Ss1.1-Ova1-OVR010021D12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGCGGCAAATATTTACTTTAAATAACAAAAATTACAGTTGCATGCCACACCTATTTACA AAAATGCCTTGCTCTAGAAAAATAAAAGCAAACCATTTCCTCTGGCCTGTCTGGGAGGGG AACTTGCCCCAGAAGCTCCGTTCCTTTCCCGTGGCCGACAGGAGCTACAGGGCCCATTCA CGCCCAGGCTCTATGTGTGGTCGTCCTGCTGCCCAAGGGCTGTGCCGACCCCTTCCTCGG CCTCCAGGAAGCACAGGCAGAAGTGGTCCTTGCTGAGGAGAGCCAGGGAGTCCCCGCTCG GGTGCCAGCACAGGGAGAGCACCTGAAAGTCGCCTTCTCCGGGCACCTGCACTGACACGC AGCCCGCCGGCGACCACAGGTACACCTGGCTGCCCCCTGTGCAGATGGCCAGCCGGGGCT GCCGCGGGTCCCACCGGAAGGACCGCACAGCCGACAGCTGCTCCAGCACCACGAAGAGCC TCAGCTTCCGGACGTCCCAGATCCAGACGGCGCTTGGGATGCTGTCGCTCCTCGTGGCCA GGAAGTAGTTGTCCAGACTGAAGGCCAGGGCCCCGATGCCCATCCTCGGGTTGGCTCTGT CTGCCGTGGGTTTCAGAGTCCGGAGGGAGGCCGGCACCGTGGCGATCTCATATTTGCTCT CTGTGGTGGCCCGGGGACCGGCCGGGGCTCTGGGTGGAGGGAAGGCCAGGCGGCCCAGCG CCAGCGGCGGGCTCTTCTCTGCCTCCCTGTACACCACTGTGCTGGGGCTGCTGACAGCCG CAGGATGCCCCAGCTCTGCGAGCAGCTTCCACGTCACGTGGTTGAGAACGCGCACCTTTC CGTCGTAGCTCCCGACTGCCAGGAACTGACTGCTGGGGCTCCAAGCCACCGACTTGATGC CCAGGGACCACTCGTAGGCGCAGTAGGTGGACAGCAGCCGGCCGTCCAGGGAGTAGAGCA GGATCTTGTACTCCAGGCAGGTGTCCCAGGCCGCCAGCACGCAGCCGTTGGGGGCCCACT CGATCCCTGCCAGGTCCTGTGTGTCCGTCTCAAAGTGCCGCAGGAGCTGCCAGTCGCTGC AGACAAAGATGCTCACGTGGTCCCTGCAGTCCCGTCTCTCCGCCAAGGCCAGGTAGCGGC CGTCCCTGGTAAAGGTTATTCCCTGCTGACAAGCTTTAGGGTATTTGATGTAGGACACAG ACTTCGTGCATAAGGACCAGACAGTTATCCGCAGGTGGAACTCTGTTGTGTTGAGGATGT GCCGCCCGTCTGGGCTCCAGCAGGAAGCCACCAGCCCTGCAGAGCCCTCATCTATTTTGC AGTGCCAGTCTGGCTGCTCCAAAGACCACACCTGCACCAGCCCCCGCCTGTAGAGGGCGC ACAGGATGAAGAGCGAGTCGGCCGACCACTCGATGTGCTGGATCTGGTCCAGGCACGTGT ACAGCTGGAGGATCTGAAGGGTGCTGGCATCTCGAACCACCAACCGGTACTGGACGCAGG AGGCCAGGTACTTGCCGTCGGGGGAGAACTTGCAGAGCAGGTTGGAGAGCTTGAACACCT CCGAGAAGTTCATGGCAGCCGCTGGATCCCGGGCCCGCGGAGCCCCGCCGCAACCGCCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGCGGCAAATATTTACTTTAAATAACAAAAATTACAGTTGCATGCCACACCTATTTACA AAAATGCCTTGCTCTAGAAAAATAAAAGCAAACCATTTCCTCTGGCCTGTCTGGGAGGGG AACTTGCCCCAGAAGCTCCGTTCCTTTCCCGTGGCCGACAGGAGCTACAGGGCCCATTCA CGCCCAGGCTCTATGTGTGGTCGTCCTGCTGCCCAAGGGCTGTGCCGACCCCTTCCTCGG CCTCCAGGAAGCACAGGCAGAAGTGGTCCTTGCTGAGGAGAGCCAGGGAGTCCCCGCTCG GGTGCCAGCACAGGGAGAGCACCTGAAAGTCGCCTTCTCCGGGCACCTGCACTGACACGC AGCCCGCCGGCGACCACAGGTACACCTGGCTGCCCCCTGTGCAGATGGCCAGCCGGGGCT GCCGCGGGTCCCACCGGAAGGACCGCACAGCCGACAGCTGCTCCAGCACCACGAAGAGCC TCAGCTTCCGGACGTCCCAGATCCAGACGGCGCTTGGGATGCTGTCGCTCCTCGTGGCCA GGAAGTAGTTGTCCAGACTGAAGGCCAGGGCCCCGATGCCCATCCTCGGGTTGGCTCTGT CTGCCGTGGGTTTCAGAGTCCGGAGGGAGGCCGGCACCGTGGCGATCTCATATTTGCTCT CTGTGGTGGCCCGGGGACCGGCCGGGGCTCTGGGTGGAGGGAAGGCCAGGCGGCCCAGCG CCAGCGGCGGGCTCTTCTCTGCCTCCCTGTACACCACTGTGCTGGGGCTGCTGACAGCCG CAGGATGCCCCAGCTCTGCGAGCAGCTTCCACGTCACGTGGTTGAGAACGCGCACCTTTC CGTCGTAGCTCCCGACTGCCAGGAACTGACTGCTGGGGCTCCAAGCCACCGACTTGATGC CCAGGGACCACTCGTAGGCGCAGTAGGTGGACAGCAGCCGGCCGTCCAGGGAGTAGAGCA