Non-Coding RNA Search

Ss1.1-Ova1-OVR010025C09.5

Sequence:


               
               AGTTCGTGCGGGACTCCGGCGCCGACTGGGAGCCTCTGCGGGACCTCCTCCGACCGAGCA
GCCGAGGCACCGCCCCGCGCCCGCCGTCGCGTCCGGACGACTCCTGCACCGCCCAGGGGA
ACGAGCTCCGAGCATCTCGGGGTGCGGCCACTCCTCGGGGCCAGGAGCGTGGAAGCCAAG
TGCTAGGAACCTCCGGACCCGAGCTCAGCCTCTTCCCGGCCCCCGAATCATCATGACCCA
CTTCAACAAGGGCCCTTCCTACGGGCTCTCGGCCGAGGTCAAGAACAAGATCGCCTCCAA
GTATGACCACCAGGCGGAAGAAGATCTTCGCAACTGGATAGAGGAGGTGACAGGCATGAG
CATTGGCACCAGCTTTCAGCTGGGCCTGAAAGATGGCATAATCCTCTGCGAGCTCATAAA
CAAGCTGCAGCCCGGCTCCGTGAAGAAGGTGAACGAGTCCTCATTAAACTGGCCTCAGCT
GGAGAATATTGGTAATTTTATTAAAGCTATTCAGGCTTATGGTATGAAGCCACATGACAT
ATTTGAAGCCAATGATCTTTTTGAGAATGGGAACATGACCCAGGTTCAGACGACGCTGGT
GGCCCTGGCAGGCCTGGCTAAAACAAAAGGATTCCACACCACCATTGACATTGGCGTGAA
GTACGCAGAAAAACAAACAAGACGTTTCGATGAAGGAAAATTAAAAGCCGGCCAGAGTGT
AATTGGCTTGCAGATGGGAACCAACAAATGCGCCAGCCAAGCAGGTATGACAGCCTACGG
GACGCGGAGGCATCTTTATGATCCCAAAATGCAAACCGACAAACCTTTTGATCAGACCAC
GATTAGTCTGCAGATGGGCACCAACAAAGGAGCCAGCCAGGCGGGCATGTTGGCACCAGG
CACCCGGAGAGACATCTACGATCAGAAGCTAACACTACAACCCGTGGACAACTCGACGAT
TTCGCTCCAGATGGGCACCAACAAAGTCGCTTCCCAGAAAGGCATGAGCGTGTACGGGCT
TGGGCGGCAAGTGTACGACCCCAAATACTGCGCTGCTCCCACCGAACCGGTCATTCACAA
CGGAAGCCAAGGAACGGGAACGAATGGGTCGGAAATCAGCGATAGCGATTATCAGGCAGA
GTACCCCGATGAGTATCATGGCGAGTACCCGGATGACTACCCCAGAGATTATCAATACGG
CGACCAGGGCATTGATTATTAGGTTCACGGGGGAGCTCAGCGTGTAGCCCGTTGTCTTAT
TCAGTGAGAACCAAGCTAGCCTTGAGTAAGTTTTTAATCTCGTCTTCCTAAAACACTATT
ATGCTTATTCTACCTAAAGGAAATATTGCCTTACATACATTCCTTTTTCCTTTTTCAGCC
TCTTCCCTAAATAGTTGCCTTCTAGTGCTGTAACAGTTAAATCCTACAGCATAACCGATA
ACTCGCATATGAAGTAAAAAGGAAGACTGTGAAAGGGAGGACTCTTGTACAGTCAATTCT
TTTATTGAAAAAAAAATCTATGCATTTTTACAGTCCTCTACTTAAAACTGGTATTTTCAA
ACAATAGGAAGCGTCCTGGTTTGTTCGTTTTTTTTTTTTTTCTTACAGTTTCGTATCTGG
TTTCTACATGGAAGACTAAACTCATGCTTAGAGTTAAATGTGGTCTTTGCCAGCTAAATT
TAAGATGCAGCATTTTTAGAAATTTACGTATCAATGTTTCTACAGTATTGTTTGCTAATT
TTTAAATAAAGTCCTGATCAGCGTGCATTTGTGATTACACGTGTACTCATTCTCTTACCT
AAGCCGACAAGACCCTTTCTGAGGGGTGTTTCGAAGGAGCGTGTACAAAACCAGCCCGCA
GACGTCGAGGTCTAGGGGTGCGTGTGCTCTTCCTGTTTGTGCCAATGTATCGCTGTAGAG
TTGCTCTGTTTTCTTCCACTGTATTTATTGCTGCATTTCTCAGCATAAACTTATCCCATT
GTATTTTTTATAAATAAATATTTTTTTTGAACATTCACATGAGCCACAGGCTGATTATTT
TCTGGCTTACTTCCAGCTGGGTAGAGTCAGATTTTTTTTTTTTTTTTTTTTTTGGTTAAA
GTACTCTTTCCCAGGTACTGTGGTAAGGTACTTTAACAGTTCTTTACCGAGTCTACACAG
CATGCGCTGAGACCTAGCGCTTGAGGCGGAGGCTCAGAAAAATGAAGGGACCTGGCCTTT
GCACCCAGTAAATGCCAGCCAGGATTCAAACTATTCATTTGACCCTTGCTTATTCCATTG
TGACTCAGCGGCCCCCAATGCAGCCTAAATCCAATCTGGAATACTCTTAAAATCATCCTC
GGGAAACGAGTGGGGGGATTTCATATTCATGTTCTAGGGTGAATAAAGAGTAACCTACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTCGTGCGGGACTCCGGCGCCGACTGGGAGCCTCTGCGGGACCTCCTCCGACCGAGCA
