Non-Coding RNA Search

Ss1.1-Ova1-OVR010029G07.5

Sequence:


               
               ATTCAAGCGCGCCCCCTTTGGCGCGAGAGCCAGGCCCGCGACCGCAGTTTTCTGAGCGCG
CTGAAGCCGGGGGCACTCTCTCGCGCGTACCCAGCGGCAGCTTTTTCATGCTGTGATGTG
CTTGAGATCCAGTCGACAGTGAGAGACCCGGCTGGAAAGGTCCGACCTTGCTCAGCATCA
CAGGCTCAGACCTGGCCTGTGAGGGGAGAAGCCTGAGAGAAGAGCCCAGAGCGGGGTTGG
GGCTGCAGTGAAGCGACGCTGACGCTCAGAGAACTGCTGGGAGGCGGTGGCGCGAGGTGG
GACCCAGATGCTGGAGGAAGAGCCACCTTCTCCAGACCTTATGCTTCCCCAAGAGGAAGG
CACGGAAGAGGAAGGAATGGCAGCTGGTCTCCTCACAGCTGGGCCCCAAGACTTCCAGTC
TCTGAACCTGGCGTGAACGCCCAGTTGGAACAAAGGGAAAGCTCCTGGATGCTGGAGAGA
GAAGGCCTAAGGGCTGCCTGCCCAGACTGGAAGATTGTATCTGAATCACCACCTGAGCAA
GACATTTCTGAAGACTCATTCCAAGACCCAAGTGTAGACTCTGGGGAGTCAGATCACAGG
AGCAGTGAACTGGGGAAGGGCTTCAGTCTGCGACCAGTGCTTTCGCCACAGCAGAGAGTT
CCTACAGAAGTGAGACCCCGTAAATGTGAAACACACACGGAGAGCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCAAGCGCGCCCCCTTTGGCGCGAGAGCCAGGCCCGCGACCGCAGTTTTCTGAGCGCG
CTGAAGCCGGGGGCACTCTCTCGCGCGTACCCAGCGGCAGCTTTTTCATGCTGTGATGTG
CTTGAGATCCAGTCGACAGTGAGAGACCCGGCTGGAAAGGTCCGACCTTGCTCAGCATCA
CAGGCTCAGACCTGGCCTGTGAGGGGAGAAGCCTGAGAGAAGAGCCCAGAGCGGGGTTGG
GGCTGCAGTGAAGCGACGCTGACGCTCAGAGAACTGCTGGGAGGCGGTGGCGCGAGGTGG
GACCCAGATGCTGGAGGAAGAGCCACCTTCTCCAGACCTTATGCTTCCCCAAGAGGAAGG
CACGGAAGAGGAAGGAATGGCAGCTGGTCTCCTCACAGCTGGGCCCCAAGACTTCCAGTC
TCTGAACCTGGCGTGAACGCCCAGTTGGAACAAAGGGAAAGCTCCTGGATGCTGGAGAGA
GAAGGCCTAAGGGCTGCCTGCCCAGACTGGAAGATTGTATCTGAATCACCACCTGAGCAA
GACATTTCTGAAGACTCATTCCAAGACCCAAGTGTAGACTCTGGGGAGTCAGATCACAGG
AGCAGTGAACTGGGGAAGGGCTTCAGTCTGCGACCAGTGCTTTCGCCACAGCAGAGAGTT
CCTACAGAAGTGAGACCCCGTAAATGTGAAACACACACGGAGAGCTTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               227-320, + strand, RNAz p=0.705213

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               227-320, + strand, RNAz p=0.705213

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_007135, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_007135, +

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               135-320, gnl|bosTau2|chr11 (77781772-77781588)
               

               
               135-320, gnl|Hg17|chr9 (127266409-127266633)
               


               
               503-707, gnl|bosTau2|chr11 (74555350-74555140)
               

               
               503-707, gnl|Hg17|chr9 (127285859-127286069)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               135-320, gnl|bosTau2|chr11 (77781772-77781588)
               

               
               135-320, gnl|Hg17|chr9 (127266409-127266633)
               


               
               503-707, gnl|bosTau2|chr11 (74555350-74555140)
               

               
               503-707, gnl|Hg17|chr9 (127285859-127286069)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nep (0.183925)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

	135-320, gnl\|bosTau2\|chr11 (77781772-77781588)
	135-320, gnl\|Hg17\|chr9 (127266409-127266633)

	503-707, gnl\|bosTau2\|chr11 (74555350-74555140)
	503-707, gnl\|Hg17\|chr9 (127285859-127286069)