Non-Coding RNA Search

Ss1.1-Ova1-OVR010026B01.5

Sequence:


               
               AGCACTGCAACAAAAAGGCTGTTTTCTCTCGGATCTCCAAATTTAAAAGCACAAGGAGTG
ATTGTACCACACAAAGTAAAGTCAAACCTTAAAGGACTCCCTGCCAAGTAACAGTTGTCC
CGTACCATCCTGATTTATTGTCACTGTTGCTAACGTTCCGGCTCAGAGGAGACGCTCCTC
CCAAAATGAGTGTGGCGATGATTTTAGGAGGCGCCGTGGGGCCCCGGGCCCCGGCTCGGG
CGCCCCCTTCCGGCCGCGGGCTCCGCGCCCCGGCCGCCCTGGTGCACGTTTGGATTTGGA
GGATCCCTGCCGCGCGTTCTCTGTGCGTTTTTGCTCTTTGCTGTCTTCTCCTGCCTGATA
ACCAGCAACTTGGGACCATCCTTCCCTCCCACTTTGACGCCCGCCTCTTTCCATGTTCAT
GTTTCCCAGCTGCAAAAACCTGACTAATTTAAACCGATGCCGGTTTCTGCCAAAGACGGA
CACGCATAACGTTCGTTCCCCCTCGCTCGCCACGCCCCGTGGAATGGGAGCCTCTGCCGG
ACCTCTGCCGGGTCTTCTTTTGTACTGTTCCCTCTGCTCTTGATTTGTGTAAATAGCACC
TGGATAGCAAGTTATAATGCTTATTTATTTGAAGATGCTTTGGTTTTGTCGTGGGGTTGT
TGTTTTTGTTTTTGGGGTTTTTTTGCATTAAGCACATTCATCTTCAACTGGGGCTTCCCC
TGGGGCCAGAGGGGGAAGGTGTTGGTGGTGATTCCGAGGTATGAAAGCTTCCTCACAAGG
GGAATCGTCATGTCTGCCCAGATCAAGCCCCCTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCACTGCAACAAAAAGGCTGTTTTCTCTCGGATCTCCAAATTTAAAAGCACAAGGAGTG
ATTGTACCACACAAAGTAAAGTCAAACCTTAAAGGACTCCCTGCCAAGTAACAGTTGTCC
CGTACCATCCTGATTTATTGTCACTGTTGCTAACGTTCCGGCTCAGAGGAGACGCTCCTC
CCAAAATGAGTGTGGCGATGATTTTAGGAGGCGCCGTGGGGCCCCGGGCCCCGGCTCGGG
CGCCCCCTTCCGGCCGCGGGCTCCGCGCCCCGGCCGCCCTGGTGCACGTTTGGATTTGGA
GGATCCCTGCCGCGCGTTCTCTGTGCGTTTTTGCTCTTTGCTGTCTTCTCCTGCCTGATA
ACCAGCAACTTGGGACCATCCTTCCCTCCCACTTTGACGCCCGCCTCTTTCCATGTTCAT
GTTTCCCAGCTGCAAAAACCTGACTAATTTAAACCGATGCCGGTTTCTGCCAAAGACGGA
CACGCATAACGTTCGTTCCCCCTCGCTCGCCACGCCCCGTGGAATGGGAGCCTCTGCCGG
ACCTCTGCCGGGTCTTCTTTTGTACTGTTCCCTCTGCTCTTGATTTGTGTAAATAGCACC
TGGATAGCAAGTTATAATGCTTATTTATTTGAAGATGCTTTGGTTTTGTCGTGGGGTTGT
TGTTTTTGTTTTTGGGGTTTTTTTGCATTAAGCACATTCATCTTCAACTGGGGCTTCCCC
TGGGGCCAGAGGGGGAAGGTGTTGGTGGTGATTCCGAGGTATGAAAGCTTCCTCACAAGG
GGAATCGTCATGTCTGCCCAGATCAAGCCCCCTCCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|21359791|gb|AAM49615.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|21359791|gb|AAM49615.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               81-199, + strand, RNAz p=0.754253