GCCGAGGCACCGCCCCGCGCCCGCCGTCGCGTCCGGACGACTCCTGCACCGCCCAGGGGA
ACGAGCTCCGAGCATCTCGGGGTGCGGCCACTCCTCGGGGCCAGGAGCGTGGAAGCCAAG
TGCTAGGAACCTCCGGACCCGAGCTCAGCCTCTTCCCGGCCCCCGAATCATCATGACCCA
CTTCAACAAGGGCCCTTCCTACGGGCTCTCGGCCGAGGTCAAGAACAAGATCGCCTCCAA
GTATGACCACCAGGCGGAAGAAGATCTTCGCAACTGGATAGAGGAGGTGACAGGCATGAG
CATTGGCACCAGCTTTCAGCTGGGCCTGAAAGATGGCATAATCCTCTGCGAGCTCATAAA
CAAGCTGCAGCCCGGCTCCGTGAAGAAGGTGAACGAGTCCTCATTAAACTGGCCTCAGCT
GGAGAATATTGGTAATTTTATTAAAGCTATTCAGGCTTATGGTATGAAGCCACATGACAT
ATTTGAAGCCAATGATCTTTTTGAGAATGGGAACATGACCCAGGTTCAGACGACGCTGGT
GGCCCTGGCAGGCCTGGCTAAAACAAAAGGATTCCACACCACCATTGACATTGGCGTGAA
GTACGCAGAAAAACAAACAAGACGTTTCGATGAAGGAAAATTAAAAGCCGGCCAGAGTGT
AATTGGCTTGCAGATGGGAACCAACAAATGCGCCAGCCAAGCAGGTATGACAGCCTACGG
GACGCGGAGGCATCTTTATGATCCCAAAATGCAAACCGACAAACCTTTTGATCAGACCAC
GATTAGTCTGCAGATGGGCACCAACAAAGGAGCCAGCCAGGCGGGCATGTTGGCACCAGG
CACCCGGAGAGACATCTACGATCAGAAGCTAACACTACAACCCGTGGACAACTCGACGAT
TTCGCTCCAGATGGGCACCAACAAAGTCGCTTCCCAGAAAGGCATGAGCGTGTACGGGCT
TGGGCGGCAAGTGTACGACCCCAAATACTGCGCTGCTCCCACCGAACCGGTCATTCACAA
CGGAAGCCAAGGAACGGGAACGAATGGGTCGGAAATCAGCGATAGCGATTATCAGGCAGA
GTACCCCGATGAGTATCATGGCGAGTACCCGGATGACTACCCCAGAGATTATCAATACGG
CGACCAGGGCATTGATTATTAGGTTCACGGGGGAGCTCAGCGTGTAGCCCGTTGTCTTAT
TCAGTGAGAACCAAGCTAGCCTTGAGTAAGTTTTTAATCTCGTCTTCCTAAAACACTATT
ATGCTTATTCTACCTAAAGGAAATATTGCCTTACATACATTCCTTTTTCCTTTTTCAGCC
TCTTCCCTAAATAGTTGCCTTCTAGTGCTGTAACAGTTAAATCCTACAGCATAACCGATA
ACTCGCATATGAAGTAAAAAGGAAGACTGTGAAAGGGAGGACTCTTGTACAGTCAATTCT
TTTATTGAAAAAAAAATCTATGCATTTTTACAGTCCTCTACTTAAAACTGGTATTTTCAA
ACAATAGGAAGCGTCCTGGTTTGTTCGTTTTTTTTTTTTTTCTTACAGTTTCGTATCTGG
TTTCTACATGGAAGACTAAACTCATGCTTAGAGTTAAATGTGGTCTTTGCCAGCTAAATT
TAAGATGCAGCATTTTTAGAAATTTACGTATCAATGTTTCTACAGTATTGTTTGCTAATT
TTTAAATAAAGTCCTGATCAGCGTGCATTTGTGATTACACGTGTACTCATTCTCTTACCT
AAGCCGACAAGACCCTTTCTGAGGGGTGTTTCGAAGGAGCGTGTACAAAACCAGCCCGCA
GACGTCGAGGTCTAGGGGTGCGTGTGCTCTTCCTGTTTGTGCCAATGTATCGCTGTAGAG
TTGCTCTGTTTTCTTCCACTGTATTTATTGCTGCATTTCTCAGCATAAACTTATCCCATT
GTATTTTTTATAAATAAATATTTTTTTTGAACATTCACATGAGCCACAGGCTGATTATTT
TCTGGCTTACTTCCAGCTGGGTAGAGTCAGATTTTTTTTTTTTTTTTTTTTTTGGTTAAA
GTACTCTTTCCCAGGTACTGTGGTAAGGTACTTTAACAGTTCTTTACCGAGTCTACACAG
CATGCGCTGAGACCTAGCGCTTGAGGCGGAGGCTCAGAAAAATGAAGGGACCTGGCCTTT
GCACCCAGTAAATGCCAGCCAGGATTCAAACTATTCATTTGACCCTTGCTTATTCCATTG
TGACTCAGCGGCCCCCAATGCAGCCTAAATCCAATCTGGAATACTCTTAAAATCATCCTC
GGGAAACGAGTGGGGGGATTTCATATTCATGTTCTAGGGTGAATAAAGAGTAACCTACTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61809247|ref|XP_584057.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61809247|ref|XP_584057.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               838-957, - strand, RNAz p=0.680359

