Non-Coding RNA Search

Ss1.1-Ova1-OVR010030C08.5

Sequence:


               
               TTGCTTGGGGCCAAGACGCCCCAGTCCTGCCCCTTCTACGGGTGGTGGGTGGGTGATGTG
GCAGGGGCTGAGCTCCCAGGGTCAGAGGCCCGGCCTGACCCCTCTGTGTGCCCCCTCTCC
CCGCCAGGCGCTGTTCCCCATCTGAGAGGCTCTCCGTGCAGGCGATGGGACGAGATAGCA
AAGTGCCTGAGCCCGGGCAGCAGGGCTGCGACTTCCGGCTGAACCCCGCGCCTCCAGAGG
TCCCTCTGTAGGGTCTTTCTTGGGATGGTGATCTGCTCCTGCTTTTCTGTTCTGGGCCGT
AGGTCCAGGGCCCGACACCCCCTCCCCACCCCCAAAGCCCTGGCACTAAAACTTTAGACT
CCAGGCACTCACTCTGTCCCCCTAGAAACCCCTCCCCGTCTCCTCCCCGGCCGCCCTTCT
CCAGCAGCTGGGCCCCTTGGGGCCTTGGGTTGCTTCTCTGGCTCTGATTATGTCATAGAA
CTCCACCCAACCAACTGTGCTGAGCCCCCAGGGTCTCCAGGCCCCAGGTTCAAGGCCCAA
AGACTCAGAATCCAAAGCTTATCTTGAGAAGTTCAGGGATCGTCCGGGGAGATGGGGCGG
AGATGCGGAGAGCGAGTCCCCCGCTCCGGGACACTGCCTGCTCCTCTCTCCTGGATGTTC
AATGGCTTTGGCCCCCTCCCAGGGGAGCTCGGGGACAGCTCCCTCCTCGCCCCTCTCCCC
TGCGCCCCCCCATCCCACCCACACAACCGCCCTAGCTGACCCCCAAGAAGTGCTCTTGGC
TGACCCCTCTGGTGTGCGGTGAGGGGCTTTCTCTTCCCCTTCCTGTTTCAAACTCCCCCC
CCCCATCGCCTTCTGCACAGGGGTGTGGGGGGCTGGGGGAGGTCCCAGCAGAGAGTTTTA
TTATTATCGCTTTATGTTTTTGGTTATTGGTTTTTTTTTGTATAGACCAAAGCAAAGAAA
ATAAAACTAACACACAGATACAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCTTGGGGCCAAGACGCCCCAGTCCTGCCCCTTCTACGGGTGGTGGGTGGGTGATGTG
GCAGGGGCTGAGCTCCCAGGGTCAGAGGCCCGGCCTGACCCCTCTGTGTGCCCCCTCTCC
CCGCCAGGCGCTGTTCCCCATCTGAGAGGCTCTCCGTGCAGGCGATGGGACGAGATAGCA
AAGTGCCTGAGCCCGGGCAGCAGGGCTGCGACTTCCGGCTGAACCCCGCGCCTCCAGAGG
TCCCTCTGTAGGGTCTTTCTTGGGATGGTGATCTGCTCCTGCTTTTCTGTTCTGGGCCGT
AGGTCCAGGGCCCGACACCCCCTCCCCACCCCCAAAGCCCTGGCACTAAAACTTTAGACT
CCAGGCACTCACTCTGTCCCCCTAGAAACCCCTCCCCGTCTCCTCCCCGGCCGCCCTTCT
CCAGCAGCTGGGCCCCTTGGGGCCTTGGGTTGCTTCTCTGGCTCTGATTATGTCATAGAA
CTCCACCCAACCAACTGTGCTGAGCCCCCAGGGTCTCCAGGCCCCAGGTTCAAGGCCCAA
AGACTCAGAATCCAAAGCTTATCTTGAGAAGTTCAGGGATCGTCCGGGGAGATGGGGCGG
AGATGCGGAGAGCGAGTCCCCCGCTCCGGGACACTGCCTGCTCCTCTCTCCTGGATGTTC
AATGGCTTTGGCCCCCTCCCAGGGGAGCTCGGGGACAGCTCCCTCCTCGCCCCTCTCCCC
TGCGCCCCCCCATCCCACCCACACAACCGCCCTAGCTGACCCCCAAGAAGTGCTCTTGGC
TGACCCCTCTGGTGTGCGGTGAGGGGCTTTCTCTTCCCCTTCCTGTTTCAAACTCCCCCC
CCCCATCGCCTTCTGCACAGGGGTGTGGGGGGCTGGGGGAGGTCCCAGCAGAGAGTTTTA
TTATTATCGCTTTATGTTTTTGGTTATTGGTTTTTTTTTGTATAGACCAAAGCAAAGAAA
ATAAAACTAACACACAGATACAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               282-397, - strand, RNAz p=0.927102
               

               
               637-897, - strand, RNAz p=0.884987

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               282-397, - strand, RNAz p=0.927102
               

               
               637-897, - strand, RNAz p=0.884987

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               844-932, + strand, RNAmicro p=0.999852

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               844-932, + strand, RNAmicro p=0.999852

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               25-979, gnl|bosTau2|chr23 (194121-195033)
               

               
               25-979, gnl|Hg17|chr17 (37165322-37164388)
               

               
               25-979, gnl|Mm7|chr11 (100480585-100479662)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-979, gnl|bosTau2|chr23 (194121-195033)
               

               
               25-979, gnl|Hg17|chr17 (37165322-37164388)
               

               
               25-979, gnl|Mm7|chr11 (100480585-100479662)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ece (0.229305)
               

               
               jej (0.197844)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               cty (0.10408)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               jej (0.197844)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)
               

               
               cty (0.10408)

	282-397, - strand, RNAz p=0.927102
	637-897, - strand, RNAz p=0.884987

	25-979, gnl\|bosTau2\|chr23 (194121-195033)
	25-979, gnl\|Hg17\|chr17 (37165322-37164388)
	25-979, gnl\|Mm7\|chr11 (100480585-100479662)

	ece (0.229305)
	jej (0.197844)
	nep (0.183925)
	ill (0.175593)
	nca (0.136874)
	nmm (0.132802)
	eep (0.122564)
	cty (0.10408)