Ss1.1-Ova1-OVR010021C07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCGCCGGCGGCAGCGGCGGAGCTGCGGAGACTGGACTGAGGGCGAGCTGGGCCGCTGTA GTCAACCGCGCTCAGGTTAAATTGAATAAGGGATCTGACCTGACTGGCCCAGCCATACAA CTCCTCAAGAACAGTTCATAGTCACAGTGGAGAGATCAAGATGAATGCCATGCTGGAGAC CTCCGAGCTTCCAGCCGTGTTTGATGGGGTGAAGCTGGCCGCAGTGGCTGCTGTGCTGTA TGTGATCGTCCGGTGTTTGAACCTGAAGAGCCCCACAGCCCCGCCTGACCTCTACTTCCA GGACTCAGGGCTCTCACGCTTCCTGCTCAAGTCCTGTCCTCTTCTGACCAAAGAATACAT TCCACCGTTGATCTGGGGGAAAAGCGGGCACATCCAGACAGCCTTGTATGGGAAGATGGG AAGGGTGAGGTCACCACACCCGTATGGGCACCGGAAGTTCATCACCATGTCCGATGGAGC CACTTCGACCTTTGACCTCTTCGAACCCTTGGCTGAGCACTGTGTGGGAGATGACGTTAC CATGGTCATCTGCCCTGGAATTGCCAATCACAGCGAGAAGCAGTACATCCGCACCTTTGT CGACTATGCCCAGAAAAATGGCTACCGGTGCGCTGTGCTGAACCACCTGGGCGCCTTGCC TAACATTGAGCTGACCTCGCCACGCATGTTCACCTACGGCTGTACCTGGGAATTTGGAGC CATGGTCAACTACATCAAGAAGACGTATCCCCTCACCCAGCTGGTGGTTGTGGGCTTTAG CCTGGGCGGTAATATCGTGTGTAAATACTTGGGGGAGACCCAGGCCAACCAAGAAAAGGT CCTTTGCTGCGTCAGCGTGTGCCAGGGCTACAGCGCACTGAGGGCCCAGGAAACCTTCAT GCAGTGGGATCAGTGTCGGCGCTTCTACAACTTCCTCATGGCTGACAACATGAAGAGGAT TATCCTCTCGCACAGGCAAGCTCTTTTTGGAGACCATGTTAAGAAACCCCAGAGCCTGGA GGACACAGACCTGAGCCGCCTCTACACGGCGACATCCCTGATGCAGATCGACGACAATGT GATGCGGAAGTTTCATGGCTATAACTCCCTGAAGGAATATTACGAGGAAGAAAGCTGCAT GAGGTACCTGCACAGGATTTATGTGCCTCTCATGCTGGTGAATGCAGCTGATGACCCCTT GGTGCATGAAAGTCTTCTGACCATTCCAAAATCTCTTTCGGAGAAACGAGAAAATGTCAT GTTTGTGCTGCCGCTGCACGGGGGCCACCTGGGCTTCTTTGAGGGTTCCGTGCTGTTCCC TGAGCCCCTGACGTGGATGGATAAGCTGGTGGTGGAGTACGCCAATGCCATTTGCCAGTG GGAACGTAACAAGTCGCAGTGCTCTGACACGGAGCAGGTGGAGGCCGACCTGGAGTGAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCGCCGGCGGCAGCGGCGGAGCTGCGGAGACTGGACTGAGGGCGAGCTGGGCCGCTGTA GTCAACCGCGCTCAGGTTAAATTGAATAAGGGATCTGACCTGACTGGCCCAGCCATACAA CTCCTCAAGAACAGTTCATAGTCACAGTGGAGAGATCAAGATGAATGCCATGCTGGAGAC CTCCGAGCTTCCAGCCGTGTTTGATGGGGTGAAGCTGGCCGCAGTGGCTGCTGTGCTGTA TGTGATCGTCCGGTGTTTGAACCTGAAGAGCCCCACAGCCCCGCCTGACCTCTACTTCCA GGACTCAGGGCTCTCACGCTTCCTGCTCAAGTCCTGTCCTCTTCTGACCAAAGAATACAT TCCACCGTTGATCTGGGGGAAAAGCGGGCACATCCAGACAGCCTTGTATGGGAAGATGGG AAGGGTGAGGTCACCACACCCGTATGGGCACCGGAAGTTCATCACCATGTCCGATGGAGC CACTTCGACCTTTGACCTCTTCGAACCCTTGGCTGAGCACTGTGTGGGAGATGACGTTAC CATGGTCATCTGCCCTGGAATTGCCAATCACAGCGAGAAGCAGTACATCCGCACCTTTGT CGACTATGCCCAGAAAAATGGCTACCGGTGCGCTGTGCTGAACCACCTGGGCGCCTTGCC TAACATTGAGCTGACCTCGCCACGCATGTTCACCTACGGCTGTACCTGGGAATTTGGAGC CATGGTCAACTACATCAAGAAGACGTATCCCCTCACCCAGCTGGTGGTTGTGGGCTTTAG CCTGGGCGGTAATATCGTGTGTAAATACTTGGGGGAGACCCAGGCCAACCAAGAAAAGGT CCTTTGCTGCGTCAGCGTGTGCCAGGGCTACAGCGCACTGAGGGCCCAGGAAACCTTCAT