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               838-957, - strand, RNAz p=0.680359

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-1275, gnl|bosTau2|chr3 (15227264-15225989)
               

               
               1-1275, gnl|Mm7|chr13 (95683153-95684411)
               


               
               236-1054, gnl|bosTau2|chr16 (5073912-5073099)
               

               
               236-1054, gnl|Hg17|chr6 (111286144-111286948)
               

               
               236-1054, gnl|Mm7|chr19 (34324995-34325816)
               


               
               264-778, gnl|bosTau2|chr15 (2467748-2468242)
               

               
               264-778, gnl|Hg17|chr11 (98437484-98438296)
               


               
               1476-2014, gnl|bosTau2|chr19 (4012835-4013340)
               

               
               1476-2014, gnl|Mm7|chr3 (121226461-121226986)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1275, gnl|bosTau2|chr3 (15227264-15225989)
               

               
               1-1275, gnl|Mm7|chr13 (95683153-95684411)
               


               
               236-1054, gnl|bosTau2|chr16 (5073912-5073099)
               

               
               236-1054, gnl|Hg17|chr6 (111286144-111286948)
               

               
               236-1054, gnl|Mm7|chr19 (34324995-34325816)
               


               
               264-778, gnl|bosTau2|chr15 (2467748-2468242)
               

               
               264-778, gnl|Hg17|chr11 (98437484-98438296)
               


               
               1476-2014, gnl|bosTau2|chr19 (4012835-4013340)
               

               
               1476-2014, gnl|Mm7|chr3 (121226461-121226986)

Expressed library(ies): 60 entry(ies)

More info

Expressed library(ies): 60 entry(ies)

Help | Less info


               
               pro (2.04813)
               

               
               cki (1.32188)
               

               
               kid (0.908147)
               

               
               spc (0.906927)
               

               
               ese (0.885516)
               

               
               rec (0.865351)
               

               
               csk (0.844476)
               

               
               gul (0.710353)
               

               
               lyg (0.532411)
               

               
               cov (0.528611)
               

               
               cty (0.5204)
               

               
               bla (0.497389)
               

               
               mgp (0.461361)
               

