Non-Coding RNA Search

Ss1.1-Ova1-OVR010029C02.5

Sequence:


               
               CGCGCATCAGGTGGAAGAAGACCACCTGTTTGAAAAAACGGAAGTCAACTTTTGGGCTGA
GACCCTGATCTTCGTGAAATACCTCTACAAGCACCTCTCCCGCCTCCTCTCCACGTCCAG
CTGGTGTCCCCTGCGCCCCGAGTGGCTCCATCGTCTTCAGAGGACAGCGTCCGAGCAGTG
CCACCTCCTCTCCCAGCTCTTCAGAGAGCTGCCACCAACGGCTGAGTTTTTGAAGACGGC
AGAGTTTACGAGGCTGCGCATCCTGGAGGAAAGGACTCTGGCTTGCCTGAGGCTGCTGGC
CTTTCTGGAAGAAAAGGACGGGGAAGGCGTCCTAATTCTGGATGCTTTGGACTCTCCTGC
AGCAGCGAATCCGTTAACCCTTCCAAGAACAGAAAGGGCTTGTTGAAGAACGAAGACTTG
TTGGCCGGGGGTGGGGGGGGGGGTGGGCGCCTGAGGTATTCCCCCACTAAGTCTTCGGGA
AGCTCGTTAAACATAAATTCGAGAATCTTCTCCCCGTCACACCTCCCCCACCTCTGTGAG
TCTAGTCTCCTTTCCTACAGAGGAATTTTTCTTCAGTTCCGTCATTCAAGGCAGCCTCGT
TTATTGCAGCTACTGTAGGAAGTGAGGCTACCACGTGGAGTATTTACTCTGTTCCCAGGT
GCAGGCCACCTGCAGGCCTGACTTAGGCTTTCTCATCCCCCAGGACCTCCGACTATCCAA
CCATAGCCAGCCTGCATTTTCTCTGAGTTGATTACACAGAATGGGGTTTTAAGACATGAT
TCCCCATCACCACCCCCTTTTTTTTGGCTGGACGTAGAAGCTGATTTAGTTGGCAAACAG
CCCATTTGGTCAGCATTCCAAATTTTATTCCATTTTTAGCTAAGGCAAGAATATATATTC
CAAACGTTGGGTCCTGGGAGATTAAGGATCAGCTTCATACAAGTAATTTTTTTACTGTCT
GCATGTTTAAGTCCTTCAGTGACCTACGTATGCAATCCTAATTAATAAAAGACCCATTAA
GAGCTCCAACCCCCCACCCCCCATTATTAGGAAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGCATCAGGTGGAAGAAGACCACCTGTTTGAAAAAACGGAAGTCAACTTTTGGGCTGA
GACCCTGATCTTCGTGAAATACCTCTACAAGCACCTCTCCCGCCTCCTCTCCACGTCCAG
CTGGTGTCCCCTGCGCCCCGAGTGGCTCCATCGTCTTCAGAGGACAGCGTCCGAGCAGTG
CCACCTCCTCTCCCAGCTCTTCAGAGAGCTGCCACCAACGGCTGAGTTTTTGAAGACGGC
AGAGTTTACGAGGCTGCGCATCCTGGAGGAAAGGACTCTGGCTTGCCTGAGGCTGCTGGC
CTTTCTGGAAGAAAAGGACGGGGAAGGCGTCCTAATTCTGGATGCTTTGGACTCTCCTGC
AGCAGCGAATCCGTTAACCCTTCCAAGAACAGAAAGGGCTTGTTGAAGAACGAAGACTTG
TTGGCCGGGGGTGGGGGGGGGGGTGGGCGCCTGAGGTATTCCCCCACTAAGTCTTCGGGA
AGCTCGTTAAACATAAATTCGAGAATCTTCTCCCCGTCACACCTCCCCCACCTCTGTGAG
TCTAGTCTCCTTTCCTACAGAGGAATTTTTCTTCAGTTCCGTCATTCAAGGCAGCCTCGT
TTATTGCAGCTACTGTAGGAAGTGAGGCTACCACGTGGAGTATTTACTCTGTTCCCAGGT
GCAGGCCACCTGCAGGCCTGACTTAGGCTTTCTCATCCCCCAGGACCTCCGACTATCCAA
CCATAGCCAGCCTGCATTTTCTCTGAGTTGATTACACAGAATGGGGTTTTAAGACATGAT
TCCCCATCACCACCCCCTTTTTTTTGGCTGGACGTAGAAGCTGATTTAGTTGGCAAACAG
CCCATTTGGTCAGCATTCCAAATTTTATTCCATTTTTAGCTAAGGCAAGAATATATATTC
CAAACGTTGGGTCCTGGGAGATTAAGGATCAGCTTCATACAAGTAATTTTTTTACTGTCT
GCATGTTTAAGTCCTTCAGTGACCTACGTATGCAATCCTAATTAATAAAAGACCCATTAA
GAGCTCCAACCCCCCACCCCCCATTATTAGGAAACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61861606|ref|XP_589853.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61861606|ref|XP_589853.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-1046, gnl|bosTau2|chr11 (22540068-22539043)
               

               
               7-1046, gnl|Hg17|chr2 (43370137-43369110)
               

               
               7-1046, gnl|Mm7|chr17 (82486782-82485793)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-1046, gnl|bosTau2|chr11 (22540068-22539043)
               

               
               7-1046, gnl|Hg17|chr2 (43370137-43369110)
               

               
               7-1046, gnl|Mm7|chr17 (82486782-82485793)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               isp (0.150376)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               isp (0.150376)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)

	7-1046, gnl\|bosTau2\|chr11 (22540068-22539043)
	7-1046, gnl\|Hg17\|chr2 (43370137-43369110)
	7-1046, gnl\|Mm7\|chr17 (82486782-82485793)

	nms (0.213858)
	fcc (0.197785)
	isp (0.150376)
	pty (0.142714)
	pla (0.133672)
	nmm (0.132802)
	eru (0.120048)