Non-Coding RNA Search

Ss1.1-Ova1-OVR010029A02.5.5

Sequence:


               
               TTTTTTTTTCATCTGCACTATGCTGTTTATTGTCACATTACCCATGGGACAGGGGCGGAC
AGGGAGGGGAGCCTCCAGGCGGAGAGGCGGAAGGAAAGGGGAGGTGGGAACTCTGCCTTC
CTCCAGGCTGGTGCCTGTGGGAGCTTGGCCACCAGCGGGACACCCTTAGATGCAGGCACA
GTGCTGGGTGAGAAGGTTGGGCACTGTCTCGTACTTGAAAGAGTAACCTCCATCCGAGGT
GGTGCGAACGCGTAGGGACCTCATGGTCCCCGGGAGAGCAGCGCAGCAGGGCTGAGCCCC
TGGCACCAACAACAGGGGCTGGACAGGGGTAGGGGGGGCCCCAGGGACAGACAGGGGCAG
GTTGGGCAGGGTCGGCAGCCCGCAGCCCCCGTGACAGTAGTGGAAGATGAAACTGGGAGG
GTGCACGATCCACCGGTCCCAGCCCAGCTCCTGGAAGGAGATGTTGAGGGAAGCTCTGTG
GCAGTCGGCGTGCACAGCGGGTTCCTCCGGGGGCCTCTGCAGCAGGCGCAGCGCGGCGGG
GGACCAAGGCCAGGGCAGAGGGGCGGTGGAGCGTCGGGCCCTCTCCCCTCCGCTGGGTGG
CCTGGCCCGAGTGTGGGCCACCAGGAAGGGGGTGGCCTCGGGCCGGGCTGAGCAGGAACA
GAGAGGACAGCGCAGCAGCAGCACCAGGACTGGGTGGGTCAACAAAGGGAGGGCAGAGGC
GGCCAGGTGCAGCACAGCCCAGCGAGGGGGTGCCTGGCCTAGTGACATGGGCACAGCCAC
AGGACCCCTGGATGACAGTGCCAACAGGTCCAGCAGGGGCCCAGAGCTATTGGCGGCTGC
CATTCCCTGTCTGTCCAGTCCCGTGTGGAACCACAGCTGAGCTGAAGTCACCTGGCGGCT
GCGTGTGTGCTGGGACGGCCGGAATACATATGTGAAGAGGCCCTCCTCAGCCTCCCGGGC
CAGCTCTCCAGCAGCTGGCTCGTCCCCACAGCGGGCACCTGTAGCCGGGAAAAGGATGGC
CTGGGAGACATCCTCCTCCTCGGGCTCAGAGCCCCTGCGCATGAAGCCCCCCACAGCATG
TCTTCGGGGCAGACGCCTGACTCCAGGATCCCCACCTTCCCCAGTCACTGCCGGGGGTCC
CAAGGCATCCAGGAACAGAGCCCTCACCTTGGCCAGGACAAGCTCCCGGTCCAGCTCCGG
GCCCTGGCAGCCATGCCCACTCCGTGGGGCCAACAGCAAGAGGAGCAGCTGAGGCCACAT
AGCTCACCTGGCCCTGCCAACGGTGAACCCACACCCAGCCCTGTGCCCCTTCTGTCAGGG
TCTGCCCAGGGCCTCCCCAATCTCCCCTCCCCATCCCACCAGCCGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTCATCTGCACTATGCTGTTTATTGTCACATTACCCATGGGACAGGGGCGGAC
AGGGAGGGGAGCCTCCAGGCGGAGAGGCGGAAGGAAAGGGGAGGTGGGAACTCTGCCTTC
CTCCAGGCTGGTGCCTGTGGGAGCTTGGCCACCAGCGGGACACCCTTAGATGCAGGCACA
GTGCTGGGTGAGAAGGTTGGGCACTGTCTCGTACTTGAAAGAGTAACCTCCATCCGAGGT
GGTGCGAACGCGTAGGGACCTCATGGTCCCCGGGAGAGCAGCGCAGCAGGGCTGAGCCCC
TGGCACCAACAACAGGGGCTGGACAGGGGTAGGGGGGGCCCCAGGGACAGACAGGGGCAG
GTTGGGCAGGGTCGGCAGCCCGCAGCCCCCGTGACAGTAGTGGAAGATGAAACTGGGAGG
GTGCACGATCCACCGGTCCCAGCCCAGCTCCTGGAAGGAGATGTTGAGGGAAGCTCTGTG
GCAGTCGGCGTGCACAGCGGGTTCCTCCGGGGGCCTCTGCAGCAGGCGCAGCGCGGCGGG
GGACCAAGGCCAGGGCAGAGGGGCGGTGGAGCGTCGGGCCCTCTCCCCTCCGCTGGGTGG
CCTGGCCCGAGTGTGGGCCACCAGGAAGGGGGTGGCCTCGGGCCGGGCTGAGCAGGAACA