               
               ece (0.45861)
               

               
               fat (0.442282)
               

               
               liv (0.438853)
               

               
               elu (0.385356)
               

               
               sug (0.381874)
               

               
               tra (0.369276)
               

               
               nep (0.36785)
               

               
               sag (0.36543)
               

               
               sto (0.359648)
               

               
               pgl (0.35545)
               

               
               ebs (0.354904)
               

               
               mcp (0.341297)
               

               
               cut (0.339847)
               

               
               lun (0.300978)
               

               
               eje (0.296501)
               

               
               ski (0.29347)
               

               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               ova (0.258264)
               

               
               thg (0.253582)
               

               
               cly (0.241284)
               

               
               cbe (0.239234)
               

               
               pan (0.23596)
               

               
               jca (0.22792)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               bfe (0.149858)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

Expressed library(ies): 60 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (2.04813)
               

               
               cki (1.32188)
               

               
               kid (0.908147)
               

               
               spc (0.906927)
               

               
               ese (0.885516)
               

               
               rec (0.865351)
               

               
               csk (0.844476)
               

               
               gul (0.710353)
               

               
               lyg (0.532411)
               

               
               cov (0.528611)
               

               
               cty (0.5204)
               

               
               bla (0.497389)
               

               
               mgp (0.461361)
               

               
               ece (0.45861)
               

               
               fat (0.442282)
               

               
               liv (0.438853)
               

               
               elu (0.385356)
               

               
               sug (0.381874)
               

               
               tra (0.369276)
               

               
               nep (0.36785)
               

               
               sag (0.36543)
               

               
               sto (0.359648)
               

               
               pgl (0.35545)
               

               
               ebs (0.354904)
               

               
               mcp (0.341297)
               

               
               cut (0.339847)
               

               
               lun (0.300978)
               

               
               eje (0.296501)
               

               
               ski (0.29347)
               

               
               cte (0.29274)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               ova (0.258264)
               

               
               thg (0.253582)
               

               
               cly (0.241284)
               

               
               cbe (0.239234)
               

               
               pan (0.23596)
               

               
               jca (0.22792)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               bfe (0.149858)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ret (0.128733)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               ldo (0.0970026)

	1-1275, gnl\|bosTau2\|chr3 (15227264-15225989)
	1-1275, gnl\|Mm7\|chr13 (95683153-95684411)

	236-1054, gnl\|bosTau2\|chr16 (5073912-5073099)
	236-1054, gnl\|Hg17\|chr6 (111286144-111286948)
	236-1054, gnl\|Mm7\|chr19 (34324995-34325816)

	264-778, gnl\|bosTau2\|chr15 (2467748-2468242)
	264-778, gnl\|Hg17\|chr11 (98437484-98438296)

	1476-2014, gnl\|bosTau2\|chr19 (4012835-4013340)
	1476-2014, gnl\|Mm7\|chr3 (121226461-121226986)

	pro (2.04813)
	cki (1.32188)
	kid (0.908147)
	spc (0.906927)
	ese (0.885516)
	rec (0.865351)
	csk (0.844476)
	gul (0.710353)
	lyg (0.532411)
	cov (0.528611)
	cty (0.5204)
	bla (0.497389)
	mgp (0.461361)
	ece (0.45861)
	fat (0.442282)
	liv (0.438853)
	elu (0.385356)
	sug (0.381874)
	tra (0.369276)
	nep (0.36785)
	sag (0.36543)
	sto (0.359648)
	pgl (0.35545)
	ebs (0.354904)
	mcp (0.341297)
	cut (0.339847)
	lun (0.300978)
	eje (0.296501)
	ski (0.29347)
	cte (0.29274)
	fce (0.271592)
	ste (0.270416)
	ova (0.258264)
	thg (0.253582)
	cly (0.241284)
	cbe (0.239234)
	pan (0.23596)
	jca (0.22792)
	fli (0.202881)
	aor (0.195274)
	nlu (0.191681)
	cmu (0.186393)
	mgm (0.180343)
	eye (0.170503)
	fhi (0.169578)
	nco (0.161734)
	csp (0.161186)
	cli (0.152812)
	cag (0.151194)
	bfe (0.149858)
	pty (0.142714)
	nca (0.136874)
	pla (0.133672)
	nmm (0.132802)
	ute (0.132784)
	ret (0.128733)
	eep (0.122564)
	clu (0.119646)
	ecc (0.115035)
	ldo (0.0970026)