Ss1.1-Ova1-OVR010021C05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAGCTAGGAGGATCTGCGGCCGCTTCTAGTAGTTTCCAGGCGCTGCCGGGCGGCTGGGA CCGGGCGGTCCTGAGGCTGTGGCTGTGGCTGCTTAGGCGCTGGTGGCGGCGCGATAGGCG AGCCGATGGCTAAGTGGGGTGAGGGCGACCCACGCTGGATCGTGGAGGAGCGGGCGGACG CCACCAACGTCAACAACTGGCATTGGACAGAGAGGGATGCTTCAAATTGGTCCACAGATA AGCTGAAAACACTGTTCCTGGCAGTGCGGGTGCAAAATGAGGAAGGCAAGTGCGAGGTGA CAGAAGTGAATAAGCTTGATGGGGAGGCATCCATTAACAATCGTAAAGGCAAACTTATCT TCTTTTATGAGTGGAGCATCAAACTAAACTGGACAGGTACCTCGAAGTCTGGAGTGCAGT ACAAGGGCCACGTGGACATCCCCAACTTGTCTGATGAAAACAGCGTGGATGAAGTGGAGA TTAGTGTGAGCCTTGCCAAAGATGAGCCTGACACAAATCTCGTGGCCTTAATGAAGGAAG AAGGGGTGAGACTCCTAAGAGAAGCAATGGGAATTTACATCAGCACCCTCAAAACAGAGT TCACGCAGGGTATGATCTTGCCTACAATGAATGGAGAGTCGGTAGACCCAGCCGGGCAGC CAGCACTGAAAACCGAGGAGCGCAAGGCTAAGTCTGCTCCTTCAAAAACCCAGGCCAGAC CTGTTGGTGTCAAAATCCCCACTTGTAAAATCACCCTTAGAGAGACCTTCCTGACATCAC CAGAGGAGCTCTATAGAGTTTTCACCAACCAAGAGCTTGTTCAGGCCTTTACCCACGCTC CTGCGATGTTAGAAGCAGACAAGGGCGGCAAGTTTCACCTGGTCGATGGCAATGTTTCTG GAGAATTCACTGATCTGGTCCCTGAGAAACATATCGTGATGAAGTGGAGGTTTAAATCTT GGCCAGAAGGGCACTTTGCCACCATCACCTTGACCTTCATTGACAAGAACGGAGAGACGG AGCTGTGCATGGAAGGCCGAGGCGTCCCTGCTCCTGAGGAAGAGAGAACGCGGCAGGGCT GGCAGCGGTACTACTTTGAGGGCATCAAACAGACCTTTGGCTACGGCGCACGCTTGTTTT AGGGCCAGCAGCAGGGGCTGCAGCCGCCCATCACTTTGGTCCTCTCTCTCCTGACTGGGC CTGTGACTCACAGGATTGCACCATGCCAGCCACTAACTTGGGGCTGGGGCCCCTTCCCTT CATGTAAACCTTGGTTTGTGCATGTTTTCTGCTGGGTGGGAATAGAGGGTAATTTCTCTT TTATGTGTACATACGCTAAATAAACGTAATTTAAAAAATGTAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAGCTAGGAGGATCTGCGGCCGCTTCTAGTAGTTTCCAGGCGCTGCCGGGCGGCTGGGA CCGGGCGGTCCTGAGGCTGTGGCTGTGGCTGCTTAGGCGCTGGTGGCGGCGCGATAGGCG AGCCGATGGCTAAGTGGGGTGAGGGCGACCCACGCTGGATCGTGGAGGAGCGGGCGGACG CCACCAACGTCAACAACTGGCATTGGACAGAGAGGGATGCTTCAAATTGGTCCACAGATA AGCTGAAAACACTGTTCCTGGCAGTGCGGGTGCAAAATGAGGAAGGCAAGTGCGAGGTGA CAGAAGTGAATAAGCTTGATGGGGAGGCATCCATTAACAATCGTAAAGGCAAACTTATCT TCTTTTATGAGTGGAGCATCAAACTAAACTGGACAGGTACCTCGAAGTCTGGAGTGCAGT ACAAGGGCCACGTGGACATCCCCAACTTGTCTGATGAAAACAGCGTGGATGAAGTGGAGA TTAGTGTGAGCCTTGCCAAAGATGAGCCTGACACAAATCTCGTGGCCTTAATGAAGGAAG AAGGGGTGAGACTCCTAAGAGAAGCAATGGGAATTTACATCAGCACCCTCAAAACAGAGT TCACGCAGGGTATGATCTTGCCTACAATGAATGGAGAGTCGGTAGACCCAGCCGGGCAGC CAGCACTGAAAACCGAGGAGCGCAAGGCTAAGTCTGCTCCTTCAAAAACCCAGGCCAGAC CTGTTGGTGTCAAAATCCCCACTTGTAAAATCACCCTTAGAGAGACCTTCCTGACATCAC CAGAGGAGCTCTATAGAGTTTTCACCAACCAAGAGCTTGTTCAGGCCTTTACCCACGCTC CTGCGATGTTAGAAGCAGACAAGGGCGGCAAGTTTCACCTGGTCGATGGCAATGTTTCTG