Ss1.1-Ova1-OVR010027B11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAGCACCTGCTGCCTGCCAGCTACTGCGACCTGCTGCACAAGGCCGCTGCCCACCTGGG CTGCTGGCAGAAGGTGGACCCAGCGCTGTGTTCCAACGTGCTGCAGCACCCGTGGACTGA AGAGTGCATGTGGCCACAAGGCGTGCTGGTGAAGCACAGCAAGAACGTCTACAAAGCAGT GGGCCACTACAACGTGGCCATCCCCTCCGACGTCTCTCACTTCCGTTTCCACTTCTTTTT CAGCAAACCCCTGCGGATCCTCAACATCCTTTTGCTGCTGGAGGGCGCGGTCATCGTCTA CCAGCTGTACTCCTTAATGTCCTCTGAAAAGTGGCACCAGACCATCTCACTGGCACTCAT CCTCTTCAGCAACTACTACGCCTTCTTCAAGCTGCTGCGGGACCGCCTGGTACTGGGCAA GGCCTACTCGTACTCTGCCAACCCCCAGAGGGACCTAGACCACCGGTTCTCCTGAGCCCC AGGGCGACCCCAGGGACCACATCCAGGCTTCAGCCAGGGGCTCTCTGGGAGGGGGCTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAGCACCTGCTGCCTGCCAGCTACTGCGACCTGCTGCACAAGGCCGCTGCCCACCTGGG CTGCTGGCAGAAGGTGGACCCAGCGCTGTGTTCCAACGTGCTGCAGCACCCGTGGACTGA AGAGTGCATGTGGCCACAAGGCGTGCTGGTGAAGCACAGCAAGAACGTCTACAAAGCAGT GGGCCACTACAACGTGGCCATCCCCTCCGACGTCTCTCACTTCCGTTTCCACTTCTTTTT CAGCAAACCCCTGCGGATCCTCAACATCCTTTTGCTGCTGGAGGGCGCGGTCATCGTCTA CCAGCTGTACTCCTTAATGTCCTCTGAAAAGTGGCACCAGACCATCTCACTGGCACTCAT CCTCTTCAGCAACTACTACGCCTTCTTCAAGCTGCTGCGGGACCGCCTGGTACTGGGCAA GGCCTACTCGTACTCTGCCAACCCCCAGAGGGACCTAGACCACCGGTTCTCCTGAGCCCC AGGGCGACCCCAGGGACCACATCCAGGCTTCAGCCAGGGGCTCTCTGGGAGGGGGCTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-114, - strand, RNAz p=0.955307 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-114, - strand, RNAz p=0.955307 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-114, gnl|bosTau2|chr2 (73404850-73404963) | |
| 1-114, gnl|Hg17|chr1 (32229555-32229668) | |
| 1-114, gnl|Mm7|chr4 (129129069-129128956) | |
| 233-495, gnl|bosTau2|chr2 (73410068-73410329) | |
| 233-495, gnl|canFam2|chr2 (71973618-71973395) | |
| 233-495, gnl|danRer3|chr13 (34444726-34444503) | |
| 233-495, gnl|dasNov1|scaffold_6342 (10659-10446) | |
| 233-495, gnl|echTel1|scaffold_318108 (60545-60768) | |
| 233-495, gnl|fr1|chrUn (59901225-59901430) | |
| 233-495, gnl|galGal2|chr23 (4552297-4552515) | |
| 233-495, gnl|hg17|chr1 (32237115-32237338) | |
| 233-495, gnl|Hg17|chr1 (32237125-32237411) | |
| 233-495, gnl|loxAfr1|scaffold_40547 (19389-19612) | |
| 233-495, gnl|mm7|chr4 (129121467-129121244) | |
| 233-495, gnl|Mm7|chr4 (129121455-129121169) | |
| 233-495, gnl|monDom2|scaffold_43 (7696643-7696424) | |
| 233-495, gnl|oryCun1|scaffold_179902 (1631-1408) | |
| 233-495, gnl|panTro1|chr1 (32996029-32996252) | |
| 233-495, gnl|rheMac2|chr1 (34856852-34857077) | |
| 233-495, gnl|rn3|chr5 (148825313-148825090) | |
| 233-495, gnl|tetNig1|chr10 (3714767-3714972) | |
| 233-495, gnl|xenTro1|scaffold_523 (637343-637129) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-114, gnl|bosTau2|chr2 (73404850-73404963) | |
| 1-114, gnl|Hg17|chr1 (32229555-32229668) | |
| 1-114, gnl|Mm7|chr4 (129129069-129128956) | |
| 233-495, gnl|bosTau2|chr2 (73410068-73410329) | |
| 233-495, gnl|canFam2|chr2 (71973618-71973395) | |
| 233-495, gnl|danRer3|chr13 (34444726-34444503) | |
| 233-495, gnl|dasNov1|scaffold_6342 (10659-10446) | |
| 233-495, gnl|echTel1|scaffold_318108 (60545-60768) | |
| 233-495, gnl|fr1|chrUn (59901225-59901430) | |
| 233-495, gnl|galGal2|chr23 (4552297-4552515) | |
| 233-495, gnl|hg17|chr1 (32237115-32237338) | |
| 233-495, gnl|Hg17|chr1 (32237125-32237411) | |
| 233-495, gnl|loxAfr1|scaffold_40547 (19389-19612) | |
| 233-495, gnl|mm7|chr4 (129121467-129121244) | |
| 233-495, gnl|Mm7|chr4 (129121455-129121169) | |
| 233-495, gnl|monDom2|scaffold_43 (7696643-7696424) | |
| 233-495, gnl|oryCun1|scaffold_179902 (1631-1408) | |
| 233-495, gnl|panTro1|chr1 (32996029-32996252) | |
| 233-495, gnl|rheMac2|chr1 (34856852-34857077) | |
| 233-495, gnl|rn3|chr5 (148825313-148825090) | |
| 233-495, gnl|tetNig1|chr10 (3714767-3714972) | |
| 233-495, gnl|xenTro1|scaffold_523 (637343-637129) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ece (0.229305) | |
| sin (0.174948) | |
| eep (0.122564) | |
| pgl (0.118483) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| sin (0.174948) | |
| eep (0.122564) | |
| pgl (0.118483) |