Ss1.1-Ova1-OVR010026A04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTCTCGCCGAGCGTGCTTCCTGCCGTAGGGACAGCCGAGCCATGGCAGCCCTGCTGAGA CCCGCTCGCTGGCTCCTCCGTGCCAGGGCGGCCAAGAGCCTTCCGCTATCCCTGCGACTC CTCGCGGGTGGCCCGGGCCGGCCGCACGCCGCCTTCTGTCTGCCCACCGGTCGCGCCCGG CCTGTCGCCGGAGGGCTACAGAGCCAAGTCAGGCTATATACTATTGCTGCTGAGAAAAAG AACTATCTTCAGGAGGAGCCTGCTTCTTCTCATAAAAGGAATGCCAGTCAGTTTGATTGG GCTCTAATGAGGCTAGATAATTCTGTCCGAAGAACTGGTCGCATCCCTAAGACTCTTCTA CAAAAAGTCTTTGATAACACGTGCCACTCAGGTAGCCCAGGTAGTAATCAAGCCTTGCTT CTGCTGCGCAGCTGTGGTTCTCTCTTGCCTGAACTAAAGCTATCAGAGAGAATGGAATTT GCTCACAGGATATGGGATGAACTTCAGAAATTGGGTACTGTGTATGATATAAGTCACTAT AATGCATTGCTTAAAGTCTACCTTCAAAATGAGTATAAATTTTCACCAACTGACTTCTTG GCAAAAATGGAGAAAGCGAACATTCAACCAAATCGAGTGACATACCAAAGGTTGATTGCT GCTTATTGTAATGAGGGAGATATTGAAGGTGCCAGCAAGATACTTGGATTTATGAAAACT AAGGATCTTCCCGAGTTGTGGTACGAGGATGAACAGCATTCCCAGATTTCATCTGCCTCG CCTGAACAAGGTAACCTCCAGAAAGAGCTATTGAAGATGAAAGAGGCCGGAATTGAGCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTCTCGCCGAGCGTGCTTCCTGCCGTAGGGACAGCCGAGCCATGGCAGCCCTGCTGAGA CCCGCTCGCTGGCTCCTCCGTGCCAGGGCGGCCAAGAGCCTTCCGCTATCCCTGCGACTC CTCGCGGGTGGCCCGGGCCGGCCGCACGCCGCCTTCTGTCTGCCCACCGGTCGCGCCCGG CCTGTCGCCGGAGGGCTACAGAGCCAAGTCAGGCTATATACTATTGCTGCTGAGAAAAAG AACTATCTTCAGGAGGAGCCTGCTTCTTCTCATAAAAGGAATGCCAGTCAGTTTGATTGG GCTCTAATGAGGCTAGATAATTCTGTCCGAAGAACTGGTCGCATCCCTAAGACTCTTCTA CAAAAAGTCTTTGATAACACGTGCCACTCAGGTAGCCCAGGTAGTAATCAAGCCTTGCTT CTGCTGCGCAGCTGTGGTTCTCTCTTGCCTGAACTAAAGCTATCAGAGAGAATGGAATTT GCTCACAGGATATGGGATGAACTTCAGAAATTGGGTACTGTGTATGATATAAGTCACTAT AATGCATTGCTTAAAGTCTACCTTCAAAATGAGTATAAATTTTCACCAACTGACTTCTTG GCAAAAATGGAGAAAGCGAACATTCAACCAAATCGAGTGACATACCAAAGGTTGATTGCT GCTTATTGTAATGAGGGAGATATTGAAGGTGCCAGCAAGATACTTGGATTTATGAAAACT AAGGATCTTCCCGAGTTGTGGTACGAGGATGAACAGCATTCCCAGATTTCATCTGCCTCG CCTGAACAAGGTAACCTCCAGAAAGAGCTATTGAAGATGAAAGAGGCCGGAATTGAGCCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 231-350, + strand, RNAz p=0.753967 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 231-350, + strand, RNAz p=0.753967 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 191-394, gnl|bosTau2|chr15 (30842432-30842229) | |
| 191-394, gnl|Hg17|chr2 (44121225-44121025) | |
| 191-394, gnl|Mm7|chr17 (83071983-83071786) | |
| 514-638, gnl|bosTau2|chr15 (30836895-30836771) | |
| 514-638, gnl|canFam2|chr10 (49543148-49543283) | |
| 514-638, gnl|danRer3|chr13 (6756126-6756256) | |
| 514-638, gnl|dasNov1|scaffold_5784 (50146-50012) | |
| 514-638, gnl|echTel1|scaffold_312103 (206608-206738) | |
| 514-638, gnl|fr1|chrUn (253102241-253102390) | |
| 514-638, gnl|galGal2|chr3 (21671408-21671538) | |
| 514-638, gnl|hg17|chr2 (44115903-44116037) | |
| 514-638, gnl|Hg17|chr2 (44116067-44115943) | |
| 514-638, gnl|loxAfr1|scaffold_37862 (3403-3261) | |
| 514-638, gnl|mm7|chr17 (83068013-83068148) | |
| 514-638, gnl|Mm7|chr17 (83068178-83068054) | |
| 514-638, gnl|monDom2|scaffold_1 (2602476-2602611) | |
| 514-638, gnl|oryCun1|scaffold_175050 (5150-5285) | |
| 514-638, gnl|panTro1|chr12 (45786566-45786700) | |
| 514-638, gnl|rheMac2|chr13 (44096736-44096872) | |
| 514-638, gnl|rn3|chr6 (8153313-8153446) | |
| 514-638, gnl|tetNig1|chr17 (11006231-11006102) | |
| 514-638, gnl|xenTro1|scaffold_30 (2470680-2470816) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 191-394, gnl|bosTau2|chr15 (30842432-30842229) | |
| 191-394, gnl|Hg17|chr2 (44121225-44121025) | |
| 191-394, gnl|Mm7|chr17 (83071983-83071786) | |
| 514-638, gnl|bosTau2|chr15 (30836895-30836771) | |
| 514-638, gnl|canFam2|chr10 (49543148-49543283) | |
| 514-638, gnl|danRer3|chr13 (6756126-6756256) | |
| 514-638, gnl|dasNov1|scaffold_5784 (50146-50012) | |
| 514-638, gnl|echTel1|scaffold_312103 (206608-206738) | |
| 514-638, gnl|fr1|chrUn (253102241-253102390) | |
| 514-638, gnl|galGal2|chr3 (21671408-21671538) | |
| 514-638, gnl|hg17|chr2 (44115903-44116037) | |
| 514-638, gnl|Hg17|chr2 (44116067-44115943) | |
| 514-638, gnl|loxAfr1|scaffold_37862 (3403-3261) | |
| 514-638, gnl|mm7|chr17 (83068013-83068148) | |
| 514-638, gnl|Mm7|chr17 (83068178-83068054) | |
| 514-638, gnl|monDom2|scaffold_1 (2602476-2602611) | |
| 514-638, gnl|oryCun1|scaffold_175050 (5150-5285) | |
| 514-638, gnl|panTro1|chr12 (45786566-45786700) | |
| 514-638, gnl|rheMac2|chr13 (44096736-44096872) | |
| 514-638, gnl|rn3|chr6 (8153313-8153446) | |
| 514-638, gnl|tetNig1|chr17 (11006231-11006102) | |
| 514-638, gnl|xenTro1|scaffold_30 (2470680-2470816) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) |