GAGAATTCACTGATCTGGTCCCTGAGAAACATATCGTGATGAAGTGGAGGTTTAAATCTT GGCCAGAAGGGCACTTTGCCACCATCACCTTGACCTTCATTGACAAGAACGGAGAGACGG AGCTGTGCATGGAAGGCCGAGGCGTCCCTGCTCCTGAGGAAGAGAGAACGCGGCAGGGCT GGCAGCGGTACTACTTTGAGGGCATCAAACAGACCTTTGGCTACGGCGCACGCTTGTTTT AGGGCCAGCAGCAGGGGCTGCAGCCGCCCATCACTTTGGTCCTCTCTCTCCTGACTGGGC CTGTGACTCACAGGATTGCACCATGCCAGCCACTAACTTGGGGCTGGGGCCCCTTCCCTT CATGTAAACCTTGGTTTGTGCATGTTTTCTGCTGGGTGGGAATAGAGGGTAATTTCTCTT TTATGTGTACATACGCTAAATAAACGTAATTTAAAAAATGTAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1240-1358, + strand, RNAz p=0.522724 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1240-1358, + strand, RNAz p=0.522724 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_012111, + |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-206, gnl|bosTau2|chr10 (61251113-61251319) | |
| 1-206, gnl|Hg17|chr14 (76994160-76994366) | |
| 1-206, gnl|Mm7|chr12 (85269364-85269568) | |
| 478-597, gnl|bosTau2|chr10 (61254991-61255110) | |
| 478-597, gnl|canFam2|chr8 (53299562-53299720) | |
| 478-597, gnl|danRer3|chr17 (47542049-47542190) | |
| 478-597, gnl|echTel1|scaffold_308517 (163140-163298) | |
| 478-597, gnl|fr1|chrUn (163246886-163247027) | |
| 478-597, gnl|galGal2|chr5 (36070615-36070759) | |
| 478-597, gnl|hg17|chr14 (76998718-76998876) | |
| 478-597, gnl|Hg17|chr14 (76998736-76998855) | |
| 478-597, gnl|loxAfr1|scaffold_729 (78439-78597) | |
| 478-597, gnl|mm7|chr12 (85272964-85273118) | |
| 478-597, gnl|Mm7|chr12 (85272981-85273100) | |
| 478-597, gnl|monDom2|scaffold_8 (55994212-55994059) | |
| 478-597, gnl|oryCun1|scaffold_119136 (59587-59438) | |
| 478-597, gnl|panTro1|chr15 (77063028-77063186) | |
| 478-597, gnl|rheMac2|chr7 (140614814-140614972) | |
| 478-597, gnl|xenTro1|scaffold_170 (336982-336859) | |
| 685-843, gnl|bosTau2|chr10 (61257090-61257250) | |
| 685-843, gnl|Hg17|chr14 (77001633-77001793) | |
| 685-843, gnl|Mm7|chr12 (85275216-85275370) | |
| 968-1358, gnl|bosTau2|chr10 (61258210-61258603) | |
| 968-1358, gnl|Hg17|chr14 (77005171-77005566) | |
| 968-1358, gnl|Mm7|chr12 (85276235-85276624) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-206, gnl|bosTau2|chr10 (61251113-61251319) | |
| 1-206, gnl|Hg17|chr14 (76994160-76994366) | |
| 1-206, gnl|Mm7|chr12 (85269364-85269568) | |
| 478-597, gnl|bosTau2|chr10 (61254991-61255110) | |
| 478-597, gnl|canFam2|chr8 (53299562-53299720) | |
| 478-597, gnl|danRer3|chr17 (47542049-47542190) | |
