Non-Coding RNA Search

Ss1.1-Ova1-OVR010025C02.5

Sequence:


               
               CCGCCGTGGGTGGGCGGGGGGGTAGGGTTTAGAAGGGAGCGCACTTCCGGTGCCCTTTCT
CCAGCAAGCACCTGGGGCTCGGACCCTCGTGTGAAGGGTGCGATCCGTAAACTGGAGCGC
GGTAAAGGCAGGCCGGCACCCGCTTCTGACCTCTGGTGCCGCCGGCCTCAAGATCGGACA
TGGCCCAGAACTTGAAGGACTTAGCGGGACGGCTGCCCTCCGGGCCCCGGGGCATGGGCA
CGGCGCTGAAGCTGCTGCTGGGGGCCGGCGCCGTGGCCTACGGCATCCGCGAGTCGGTGT
TCACCGTGGAAGGCGGGCACAGAGCCATTTTCTTTAATCGGATCGGAGGCGTGCAGCAGG
ACACCATTCTGGCCGAGGGCCTTCACTTCAGGATCCCCTGGTTCCAGTACCCTATCATCT
ATGATATTCGAGCCAGACCCCGAAAAATTTCCTCCCCCACAGGCTCCAAAGACCTGCAGA
TGGTGAACATCTCCCTGCGGGTGCTGTCCCGACCCAACGCCATGGAGCTGCCCAGCATGT
ACCAGCGCCTGGGGCTGGACTATGAGGAGCGAGTGCTGCCCTCCATTGTCAACGAGGTGC
TCAAGAGTGTGGTGGCCAAGTTCAACGCCTCCCAGCTGATCACCCAGCGGGCCCAGGTGT
CCTTGTTGATCCGAAGGGAGCTGACGGAGAGGGCCAAGGACTTCAGCCTCATCCTGGACG
ATGTCGCCATCACTGAGCTGAGCTTCAGCCGGGAGTACACAGCAGCTGTAGAAGCCAAAC
AAGTGGCTCAGCAGGAAGCCCAGCGGGCCCAGTTCTTGGTAGAAAAAGCGAAGCAGGAAC
AGCGGCAAAAGATTGTGCAGGCCGAGGGTGAGGCAGAGGCCGCCAGAATGCTGGGAGAAG
CTCTGAGCAAGAACCCTGGCTACATCAAGCTGCGCAAGATCCGGGCCGCCCAGAACATCT
CCAAGACGATCGCCACGTCACAGAATCGTATCTATCTCACTGCTGATAACCTTGTGCTGA
ACCTACAGGATGAAAGTTTCACCCGGGGCAGCGACAGCCTTATCAAGAGTAAGAAGTGAA
CCTGGTAACCGAGCACTCTGCCACCAGGGAAGAAGTGGATCTGTTTCTCCCCTAGTTTTT
GAGGAGCCAGCCTGGGGTCCAGCACACCCCCACCCTGCCGCCAGTATCATGTGATGGTCC
CTCCACATCTGACCTCCCAACCCTTCTTGAAGAACAAAGACTGAGCATTTTCCAGGGAGT
GACTCCCCCATTGCCAGGGGTGTTGGGGCAGGGTGATTTCTCAGTGATCTCCTAGTGTTG
GTTCCTCCCTCACAGTTGGGAGGCGGATCACCACCACCCCAGGAATTCTCAATAAATTTT
TATTACTTAAGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCCGTGGGTGGGCGGGGGGGTAGGGTTTAGAAGGGAGCGCACTTCCGGTGCCCTTTCT
CCAGCAAGCACCTGGGGCTCGGACCCTCGTGTGAAGGGTGCGATCCGTAAACTGGAGCGC
GGTAAAGGCAGGCCGGCACCCGCTTCTGACCTCTGGTGCCGCCGGCCTCAAGATCGGACA
TGGCCCAGAACTTGAAGGACTTAGCGGGACGGCTGCCCTCCGGGCCCCGGGGCATGGGCA
CGGCGCTGAAGCTGCTGCTGGGGGCCGGCGCCGTGGCCTACGGCATCCGCGAGTCGGTGT
TCACCGTGGAAGGCGGGCACAGAGCCATTTTCTTTAATCGGATCGGAGGCGTGCAGCAGG
ACACCATTCTGGCCGAGGGCCTTCACTTCAGGATCCCCTGGTTCCAGTACCCTATCATCT
ATGATATTCGAGCCAGACCCCGAAAAATTTCCTCCCCCACAGGCTCCAAAGACCTGCAGA
TGGTGAACATCTCCCTGCGGGTGCTGTCCCGACCCAACGCCATGGAGCTGCCCAGCATGT
ACCAGCGCCTGGGGCTGGACTATGAGGAGCGAGTGCTGCCCTCCATTGTCAACGAGGTGC
TCAAGAGTGTGGTGGCCAAGTTCAACGCCTCCCAGCTGATCACCCAGCGGGCCCAGGTGT
CCTTGTTGATCCGAAGGGAGCTGACGGAGAGGGCCAAGGACTTCAGCCTCATCCTGGACG
ATGTCGCCATCACTGAGCTGAGCTTCAGCCGGGAGTACACAGCAGCTGTAGAAGCCAAAC
AAGTGGCTCAGCAGGAAGCCCAGCGGGCCCAGTTCTTGGTAGAAAAAGCGAAGCAGGAAC
AGCGGCAAAAGATTGTGCAGGCCGAGGGTGAGGCAGAGGCCGCCAGAATGCTGGGAGAAG
CTCTGAGCAAGAACCCTGGCTACATCAAGCTGCGCAAGATCCGGGCCGCCCAGAACATCT
CCAAGACGATCGCCACGTCACAGAATCGTATCTATCTCACTGCTGATAACCTTGTGCTGA
ACCTACAGGATGAAAGTTTCACCCGGGGCAGCGACAGCCTTATCAAGAGTAAGAAGTGAA
CCTGGTAACCGAGCACTCTGCCACCAGGGAAGAAGTGGATCTGTTTCTCCCCTAGTTTTT
GAGGAGCCAGCCTGGGGTCCAGCACACCCCCACCCTGCCGCCAGTATCATGTGATGGTCC
CTCCACATCTGACCTCCCAACCCTTCTTGAAGAACAAAGACTGAGCATTTTCCAGGGAGT
GACTCCCCCATTGCCAGGGGTGTTGGGGCAGGGTGATTTCTCAGTGATCTCCTAGTGTTG
GTTCCTCCCTCACAGTTGGGAGGCGGATCACCACCACCCCAGGAATTCTCAATAAATTTT
TATTACTTAAGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5XIH7_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5XIH7_RAT

