Ss1.1-Ova1-OVR010021H04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCGGCGCGCAGCCCAGCCATGGGGGACCCCTTCATCCGCCACATCGCCCTCCTGGGCTT CGAAAAGCGCTTCGTCCCCAGCCAGCACTACGTCTACATGTTCCTGGTGAAGTGGCAGGA CCTGTCTGAGAAGCTGGTCTACCGGCGCTTCACTGAGATCTACGAATTCCACAAAACCTT AAAGCAGATGTTTCCCATCGAGGCCGGGGACATCACCCCGGAGAACAGGATCATCCCCCA CCTGCCAGCCCCGAGGTGGTTTGATGGGCAGCGGGTGGCCGAGAGCCGCCAGGGCACCCT CAGTGAATACTGCAGCGCGCTCATGAGCCTGCCTGTCAAGATCTCCCGCTGCCCCCACTT CCTCAACTTCTTCAAAGTGCGTCCCGACGACCTCAAGCTCCCCGCGGACAGCCAGGTGAA AAAGCCCGAGACATACCTGATGGCCAGAGATGGCAAGAATAACATTGCAGACATCACAGG CCCCATCATCCTGCAGACGTACCGCGCCATCGCCAGCTACGAGAAGAACTCACGTTCCGA GATGACTCTGGCCACGGGCGACGTGGTGGATGTCGTGGAGAAGAACGAGAATGGCTGGTG GTTCTGCCAAATGAAGACAAAGCGTGGCTGGGTTCCGGCATCCTACTTGGAGCCCCTGGA CAGTCCTGATGAATCAGAGGATCCAGAGCCCAACTATGAAGGTGAGCCCTACGTCACCAT CAAATCCTACACTGCCCTCTTGGAGGACGAGGTGTCCTTGGAGCAGGGGGAGACCATCGA GGTCATTCATAAGCTCCTGGATGGCTGGTGGGTCGTCAGGAAAGAAGACATCACAGGTTA CTTCCCATCCATGTACCTGCAGAAGGCAGGACAGGACGTAGCCGAGGCCCAAAGCAAGAT CAAGAGCCGTGGAGCACCGCCCCGGAGGTCCTCCATCCACAACGCGCACAGCATCCACCA GCGGTCGCGGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCGGCGCGCAGCCCAGCCATGGGGGACCCCTTCATCCGCCACATCGCCCTCCTGGGCTT CGAAAAGCGCTTCGTCCCCAGCCAGCACTACGTCTACATGTTCCTGGTGAAGTGGCAGGA CCTGTCTGAGAAGCTGGTCTACCGGCGCTTCACTGAGATCTACGAATTCCACAAAACCTT AAAGCAGATGTTTCCCATCGAGGCCGGGGACATCACCCCGGAGAACAGGATCATCCCCCA CCTGCCAGCCCCGAGGTGGTTTGATGGGCAGCGGGTGGCCGAGAGCCGCCAGGGCACCCT CAGTGAATACTGCAGCGCGCTCATGAGCCTGCCTGTCAAGATCTCCCGCTGCCCCCACTT CCTCAACTTCTTCAAAGTGCGTCCCGACGACCTCAAGCTCCCCGCGGACAGCCAGGTGAA AAAGCCCGAGACATACCTGATGGCCAGAGATGGCAAGAATAACATTGCAGACATCACAGG CCCCATCATCCTGCAGACGTACCGCGCCATCGCCAGCTACGAGAAGAACTCACGTTCCGA GATGACTCTGGCCACGGGCGACGTGGTGGATGTCGTGGAGAAGAACGAGAATGGCTGGTG GTTCTGCCAAATGAAGACAAAGCGTGGCTGGGTTCCGGCATCCTACTTGGAGCCCCTGGA CAGTCCTGATGAATCAGAGGATCCAGAGCCCAACTATGAAGGTGAGCCCTACGTCACCAT CAAATCCTACACTGCCCTCTTGGAGGACGAGGTGTCCTTGGAGCAGGGGGAGACCATCGA GGTCATTCATAAGCTCCTGGATGGCTGGTGGGTCGTCAGGAAAGAAGACATCACAGGTTA CTTCCCATCCATGTACCTGCAGAAGGCAGGACAGGACGTAGCCGAGGCCCAAAGCAAGAT CAAGAGCCGTGGAGCACCGCCCCGGAGGTCCTCCATCCACAACGCGCACAGCATCCACCA GCGGTCGCGGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 280-399, - strand, RNAz p=0.599757 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 280-399, - strand, RNAz p=0.599757 |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 241-415, gnl|bosTau2|chr25 (30258272-30258446) | |
| 241-415, gnl|canFam2|chr6 (8712773-8712543) | |
| 241-415, gnl|danRer3|chr5 (67366712-67366919) | |