GGATCTTGTACTCCAGGCAGGTGTCCCAGGCCGCCAGCACGCAGCCGTTGGGGGCCCACT CGATCCCTGCCAGGTCCTGTGTGTCCGTCTCAAAGTGCCGCAGGAGCTGCCAGTCGCTGC AGACAAAGATGCTCACGTGGTCCCTGCAGTCCCGTCTCTCCGCCAAGGCCAGGTAGCGGC CGTCCCTGGTAAAGGTTATTCCCTGCTGACAAGCTTTAGGGTATTTGATGTAGGACACAG ACTTCGTGCATAAGGACCAGACAGTTATCCGCAGGTGGAACTCTGTTGTGTTGAGGATGT GCCGCCCGTCTGGGCTCCAGCAGGAAGCCACCAGCCCTGCAGAGCCCTCATCTATTTTGC AGTGCCAGTCTGGCTGCTCCAAAGACCACACCTGCACCAGCCCCCGCCTGTAGAGGGCGC ACAGGATGAAGAGCGAGTCGGCCGACCACTCGATGTGCTGGATCTGGTCCAGGCACGTGT ACAGCTGGAGGATCTGAAGGGTGCTGGCATCTCGAACCACCAACCGGTACTGGACGCAGG AGGCCAGGTACTTGCCGTCGGGGGAGAACTTGCAGAGCAGGTTGGAGAGCTTGAACACCT CCGAGAAGTTCATGGCAGCCGCTGGATCCCGGGCCCGCGGAGCCCCGCCGCAACCGCCCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 7-335, gnl|bosTau2|chr16 (35540833-35540514) | |
| 7-335, gnl|Hg17|chr1 (3570504-3570840) | |
| 7-335, gnl|Mm7|chr4 (153146350-153146072) | |
| 526-651, gnl|bosTau2|chr16 (35539840-35539715) | |
| 526-651, gnl|canFam2|chr5 (61162729-61162821) | |
| 526-651, gnl|danRer3|chr8 (41522281-41522191) | |
| 526-651, gnl|dasNov1|scaffold_143975 (2548-2463) | |
| 526-651, gnl|fr1|chrUn (70387727-70387819) | |
| 526-651, gnl|galGal2|chr21 (892501-892409) | |
| 526-651, gnl|hg17|chr1 (3571928-3572020) | |
| 526-651, gnl|Hg17|chr1 (3571934-3572059) | |
| 526-651, gnl|loxAfr1|scaffold_102750 (9614-9704) | |
| 526-651, gnl|mm7|chr4 (153144916-153144824) | |
| 526-651, gnl|Mm7|chr4 (153144908-153144783) | |
| 526-651, gnl|monDom2|scaffold_78 (6869085-6868993) | |
| 526-651, gnl|panTro1|chr1 (3423863-3423955) | |
| 526-651, gnl|rheMac2|chr1 (6592288-6592380) | |
| 526-651, gnl|tetNig1|chr9 (1429502-1429415) | |
| 526-651, gnl|xenTro1|scaffold_593 (380630-380721) | |
| 833-975, gnl|bosTau2|chr16 (35537857-35537715) | |
| 833-975, gnl|Hg17|chr1 (3574878-3575020) | |
| 833-975, gnl|Mm7|chr4 (153142240-153142098) | |
| 1062-1173, gnl|bosTau2|chr16 (35536661-35536551) | |
| 1062-1173, gnl|Hg17|chr1 (3576720-3576829) | |
| 1062-1173, gnl|Mm7|chr4 (153141269-153141158) | |
| 1350-1508, gnl|bosTau2|chr16 (35532850-35532692) | |
| 1350-1508, gnl|canFam2|chr5 (61173169-61173359) | |
| 1350-1508, gnl|danRer3|chr8 (41499903-41499740) | |
| 1350-1508, gnl|echTel1|scaffold_307848 (6053-5872) | |
| 1350-1508, gnl|fr1|chrUn (70394300-70394464) | |
| 1350-1508, gnl|galGal2|chr21 (882015-881821) | |
| 1350-1508, gnl|hg17|chr1 (3587114-3587305) | |
| 1350-1508, gnl|Hg17|chr1 (3587123-3587285) | |
| 1350-1508, gnl|loxAfr1|scaffold_10339 (41371-41552) | |
| 1350-1508, gnl|mm7|chr4 (153134954-153134765) | |
| 1350-1508, gnl|Mm7|chr4 (153134939-153134781) | |
| 1350-1508, gnl|monDom2|scaffold_78 (6828943-6828746) | |
| 1350-1508, gnl|panTro1|chr1 (3439047-3439238) | |
| 1350-1508, gnl|rheMac2|chr1 (6608960-6609151) | |