GCAGTGGGATCAGTGTCGGCGCTTCTACAACTTCCTCATGGCTGACAACATGAAGAGGAT TATCCTCTCGCACAGGCAAGCTCTTTTTGGAGACCATGTTAAGAAACCCCAGAGCCTGGA GGACACAGACCTGAGCCGCCTCTACACGGCGACATCCCTGATGCAGATCGACGACAATGT GATGCGGAAGTTTCATGGCTATAACTCCCTGAAGGAATATTACGAGGAAGAAAGCTGCAT GAGGTACCTGCACAGGATTTATGTGCCTCTCATGCTGGTGAATGCAGCTGATGACCCCTT GGTGCATGAAAGTCTTCTGACCATTCCAAAATCTCTTTCGGAGAAACGAGAAAATGTCAT GTTTGTGCTGCCGCTGCACGGGGGCCACCTGGGCTTCTTTGAGGGTTCCGTGCTGTTCCC TGAGCCCCTGACGTGGATGGATAAGCTGGTGGTGGAGTACGCCAATGCCATTTGCCAGTG GGAACGTAACAAGTCGCAGTGCTCTGACACGGAGCAGGTGGAGGCCGACCTGGAGTGAGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 62 entry(ies) | More info |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
| 153-354, gnl|bosTau2|chr21 (16148572-16148371) | |
| 153-354, gnl|Hg17|chr15 (87460555-87460756) | |
| 153-354, gnl|Mm7|chr7 (75160418-75160619) | |
| 355-534, gnl|bosTau2|chr21 (16109844-16109665) | |
| 355-534, gnl|canFam2|chr3 (55073410-55073550) | |
| 355-534, gnl|danRer3|chr25 (11718511-11718373) | |
| 355-534, gnl|dasNov1|scaffold_25385 (39988-39847) | |
| 355-534, gnl|echTel1|scaffold_206314 (2555-2405) | |
| 355-534, gnl|fr1|chrUn (252293482-252293614) | |
| 355-534, gnl|galGal2|chr10 (13563487-13563352) | |
| 355-534, gnl|hg17|chr15 (87495898-87496036) | |
| 355-534, gnl|Hg17|chr15 (87495912-87496091) | |
| 355-534, gnl|loxAfr1|scaffold_5779 (5271-5410) | |
| 355-534, gnl|mm7|chr7 (75191425-75191574) | |
| 355-534, gnl|Mm7|chr7 (75191450-75191629) | |
| 355-534, gnl|monDom2|scaffold_45 (11403947-11403807) | |
| 355-534, gnl|oryCun1|scaffold_207330 (49525-49660) | |
| 355-534, gnl|panTro1|chr16 (88364973-88365111) | |
| 355-534, gnl|rheMac2|chr7 (68775741-68775879) | |
| 355-534, gnl|rn3|chr1 (135157573-135157722) | |
| 355-534, gnl|tetNig1|chrUn_random (25845707-25845578) | |
| 355-534, gnl|xenTro1|scaffold_130 (1409156-1409019) | |
| 698-883, gnl|bosTau2|chr21 (16091708-16091523) | |
| 698-883, gnl|canFam2|chr3 (55090039-55090254) | |
| 698-883, gnl|danRer3|chr25 (11715237-11715047) | |
| 698-883, gnl|dasNov1|scaffold_20179 (39218-38999) | |
| 698-883, gnl|echTel1|scaffold_278050 (32706-32928) | |
| 698-883, gnl|fr1|chrUn (252294502-252294708) | |
| 698-883, gnl|galGal2|chr10 (13558636-13558436) | |
| 698-883, gnl|hg17|chr15 (87520019-87520238) | |
| 698-883, gnl|Hg17|chr15 (87520046-87520231) | |
| 698-883, gnl|loxAfr1|scaffold_151834 (541-758) | |
| 698-883, gnl|mm7|chr7 (75216531-75216749) | |
| 698-883, gnl|Mm7|chr7 (75216557-75216742) | |