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-199, + strand, RNAz p=0.754253

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

Help | Less info


               
               1-647, gnl|bosTau2|chr12 (15018439-15017803)
               

               
               1-647, gnl|canFam2|chr25 (14318666-14317725)
               

               
               1-647, gnl|dasNov1|scaffold_85471 (11112-10220)
               

               
               1-647, gnl|echTel1|scaffold_319521 (46997-47960)
               

               
               1-647, gnl|galGal2|chr1 (167915996-167915154)
               

               
               1-647, gnl|hg17|chr13 (27860866-27861792)
               

               
               1-647, gnl|Hg17|chr13 (27861929-27861287)
               

               
               1-647, gnl|loxAfr1|scaffold_24 (27351-26445)
               

               
               1-647, gnl|mm7|chr5 (146532568-146533487)
               

               
               1-647, gnl|Mm7|chr5 (146533625-146532964)
               

               
               1-647, gnl|monDom2|scaffold_15 (37675357-37676233)
               

               
               1-647, gnl|oryCun1|scaffold_198574 (124050-124967)
               

               
               1-647, gnl|panTro1|chr14 (27043039-27043962)
               

               
               1-647, gnl|rheMac2|chr17 (8029723-8030653)
               

               
               1-647, gnl|rn3|chr12 (7988226-7987315)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-647, gnl|bosTau2|chr12 (15018439-15017803)
               

               
               1-647, gnl|canFam2|chr25 (14318666-14317725)
               

               
               1-647, gnl|dasNov1|scaffold_85471 (11112-10220)
               

               
               1-647, gnl|echTel1|scaffold_319521 (46997-47960)
               

               
               1-647, gnl|galGal2|chr1 (167915996-167915154)
               

               
               1-647, gnl|hg17|chr13 (27860866-27861792)
               

               
               1-647, gnl|Hg17|chr13 (27861929-27861287)
               

               
               1-647, gnl|loxAfr1|scaffold_24 (27351-26445)
               

               
               1-647, gnl|mm7|chr5 (146532568-146533487)
               

               
               1-647, gnl|Mm7|chr5 (146533625-146532964)
               

               
               1-647, gnl|monDom2|scaffold_15 (37675357-37676233)
               

               
               1-647, gnl|oryCun1|scaffold_198574 (124050-124967)
               

               
               1-647, gnl|panTro1|chr14 (27043039-27043962)
               

               
               1-647, gnl|rheMac2|chr17 (8029723-8030653)
               

               
               1-647, gnl|rn3|chr12 (7988226-7987315)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               pla (0.133672)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-647, gnl\|bosTau2\|chr12 (15018439-15017803)
	1-647, gnl\|canFam2\|chr25 (14318666-14317725)
	1-647, gnl\|dasNov1\|scaffold_85471 (11112-10220)
	1-647, gnl\|echTel1\|scaffold_319521 (46997-47960)
	1-647, gnl\|galGal2\|chr1 (167915996-167915154)
	1-647, gnl\|hg17\|chr13 (27860866-27861792)
	1-647, gnl\|Hg17\|chr13 (27861929-27861287)
	1-647, gnl\|loxAfr1\|scaffold_24 (27351-26445)
	1-647, gnl\|mm7\|chr5 (146532568-146533487)
	1-647, gnl\|Mm7\|chr5 (146533625-146532964)
	1-647, gnl\|monDom2\|scaffold_15 (37675357-37676233)
	1-647, gnl\|oryCun1\|scaffold_198574 (124050-124967)
	1-647, gnl\|panTro1\|chr14 (27043039-27043962)
	1-647, gnl\|rheMac2\|chr17 (8029723-8030653)
	1-647, gnl\|rn3\|chr12 (7988226-7987315)