| 241-415, gnl|echTel1|scaffold_142750 (854-615) | |
| 241-415, gnl|fr1|chrUn (146924689-146924884) | |
| 241-415, gnl|galGal2|chr19 (2418622-2418401) | |
| 241-415, gnl|hg17|chr7 (72084547-72084748) | |
| 241-415, gnl|Hg17|chr7 (74027163-74026992) | |
| 241-415, gnl|mm7|chr5 (133476546-133476319) | |
| 241-415, gnl|Mm7|chr5 (133476501-133476327) | |
| 241-415, gnl|monDom2|scaffold_81 (6379428-6379224) | |
| 241-415, gnl|panTro1|chr6 (75385254-75385455) | |
| 241-415, gnl|rheMac2|chr3 (52232911-52233112) | |
| 241-415, gnl|rn3|chr12 (23443293-23443516) | |
| 241-415, gnl|tetNig1|chr7 (10072321-10072467) | |
| 468-590, gnl|bosTau2|chr25 (30260629-30260751) | |
| 468-590, gnl|canFam2|chr6 (8709659-8709484) | |
| 468-590, gnl|danRer3|chr5 (67369480-67369630) | |
| 468-590, gnl|echTel1|scaffold_317951 (33481-33638) | |
| 468-590, gnl|fr1|chrUn (146925330-146925464) | |
| 468-590, gnl|galGal2|chr19 (2417953-2417804) | |
| 468-590, gnl|hg17|chr7 (72088212-72088384) | |
| 468-590, gnl|Hg17|chr7 (74023478-74023356) | |
| 468-590, gnl|loxAfr1|scaffold_86425 (434-616) | |
| 468-590, gnl|mm7|chr5 (133475016-133474842) | |
| 468-590, gnl|Mm7|chr5 (133474979-133474857) | |
| 468-590, gnl|monDom2|scaffold_81 (6375146-6374991) | |
| 468-590, gnl|panTro1|chr6 (75388935-75389107) | |
| 468-590, gnl|rheMac2|chr3 (52236617-52236788) | |
| 468-590, gnl|rn3|chr12 (23444629-23444799) | |
| 468-590, gnl|tetNig1|chr7 (10072936-10073070) | |
| 593-703, gnl|bosTau2|chr25 (30261514-30261624) | |
| 593-703, gnl|canFam2|chr6 (8709051-8708898) | |
| 593-703, gnl|danRer3|chr5 (67371281-67371393) | |
| 593-703, gnl|fr1|chrUn (146925505-146925649) | |
| 593-703, gnl|galGal2|chr19 (2417361-2417219) | |
| 593-703, gnl|hg17|chr7 (72088816-72088963) | |
| 593-703, gnl|Hg17|chr7 (74022890-74022780) | |
| 593-703, gnl|loxAfr1|scaffold_86425 (1034-1186) | |
| 593-703, gnl|mm7|chr5 (133474558-133474399) | |
| 593-703, gnl|Mm7|chr5 (133474523-133474413) | |
| 593-703, gnl|monDom2|scaffold_81 (6373381-6373233) | |
| 593-703, gnl|panTro1|chr6 (75389539-75389686) | |
| 593-703, gnl|rheMac2|chr3 (52237192-52237339) | |
| 593-703, gnl|rn3|chr12 (23445075-23445222) | |
| 593-703, gnl|tetNig1|chr7 (10073146-10073279) | |
| 817-929, gnl|bosTau2|chr25 (30264241-30264353) | |
| 817-929, gnl|Hg17|chr7 (74018430-74018321) | |
| 817-929, gnl|Mm7|chr5 (133471971-133471859) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 241-415, gnl|bosTau2|chr25 (30258272-30258446) | |
| 241-415, gnl|canFam2|chr6 (8712773-8712543) | |