| 698-883, gnl|monDom2|scaffold_45 (11386601-11386385) | |
| 698-883, gnl|oryCun1|scaffold_193506 (58535-58317) | |
| 698-883, gnl|panTro1|chr16 (88389164-88389383) | |
| 698-883, gnl|rheMac2|chr7 (68800195-68800414) | |
| 698-883, gnl|rn3|chr1 (135176465-135176683) | |
| 698-883, gnl|tetNig1|chrUn_random (25844847-25844655) | |
| 698-883, gnl|xenTro1|scaffold_130 (1401507-1401289) | |
| 974-1087, gnl|bosTau2|chr21 (16078960-16078847) | |
| 974-1087, gnl|Hg17|chr15 (87532426-87532539) | |
| 974-1087, gnl|Mm7|chr7 (75222284-75222397) | |
| 1232-1440, gnl|bosTau2|chr21 (16073140-16072932) | |
| 1232-1440, gnl|canFam2|chr3 (55110471-55110684) | |
| 1232-1440, gnl|danRer3|chr25 (11706615-11706440) | |
| 1232-1440, gnl|dasNov1|scaffold_15975 (3426-3213) | |
| 1232-1440, gnl|fr1|chrUn (252297051-252297207) | |
| 1232-1440, gnl|galGal2|chr10 (13550108-13549900) | |
| 1232-1440, gnl|hg17|chr15 (87539446-87539659) | |
| 1232-1440, gnl|Hg17|chr15 (87539452-87539660) | |
| 1232-1440, gnl|loxAfr1|scaffold_5779 (38980-39193) | |
| 1232-1440, gnl|mm7|chr7 (75228239-75228453) | |
| 1232-1440, gnl|Mm7|chr7 (75228245-75228454) | |
| 1232-1440, gnl|monDom2|scaffold_45 (11366811-11366595) | |
| 1232-1440, gnl|oryCun1|scaffold_193506 (41591-41378) | |
| 1232-1440, gnl|panTro1|chr16 (88409238-88409451) | |
| 1232-1440, gnl|rheMac2|chr7 (68820840-68821053) | |
| 1232-1440, gnl|rn3|chr1 (135189403-135189617) | |
| 1232-1440, gnl|tetNig1|chrUn_random (25843337-25843148) | |
| 1232-1440, gnl|xenTro1|scaffold_130 (1396108-1395892) |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 153-354, gnl|bosTau2|chr21 (16148572-16148371) | |
| 153-354, gnl|Hg17|chr15 (87460555-87460756) | |
| 153-354, gnl|Mm7|chr7 (75160418-75160619) | |
| 355-534, gnl|bosTau2|chr21 (16109844-16109665) | |
| 355-534, gnl|canFam2|chr3 (55073410-55073550) | |
| 355-534, gnl|danRer3|chr25 (11718511-11718373) | |
| 355-534, gnl|dasNov1|scaffold_25385 (39988-39847) | |
| 355-534, gnl|echTel1|scaffold_206314 (2555-2405) | |
| 355-534, gnl|fr1|chrUn (252293482-252293614) | |
| 355-534, gnl|galGal2|chr10 (13563487-13563352) | |
| 355-534, gnl|hg17|chr15 (87495898-87496036) | |
| 355-534, gnl|Hg17|chr15 (87495912-87496091) | |
| 355-534, gnl|loxAfr1|scaffold_5779 (5271-5410) | |
| 355-534, gnl|mm7|chr7 (75191425-75191574) | |
| 355-534, gnl|Mm7|chr7 (75191450-75191629) | |
| 355-534, gnl|monDom2|scaffold_45 (11403947-11403807) | |
| 355-534, gnl|oryCun1|scaffold_207330 (49525-49660) | |
