Non-Coding RNA Search

Ss1.1-Ova1-OVR010021E09.5

Sequence:


               
               GTCGGAGGTAGAGCGCGCCATCAAGAGGATGCGGCACCTGTCCACGGGCACCATGACCGG
GCTGGCCATCCAGTACGCCCTGAACATCGCCTTCTCGGAAGCAGAGGGCGCCCGGCCCCT
GCGGGAGAACGTGCCGCGGGTCATCATGATCGTGACGGACGGGCGGCCCCAGGACTCAGT
GGCCGAGGTGGCTGCCAATGCCCGGAACACGGGCATCCTGATCTTTGCCATCGGCGTGGG
CCAAGTGGACTTCAACACCCTGAAGGCCATCGGGAGCGAGCCCCACGAGGACCACGTCTT
CCTGGTGGCCAACTTCAGCCAGATGGAGTCGCTGACCTCCGTGTTCCAGACCAAGCTGTG
CACGGTCCACATGTGCAGCATCCTGGAGCACAACTGCGCCCACTTCTGAAAAAAAAAAAA
AAAAAAAAAGGAATCCTGGTTGAGTAGAGCCCCATGAGAGACACGGGATAACCAGCTGAC
TGCATTCCAGGATCTGTGCGCGGCAGAGGACCACGGCTGCGAGCAACTCTGCGTGAACCT
GCTGGGCTCCTTTGTGTGCCAGTGCTACGGGGGCTACACCCTGGCGGAGGACGGGAAACG
GTGCGTGGCTGTGGACTACTGTGCCTCAGAAAACCACGGATGCGAACACGAGTGTGTAAA
TGCTGACACCTCCTACGTCTGCCGGTGCCCTAAAGGATTTGCTCTGAACCCAGATAAGAA
AACATGTGCAAAAATAGACCACTGCGCGTCACCTAACCACGGCTGCCAGCACGAGTGTGT
CAACACAGATGATTCCTACTTCTGCCGCTGCCTAAAAGGCTTTACTCTGAATCCAGATCA
GAAAACCTGTAGAAGGATCAATTACTGTGCGCTGAACAAACCAGGCTGTGAGCACGAATG
CATCAACACGGAGGAGGGCCACTACTGCCGCTGTCGCCGGGGCTACACGCTGGACCCCAA
CGGCAAGACCTGCAGCCGGGTGGATCACTGCGCGGAGCAAGACCACGGCTGCGAGCAGCT
GTGTCTGAACACCGAGGACTCCTTCGTGTGCCAGTGCTCGGAAGGCTTCCTCATCAACGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCGGAGGTAGAGCGCGCCATCAAGAGGATGCGGCACCTGTCCACGGGCACCATGACCGG
GCTGGCCATCCAGTACGCCCTGAACATCGCCTTCTCGGAAGCAGAGGGCGCCCGGCCCCT
GCGGGAGAACGTGCCGCGGGTCATCATGATCGTGACGGACGGGCGGCCCCAGGACTCAGT
GGCCGAGGTGGCTGCCAATGCCCGGAACACGGGCATCCTGATCTTTGCCATCGGCGTGGG
CCAAGTGGACTTCAACACCCTGAAGGCCATCGGGAGCGAGCCCCACGAGGACCACGTCTT
CCTGGTGGCCAACTTCAGCCAGATGGAGTCGCTGACCTCCGTGTTCCAGACCAAGCTGTG
CACGGTCCACATGTGCAGCATCCTGGAGCACAACTGCGCCCACTTCTGAAAAAAAAAAAA
AAAAAAAAAGGAATCCTGGTTGAGTAGAGCCCCATGAGAGACACGGGATAACCAGCTGAC
TGCATTCCAGGATCTGTGCGCGGCAGAGGACCACGGCTGCGAGCAACTCTGCGTGAACCT
GCTGGGCTCCTTTGTGTGCCAGTGCTACGGGGGCTACACCCTGGCGGAGGACGGGAAACG
GTGCGTGGCTGTGGACTACTGTGCCTCAGAAAACCACGGATGCGAACACGAGTGTGTAAA
TGCTGACACCTCCTACGTCTGCCGGTGCCCTAAAGGATTTGCTCTGAACCCAGATAAGAA
AACATGTGCAAAAATAGACCACTGCGCGTCACCTAACCACGGCTGCCAGCACGAGTGTGT
CAACACAGATGATTCCTACTTCTGCCGCTGCCTAAAAGGCTTTACTCTGAATCCAGATCA
GAAAACCTGTAGAAGGATCAATTACTGTGCGCTGAACAAACCAGGCTGTGAGCACGAATG
CATCAACACGGAGGAGGGCCACTACTGCCGCTGTCGCCGGGGCTACACGCTGGACCCCAA
CGGCAAGACCTGCAGCCGGGTGGATCACTGCGCGGAGCAAGACCACGGCTGCGAGCAGCT
GTGTCTGAACACCGAGGACTCCTTCGTGTGCCAGTGCTCGGAAGGCTTCCTCATCAACGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               200-319, + strand, RNAz p=0.602996