| 478-597, gnl|echTel1|scaffold_308517 (163140-163298) | |
| 478-597, gnl|fr1|chrUn (163246886-163247027) | |
| 478-597, gnl|galGal2|chr5 (36070615-36070759) | |
| 478-597, gnl|hg17|chr14 (76998718-76998876) | |
| 478-597, gnl|Hg17|chr14 (76998736-76998855) | |
| 478-597, gnl|loxAfr1|scaffold_729 (78439-78597) | |
| 478-597, gnl|mm7|chr12 (85272964-85273118) | |
| 478-597, gnl|Mm7|chr12 (85272981-85273100) | |
| 478-597, gnl|monDom2|scaffold_8 (55994212-55994059) | |
| 478-597, gnl|oryCun1|scaffold_119136 (59587-59438) | |
| 478-597, gnl|panTro1|chr15 (77063028-77063186) | |
| 478-597, gnl|rheMac2|chr7 (140614814-140614972) | |
| 478-597, gnl|xenTro1|scaffold_170 (336982-336859) | |
| 685-843, gnl|bosTau2|chr10 (61257090-61257250) | |
| 685-843, gnl|Hg17|chr14 (77001633-77001793) | |
| 685-843, gnl|Mm7|chr12 (85275216-85275370) | |
| 968-1358, gnl|bosTau2|chr10 (61258210-61258603) | |
| 968-1358, gnl|Hg17|chr14 (77005171-77005566) | |
| 968-1358, gnl|Mm7|chr12 (85276235-85276624) |
| Expressed library(ies): 33 entry(ies) | More info |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
| clu (0.717875) | |
| fcc (0.39557) | |
| eep (0.367692) | |
| ecc (0.345105) | |
| fhi (0.339155) | |
| nco (0.323468) | |
| csp (0.322373) | |
| cag (0.302389) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| fce (0.271592) | |
| pla (0.267344) | |
| cov (0.264306) | |
| bla (0.248694) | |
| med (0.232504) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| cty (0.20816) | |
| fli (0.202881) | |
| jej (0.197844) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cli (0.152812) | |
| spl (0.143184) | |
| pty (0.142714) | |
| cst (0.140036) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ldo (0.0970026) |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.717875) | |
| fcc (0.39557) | |
| eep (0.367692) | |
| ecc (0.345105) | |
| fhi (0.339155) | |
| nco (0.323468) | |
| csp (0.322373) | |
| cag (0.302389) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| fce (0.271592) | |
| pla (0.267344) | |
| cov (0.264306) | |
| bla (0.248694) | |
| med (0.232504) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| cty (0.20816) | |
| fli (0.202881) | |
| jej (0.197844) | |
| ton (0.1755) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cli (0.152812) | |
| spl (0.143184) | |
| pty (0.142714) | |
| cst (0.140036) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ldo (0.0970026) |