GAGAGGACAGCGCAGCAGCAGCACCAGGACTGGGTGGGTCAACAAAGGGAGGGCAGAGGC
GGCCAGGTGCAGCACAGCCCAGCGAGGGGGTGCCTGGCCTAGTGACATGGGCACAGCCAC
AGGACCCCTGGATGACAGTGCCAACAGGTCCAGCAGGGGCCCAGAGCTATTGGCGGCTGC
CATTCCCTGTCTGTCCAGTCCCGTGTGGAACCACAGCTGAGCTGAAGTCACCTGGCGGCT
GCGTGTGTGCTGGGACGGCCGGAATACATATGTGAAGAGGCCCTCCTCAGCCTCCCGGGC
CAGCTCTCCAGCAGCTGGCTCGTCCCCACAGCGGGCACCTGTAGCCGGGAAAAGGATGGC
CTGGGAGACATCCTCCTCCTCGGGCTCAGAGCCCCTGCGCATGAAGCCCCCCACAGCATG
TCTTCGGGGCAGACGCCTGACTCCAGGATCCCCACCTTCCCCAGTCACTGCCGGGGGTCC
CAAGGCATCCAGGAACAGAGCCCTCACCTTGGCCAGGACAAGCTCCCGGTCCAGCTCCGG
GCCCTGGCAGCCATGCCCACTCCGTGGGGCCAACAGCAAGAGGAGCAGCTGAGGCCACAT
AGCTCACCTGGCCCTGCCAACGGTGAACCCACACCCAGCCCTGTGCCCCTTCTGTCAGGG
TCTGCCCAGGGCCTCCCCAATCTCCCCTCCCCATCCCACCAGCCGCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               INHA_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               INHA_PIG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               193-312, + strand, RNAz p=0.804539
               

               
               793-912, - strand, RNAz p=0.54502

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               193-312, + strand, RNAz p=0.804539
               

               
               793-912, - strand, RNAz p=0.54502

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               153-1019, gnl|bosTau2|chr2 (64325080-64325934)
               

               
               153-1019, gnl|Hg17|chr2 (220265815-220264899)
               

               
               153-1019, gnl|Mm7|chr1 (75736526-75735505)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               153-1019, gnl|bosTau2|chr2 (64325080-64325934)
               

               
               153-1019, gnl|Hg17|chr2 (220265815-220264899)
               

               
               153-1019, gnl|Mm7|chr1 (75736526-75735505)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cov (0.528611)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.528611)

	193-312, + strand, RNAz p=0.804539
	793-912, - strand, RNAz p=0.54502

	153-1019, gnl\|bosTau2\|chr2 (64325080-64325934)
	153-1019, gnl\|Hg17\|chr2 (220265815-220264899)
	153-1019, gnl\|Mm7\|chr1 (75736526-75735505)