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-319, + strand, RNAz p=0.602996

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AL833931, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AL833931, +

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-362, gnl|bosTau2|chr14 (39875467-39875106)
               

               
               1-362, gnl|Hg17|chr8 (99012565-99012926)
               

               
               1-362, gnl|Mm7|chr15 (34454205-34454566)
               


               
               608-731, gnl|bosTau2|chr14 (39783797-39783674)
               

               
               608-731, gnl|canFam2|chr13 (3243440-3243595)
               

               
               608-731, gnl|dasNov1|scaffold_46521 (45588-45440)
               

               
               608-731, gnl|echTel1|scaffold_279085 (17187-17020)
               

               
               608-731, gnl|hg17|chr8 (99060263-99060429)
               

               
               608-731, gnl|Hg17|chr8 (99060289-99060412)
               

               
               608-731, gnl|loxAfr1|scaffold_10469 (15502-15341)
               

               
               608-731, gnl|mm7|chr15 (34497689-34497852)
               

               
               608-731, gnl|Mm7|chr15 (34497712-34497835)
               

               
               608-731, gnl|monDom2|scaffold_3 (66671183-66671014)
               

               
               608-731, gnl|oryCun1|scaffold_207852 (217755-217590)
               

               
               608-731, gnl|panTro1|chr7 (101336681-101336847)
               

               
               608-731, gnl|rheMac2|chr8 (100518020-100518186)
               

               
               608-731, gnl|rn3|chr7 (69849019-69849185)
               


               
               855-978, gnl|bosTau2|chr14 (39760155-39760032)
               

               
               855-978, gnl|Hg17|chr8 (99085065-99085188)
               

               
               855-978, gnl|Mm7|chr15 (34511823-34511946)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-362, gnl|bosTau2|chr14 (39875467-39875106)
               

               
               1-362, gnl|Hg17|chr8 (99012565-99012926)
               

               
               1-362, gnl|Mm7|chr15 (34454205-34454566)
               


               
               608-731, gnl|bosTau2|chr14 (39783797-39783674)
               

               
               608-731, gnl|canFam2|chr13 (3243440-3243595)
               

               
               608-731, gnl|dasNov1|scaffold_46521 (45588-45440)
               

               
               608-731, gnl|echTel1|scaffold_279085 (17187-17020)
               

               
               608-731, gnl|hg17|chr8 (99060263-99060429)
               

               
               608-731, gnl|Hg17|chr8 (99060289-99060412)
               

               
               608-731, gnl|loxAfr1|scaffold_10469 (15502-15341)
               

               
               608-731, gnl|mm7|chr15 (34497689-34497852)
               

               
               608-731, gnl|Mm7|chr15 (34497712-34497835)
               

               
               608-731, gnl|monDom2|scaffold_3 (66671183-66671014)
               

               
               608-731, gnl|oryCun1|scaffold_207852 (217755-217590)
               

               
               608-731, gnl|panTro1|chr7 (101336681-101336847)
               

               
               608-731, gnl|rheMac2|chr8 (100518020-100518186)
               

               
               608-731, gnl|rn3|chr7 (69849019-69849185)
               


               
               855-978, gnl|bosTau2|chr14 (39760155-39760032)
               

               
               855-978, gnl|Hg17|chr8 (99085065-99085188)
               

               
               855-978, gnl|Mm7|chr15 (34511823-34511946)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eep (0.122564)
               

               
               eru (0.120048)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               eru (0.120048)

	1-362, gnl\|bosTau2\|chr14 (39875467-39875106)
	1-362, gnl\|Hg17\|chr8 (99012565-99012926)
	1-362, gnl\|Mm7\|chr15 (34454205-34454566)

	608-731, gnl\|bosTau2\|chr14 (39783797-39783674)
	608-731, gnl\|canFam2\|chr13 (3243440-3243595)
	608-731, gnl\|dasNov1\|scaffold_46521 (45588-45440)
	608-731, gnl\|echTel1\|scaffold_279085 (17187-17020)
	608-731, gnl\|hg17\|chr8 (99060263-99060429)
	608-731, gnl\|Hg17\|chr8 (99060289-99060412)
	608-731, gnl\|loxAfr1\|scaffold_10469 (15502-15341)
	608-731, gnl\|mm7\|chr15 (34497689-34497852)
	608-731, gnl\|Mm7\|chr15 (34497712-34497835)
	608-731, gnl\|monDom2\|scaffold_3 (66671183-66671014)
	608-731, gnl\|oryCun1\|scaffold_207852 (217755-217590)
	608-731, gnl\|panTro1\|chr7 (101336681-101336847)
	608-731, gnl\|rheMac2\|chr8 (100518020-100518186)
	608-731, gnl\|rn3\|chr7 (69849019-69849185)

	855-978, gnl\|bosTau2\|chr14 (39760155-39760032)
	855-978, gnl\|Hg17\|chr8 (99085065-99085188)
	855-978, gnl\|Mm7\|chr15 (34511823-34511946)