| 1350-1508, gnl|rn3|chr5 (171117002-171116824) | |
| 1350-1508, gnl|tetNig1|chr9 (1423651-1423454) | |
| 1350-1508, gnl|xenTro1|scaffold_593 (404023-404204) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 7-335, gnl|bosTau2|chr16 (35540833-35540514) | |
| 7-335, gnl|Hg17|chr1 (3570504-3570840) | |
| 7-335, gnl|Mm7|chr4 (153146350-153146072) | |
| 526-651, gnl|bosTau2|chr16 (35539840-35539715) | |
| 526-651, gnl|canFam2|chr5 (61162729-61162821) | |
| 526-651, gnl|danRer3|chr8 (41522281-41522191) | |
| 526-651, gnl|dasNov1|scaffold_143975 (2548-2463) | |
| 526-651, gnl|fr1|chrUn (70387727-70387819) | |
| 526-651, gnl|galGal2|chr21 (892501-892409) | |
| 526-651, gnl|hg17|chr1 (3571928-3572020) | |
| 526-651, gnl|Hg17|chr1 (3571934-3572059) | |
| 526-651, gnl|loxAfr1|scaffold_102750 (9614-9704) | |
| 526-651, gnl|mm7|chr4 (153144916-153144824) | |
| 526-651, gnl|Mm7|chr4 (153144908-153144783) | |
| 526-651, gnl|monDom2|scaffold_78 (6869085-6868993) | |
| 526-651, gnl|panTro1|chr1 (3423863-3423955) | |
| 526-651, gnl|rheMac2|chr1 (6592288-6592380) | |
| 526-651, gnl|tetNig1|chr9 (1429502-1429415) | |
| 526-651, gnl|xenTro1|scaffold_593 (380630-380721) | |
| 833-975, gnl|bosTau2|chr16 (35537857-35537715) | |
| 833-975, gnl|Hg17|chr1 (3574878-3575020) | |
| 833-975, gnl|Mm7|chr4 (153142240-153142098) | |
| 1062-1173, gnl|bosTau2|chr16 (35536661-35536551) | |
| 1062-1173, gnl|Hg17|chr1 (3576720-3576829) | |
| 1062-1173, gnl|Mm7|chr4 (153141269-153141158) | |
| 1350-1508, gnl|bosTau2|chr16 (35532850-35532692) | |
| 1350-1508, gnl|canFam2|chr5 (61173169-61173359) | |
| 1350-1508, gnl|danRer3|chr8 (41499903-41499740) | |
| 1350-1508, gnl|echTel1|scaffold_307848 (6053-5872) | |
| 1350-1508, gnl|fr1|chrUn (70394300-70394464) | |
| 1350-1508, gnl|galGal2|chr21 (882015-881821) | |
| 1350-1508, gnl|hg17|chr1 (3587114-3587305) | |
| 1350-1508, gnl|Hg17|chr1 (3587123-3587285) | |
| 1350-1508, gnl|loxAfr1|scaffold_10339 (41371-41552) | |
| 1350-1508, gnl|mm7|chr4 (153134954-153134765) | |
| 1350-1508, gnl|Mm7|chr4 (153134939-153134781) | |
| 1350-1508, gnl|monDom2|scaffold_78 (6828943-6828746) | |
| 1350-1508, gnl|panTro1|chr1 (3439047-3439238) | |
| 1350-1508, gnl|rheMac2|chr1 (6608960-6609151) | |
| 1350-1508, gnl|rn3|chr5 (171117002-171116824) | |
| 1350-1508, gnl|tetNig1|chr9 (1423651-1423454) | |
| 1350-1508, gnl|xenTro1|scaffold_593 (404023-404204) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| fty (0.17584) | |
| cki (0.165235) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| eru (0.120048) | |
| ebs (0.118301) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.17584) | |
| cki (0.165235) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| eru (0.120048) | |
| ebs (0.118301) |