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               306-883, gnl|bosTau2|chr12 (45798283-45798858)
               

               
               306-883, gnl|Hg17|chr1 (59177456-59178030)
               

               
               306-883, gnl|Mm7|chr15 (6481002-6481576)
               


               
               891-1327, gnl|bosTau2|chr19 (30418544-30418103)
               

               
               891-1327, gnl|Hg17|chr12 (6946672-6944842)
               

               
               891-1327, gnl|Mm7|chr6 (124740585-124741886)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               306-883, gnl|bosTau2|chr12 (45798283-45798858)
               

               
               306-883, gnl|Hg17|chr1 (59177456-59178030)
               

               
               306-883, gnl|Mm7|chr15 (6481002-6481576)
               


               
               891-1327, gnl|bosTau2|chr19 (30418544-30418103)
               

               
               891-1327, gnl|Hg17|chr12 (6946672-6944842)
               

               
               891-1327, gnl|Mm7|chr6 (124740585-124741886)

Expressed library(ies): 33 entry(ies)

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Expressed library(ies): 33 entry(ies)

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               clu (0.598229)
               

               
               csp (0.483559)
               

               
               cli (0.458435)
               

               
               fli (0.405762)
               

               
               col (0.390016)
               

               
               ese (0.379507)
               

               
               eru (0.360144)
               

               
               cag (0.302389)
               

               
               jej (0.296765)
               

               
               che (0.272628)
               

               
               cov (0.264306)
               

               
               jca (0.22792)
               

               
               cty (0.20816)
               

               
               nbm (0.198649)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 33 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.598229)
               

               
               csp (0.483559)
               

               
               cli (0.458435)
               

               
               fli (0.405762)
               

               
               col (0.390016)
               

               
               ese (0.379507)
               

               
               eru (0.360144)
               

               
               cag (0.302389)
               

               
               jej (0.296765)
               

               
               che (0.272628)
               

               
               cov (0.264306)
               

               
               jca (0.22792)
               

               
               cty (0.20816)
               

               
               nbm (0.198649)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               nje (0.16592)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	306-883, gnl\|bosTau2\|chr12 (45798283-45798858)
	306-883, gnl\|Hg17\|chr1 (59177456-59178030)
	306-883, gnl\|Mm7\|chr15 (6481002-6481576)

	891-1327, gnl\|bosTau2\|chr19 (30418544-30418103)
	891-1327, gnl\|Hg17\|chr12 (6946672-6944842)
	891-1327, gnl\|Mm7\|chr6 (124740585-124741886)

	clu (0.598229)
	csp (0.483559)
	cli (0.458435)
	fli (0.405762)
	col (0.390016)
	ese (0.379507)
	eru (0.360144)
	cag (0.302389)
	jej (0.296765)
	che (0.272628)
	cov (0.264306)
	jca (0.22792)
	cty (0.20816)
	nbm (0.198649)
	fty (0.17584)
	ill (0.175593)
	duo (0.172801)
	mcp (0.170648)
	nje (0.16592)
	eli (0.151814)
	lun (0.150489)
	spl (0.143184)
	hyp (0.142837)
	pty (0.142714)
	lnt (0.142308)
	hlv (0.139256)
	ssp (0.13552)
	pla (0.133672)
	eep (0.122564)
	ebs (0.118301)
	med (0.116252)
	ecc (0.115035)
	eje (0.0988338)