| 355-534, gnl|panTro1|chr16 (88364973-88365111) | |
| 355-534, gnl|rheMac2|chr7 (68775741-68775879) | |
| 355-534, gnl|rn3|chr1 (135157573-135157722) | |
| 355-534, gnl|tetNig1|chrUn_random (25845707-25845578) | |
| 355-534, gnl|xenTro1|scaffold_130 (1409156-1409019) | |
| 698-883, gnl|bosTau2|chr21 (16091708-16091523) | |
| 698-883, gnl|canFam2|chr3 (55090039-55090254) | |
| 698-883, gnl|danRer3|chr25 (11715237-11715047) | |
| 698-883, gnl|dasNov1|scaffold_20179 (39218-38999) | |
| 698-883, gnl|echTel1|scaffold_278050 (32706-32928) | |
| 698-883, gnl|fr1|chrUn (252294502-252294708) | |
| 698-883, gnl|galGal2|chr10 (13558636-13558436) | |
| 698-883, gnl|hg17|chr15 (87520019-87520238) | |
| 698-883, gnl|Hg17|chr15 (87520046-87520231) | |
| 698-883, gnl|loxAfr1|scaffold_151834 (541-758) | |
| 698-883, gnl|mm7|chr7 (75216531-75216749) | |
| 698-883, gnl|Mm7|chr7 (75216557-75216742) | |
| 698-883, gnl|monDom2|scaffold_45 (11386601-11386385) | |
| 698-883, gnl|oryCun1|scaffold_193506 (58535-58317) | |
| 698-883, gnl|panTro1|chr16 (88389164-88389383) | |
| 698-883, gnl|rheMac2|chr7 (68800195-68800414) | |
| 698-883, gnl|rn3|chr1 (135176465-135176683) | |
| 698-883, gnl|tetNig1|chrUn_random (25844847-25844655) | |
| 698-883, gnl|xenTro1|scaffold_130 (1401507-1401289) | |
| 974-1087, gnl|bosTau2|chr21 (16078960-16078847) | |
| 974-1087, gnl|Hg17|chr15 (87532426-87532539) | |
| 974-1087, gnl|Mm7|chr7 (75222284-75222397) | |
| 1232-1440, gnl|bosTau2|chr21 (16073140-16072932) | |
| 1232-1440, gnl|canFam2|chr3 (55110471-55110684) | |
| 1232-1440, gnl|danRer3|chr25 (11706615-11706440) | |
| 1232-1440, gnl|dasNov1|scaffold_15975 (3426-3213) | |
| 1232-1440, gnl|fr1|chrUn (252297051-252297207) | |
| 1232-1440, gnl|galGal2|chr10 (13550108-13549900) | |
| 1232-1440, gnl|hg17|chr15 (87539446-87539659) | |
| 1232-1440, gnl|Hg17|chr15 (87539452-87539660) | |
| 1232-1440, gnl|loxAfr1|scaffold_5779 (38980-39193) | |
| 1232-1440, gnl|mm7|chr7 (75228239-75228453) | |
| 1232-1440, gnl|Mm7|chr7 (75228245-75228454) | |
| 1232-1440, gnl|monDom2|scaffold_45 (11366811-11366595) | |
| 1232-1440, gnl|oryCun1|scaffold_193506 (41591-41378) | |
| 1232-1440, gnl|panTro1|chr16 (88409238-88409451) | |
| 1232-1440, gnl|rheMac2|chr7 (68820840-68821053) | |
| 1232-1440, gnl|rn3|chr1 (135189403-135189617) | |
| 1232-1440, gnl|tetNig1|chrUn_random (25843337-25843148) | |
| 1232-1440, gnl|xenTro1|scaffold_130 (1396108-1395892) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) | |
| jca (0.11396) |