| 241-415, gnl|danRer3|chr5 (67366712-67366919) | |
| 241-415, gnl|echTel1|scaffold_142750 (854-615) | |
| 241-415, gnl|fr1|chrUn (146924689-146924884) | |
| 241-415, gnl|galGal2|chr19 (2418622-2418401) | |
| 241-415, gnl|hg17|chr7 (72084547-72084748) | |
| 241-415, gnl|Hg17|chr7 (74027163-74026992) | |
| 241-415, gnl|mm7|chr5 (133476546-133476319) | |
| 241-415, gnl|Mm7|chr5 (133476501-133476327) | |
| 241-415, gnl|monDom2|scaffold_81 (6379428-6379224) | |
| 241-415, gnl|panTro1|chr6 (75385254-75385455) | |
| 241-415, gnl|rheMac2|chr3 (52232911-52233112) | |
| 241-415, gnl|rn3|chr12 (23443293-23443516) | |
| 241-415, gnl|tetNig1|chr7 (10072321-10072467) | |
| 468-590, gnl|bosTau2|chr25 (30260629-30260751) | |
| 468-590, gnl|canFam2|chr6 (8709659-8709484) | |
| 468-590, gnl|danRer3|chr5 (67369480-67369630) | |
| 468-590, gnl|echTel1|scaffold_317951 (33481-33638) | |
| 468-590, gnl|fr1|chrUn (146925330-146925464) | |
| 468-590, gnl|galGal2|chr19 (2417953-2417804) | |
| 468-590, gnl|hg17|chr7 (72088212-72088384) | |
| 468-590, gnl|Hg17|chr7 (74023478-74023356) | |
| 468-590, gnl|loxAfr1|scaffold_86425 (434-616) | |
| 468-590, gnl|mm7|chr5 (133475016-133474842) | |
| 468-590, gnl|Mm7|chr5 (133474979-133474857) | |
| 468-590, gnl|monDom2|scaffold_81 (6375146-6374991) | |
| 468-590, gnl|panTro1|chr6 (75388935-75389107) | |
| 468-590, gnl|rheMac2|chr3 (52236617-52236788) | |
| 468-590, gnl|rn3|chr12 (23444629-23444799) | |
| 468-590, gnl|tetNig1|chr7 (10072936-10073070) | |
| 593-703, gnl|bosTau2|chr25 (30261514-30261624) | |
| 593-703, gnl|canFam2|chr6 (8709051-8708898) | |
| 593-703, gnl|danRer3|chr5 (67371281-67371393) | |
| 593-703, gnl|fr1|chrUn (146925505-146925649) | |
| 593-703, gnl|galGal2|chr19 (2417361-2417219) | |
| 593-703, gnl|hg17|chr7 (72088816-72088963) | |
| 593-703, gnl|Hg17|chr7 (74022890-74022780) | |
| 593-703, gnl|loxAfr1|scaffold_86425 (1034-1186) | |
| 593-703, gnl|mm7|chr5 (133474558-133474399) | |
| 593-703, gnl|Mm7|chr5 (133474523-133474413) | |
| 593-703, gnl|monDom2|scaffold_81 (6373381-6373233) | |
| 593-703, gnl|panTro1|chr6 (75389539-75389686) | |
| 593-703, gnl|rheMac2|chr3 (52237192-52237339) | |
| 593-703, gnl|rn3|chr12 (23445075-23445222) | |
| 593-703, gnl|tetNig1|chr7 (10073146-10073279) | |
| 817-929, gnl|bosTau2|chr25 (30264241-30264353) | |
| 817-929, gnl|Hg17|chr7 (74018430-74018321) | |
| 817-929, gnl|Mm7|chr5 (133471971-133471859) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.383362) |