-74402) | |
| 1-129, gnl|galGal2|chr5 (15694197-15694556) | |
| 1-129, gnl|hg17|chr11 (34598936-34599327) | |
| 1-129, gnl|Hg17|chr11 (34599224-34599351) | |
| 1-129, gnl|loxAfr1|scaffold_11972 (65687-66092) | |
| 1-129, gnl|mm7|chr2 (103154253-103153868) | |
| 1-129, gnl|Mm7|chr2 (103153965-103153842) | |
| 1-129, gnl|monDom2|scaffold_10 (81086553-81086955) | |
| 1-129, gnl|oryCun1|scaffold_214553 (153966-153577) | |
| 1-129, gnl|panTro1|chr9 (34995860-34996251) | |
| 1-129, gnl|rheMac2|chr14 (37203861-37203470) | |
| 1-129, gnl|rn3|chr3 (88453774-88453389) | |
| 229-476, gnl|bosTau2|chr15 (40428577-40428330) | |
| 229-476, gnl|Hg17|chr11 (34624561-34624808) | |
| 229-476, gnl|Mm7|chr2 (103130551-103130304) | |
| 740-875, gnl|bosTau2|chr15 (40415192-40415057) | |
| 740-875, gnl|canFam2|chr18 (36215571-36215348) | |
| 740-875, gnl|danRer3|chr25 (7021406-7021637) | |
| 740-875, gnl|dasNov1|scaffold_18308 (7947-8172) | |
| 740-875, gnl|echTel1|scaffold_91187 (848-621) | |
| 740-875, gnl|fr1|chrUn (165643304-165643089) | |
| 740-875, gnl|galGal2|chr5 (15722293-15722510) | |
| 740-875, gnl|hg17|chr11 (34636638-34636860) | |
| 740-875, gnl|Hg17|chr11 (34636656-34636791) | |
| 740-875, gnl|loxAfr1|scaffold_58106 (13772-13992) | |
| 740-875, gnl|mm7|chr2 (103117971-103117747) | |
| 740-875, gnl|Mm7|chr2 (103117949-103117814) | |
| 740-875, gnl|monDom2|scaffold_10 (81158603-81158825) | |
| 740-875, gnl|oryCun1|scaffold_214553 (114339-114117) | |
| 740-875, gnl|panTro1|chr9 (35033525-35033747) | |
| 740-875, gnl|rheMac2|chr14 (37166160-37165938) | |
| 740-875, gnl|rn3|chr3 (88417027-88416803) | |
| 740-875, gnl|tetNig1|chr13 (5410539-5410754) | |
| 740-875, gnl|xenTro1|scaffold_266 (1438169-1437952) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-129, gnl|bosTau2|chr15 (40454592-40454465) | |
| 1-129, gnl|canFam2|chr18 (36253185-36252794) | |
| 1-129, gnl|dasNov1|scaffold_2764 (76510-76119) | |
| 1-129, gnl|echTel1|scaffold_321493 (74789-74402) | |
| 1-129, gnl|galGal2|chr5 (15694197-15694556) | |
| 1-129, gnl|hg17|chr11 (34598936-34599327) | |
| 1-129, gnl|Hg17|chr11 (34599224-34599351) | |
| 1-129, gnl|loxAfr1|scaffold_11972 (65687-66092) | |
| 1-129, gnl|mm7|chr2 (103154253-103153868) | |
| 1-129, gnl|Mm7|chr2 (103153965-103153842) | |
| 1-129, gnl|monDom2|scaffold_10 (81086553-81086955) | |
| 1-129, gnl|oryCun1|scaffold_214553 (153966-153577) | |
| 1-129, gnl|panTro1|chr9 (34995860-34996251) | |
| 1-129, gnl|rheMac2|chr14 (37203861-37203470) | |
| 1-129, gnl|rn3|chr3 (88453774-88453389) | |
| 229-476, gnl|bosTau2|chr15 (40428577-40428330) | |
| 229-476, gnl|Hg17|chr11 (34624561-34624808) | |
| 229-476, gnl|Mm7|chr2 (103130551-103130304) | |
| 740-875, gnl|bosTau2|chr15 (40415192-40415057) | |
| 740-875, gnl|canFam2|chr18 (36215571-36215348) | |
| 740-875, gnl|danRer3|chr25 (7021406-7021637) | |
| 740-875, gnl|dasNov1|scaffold_18308 (7947-8172) | |
| 740-875, gnl|echTel1|scaffold_91187 (848-621) | |
| 740-875, gnl|fr1|chrUn (165643304-165643089) | |
| 740-875, gnl|galGal2|chr5 (15722293-15722510) | |
| 740-875, gnl|hg17|chr11 (34636638-34636860) | |
| 740-875, gnl|Hg17|chr11 (34636656-34636791) | |
| 740-875, gnl|loxAfr1|scaffold_58106 (13772-13992) | |
| 740-875, gnl|mm7|chr2 (103117971-103117747) | |
| 740-875, gnl|Mm7|chr2 (103117949-103117814) | |
| 740-875, gnl|monDom2|scaffold_10 (81158603-81158825) | |
| 740-875, gnl|oryCun1|scaffold_214553 (114339-114117) | |
| 740-875, gnl|panTro1|chr9 (35033525-35033747) | |
| 740-875, gnl|rheMac2|chr14 (37166160-37165938) | |
| 740-875, gnl|rn3|chr3 (88417027-88416803) | |
| 740-875, gnl|tetNig1|chr13 (5410539-5410754) | |
| 740-875, gnl|xenTro1|scaffold_266 (1438169-1437952) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.170648) | |
| cki (0.165235) |