Ss1.1-Ova1-OVR010030G01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGGAAATTCTTCAGATCCATACCAAGAATATGAAGCTGGCAGATGATGTGGACCTTGAA CAGGTAGCCAATGAAACTCATGGGCATGTTGGTGCTGACTTAGCAGCCCTGTGCTCAGAG GCTGCTCTGCAAGCCATCCGCAAAAAGATGGACCTCATTGACCTAGAAGACGAAACCATC GATGCTGAGGTCATGAACTCCCTGGCAGTTACCATGGATGACTTCCGATGGGCCCTAAGC CAGAGCAACCCATCAGCACTTCGGGAAACTGTGGTAGAGGTGCCACAGGTGACCTGGGAG GACATTGGGGGCTTGGAGGATGTCAAACGTGAGCTTCAGGAGCTGGTCCAGTATCCTGTG GAGCACCCAGACAAATTCCTCAAGTTTGGCATGACACCCTCCAAGGGAGTGCTATTCTAT GGACCTCCTGGCTGTGGGAAAACCTTGCTGGCCAAAGCCATTGCTAATGAGTGCCAGGCC AACTTCATCTCCATCAAAGGTCCTGAGCTGCTCACCATGTGGTTTGGGGAATCAGAGGCC AATGTTAGGGAAATCTTTGACAAGGCCCGCCAAGCTGCCCCCTGTGTACTGTTCTTTGAT GAGCTGGATTCAATTGCCAAGGCCCGTGGTGGCAACATTGGAGATGGTGGTGGGGCTGCC GACCGAGTCATCAACCAGATCTTGACAGAAATGGATGGCATGTCCACAAAAAAAAATGTG TTTATCATTGGCGCTACCAACCGACCTGACATCATTGATCCTGCCATCTTGCGACCTGGC CGCCTTGATCAGCTCATCTACATCCCACTTCCTGATGAGAAGTCCCGTGTCGCCATTCTC AAGGCCAACCTGCGCAAGTCCCCTGTTGCCAAGGATGTGGATTTGGAGTTCCTGGCTAAG ATGACTAATGGCTTCTCTGGAGCTGACTTGACAGAGATTTGCCAACGTGCTTGCAAGCTG GCCATCCGAGAATCAATCGAGAGTGAGATTAGGCGAGAACGGGAGAGGCAGACCAACCCA TCGGCCATGGAGGTAGAGGAAGATGATCCAGTGCCTGAGATCCGACGGGATCACTTTGAG GAAGCCATGCGTTTTGCCCGCCGTTCTGTTAGTGATAATGACATCCGGAAGTATGAGATG TTTGCTCAGACCCTTCAGCAGAGTCGAGGCTTTGGCAGCTTCAGATTCCCTTCAGGAAAC CAAGGTGGAGCTGGACCCAGTCAGGGCAGTGGCGGTGGCACAGGTGGCAGTGTGTACACG GAAGATAATGATGATGACCTGTATGGCTAAGTGGTGGTAGCCAGCATGCAGTGAGCTGGC CTGGCTGGACTTTGTTCCCTGAGGGTGGGGGCGCCCGCCCAGGAGGGACCACGGGTGCGC CCACGGCCTGTTCCATTCCTCAGTCTGAACAGTTCAGCTACAGTCAGACTCTGGACAGGG GGTTAACTGTTGGAAAAAAATTCAAAACAAAAGTGATAAAATAAAAGCAATTTTCATTTG GGAGGCGGAGAGTGAATTACCAACAGGGAATTGGGCCTTGGGCCTATGCCACTTCTGTTG TAGTTGGGGCAGTGCAGGGGACCTCTGTGGGTGCGAAGAAAGGCATTATTGCCACTCCCC ACAGTAAAGCATCTGCACTTCACTCAATGCTGCCCATGCCCTCCCTTCTTCCCCCTACCC AACTTGGGCAGGAGGATGAAGGGCTCCAGTTGCTGGGTGTTTATATAGAGTAGGTTGATT TTTATTTTACATGCTTTTGAGTTAATGTTGGAAAACTAATCACAAGCAGTTTCTAAACCA AAAATGACATGCTGTAAAAGGACAATAAACGTTGGGTCAAAATGGAGCCTGAGTCCTGGC CCCTGTGCCTGCTTCTTTTCCTGGGAAGGGCCTTGGGCCTCATTGCCAAGGCACTCTTCC ACATGTGAAATCCTGGGAGTAGGATTGCACCACCTTCCCCTCCTGATAACATTGGTATGC TGCTGCCTCGCCCAGTGTTTGCAGTATCATTGGAGAGGACTGCAGTGGAGGGAGAGCAGT CTTACAGAGTTCCAGTGTGGAGAATGTGGCATCCTCCACCTGTGTCTGGTTGGGTGGTGA GACTAGTCCTGGAGAGCCCCCATTTCCTGACTGAGGCTGGATTGGGGTGCCCTCCAAAAA TCTTAAGGTTGTAGAAAGGTAAAGTCTCTGTCTGGAGAGATGGATGTTCTCTTGATGCAT CTAAAAGTTCCATATATTCATGTTCTGGTTAAGGATCACTTAACAATTATGTCCACCTTT ATCTTATGTAATTTGTATTATAAAAACATAGCTTGTTTTCTAATATAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGGAAATTCTTCAGATCCATACCAAGAATATGAAGCTGGCAGATGATGTGGACCTTGAA CAGGTAGCCAATGAAACTCATGGGCATGTTGGTGCTGACTTAGCAGCCCTGTGCTCAGAG GCTGCTCTGCAAGCCATCCGCAAAAAGATGGACCTCATTGACCTAGAAGACGAAACCATC GATGCTGAGGTCATGAACTCCCTGGCAGTTACCATGGATGACTTCCGATGGGCCCTAAGC CAGAGCAACCCATCAGCACTTCGGGAAACTGTGGTAGAGGTGCCACAGGTGACCTGGGAG GACATTGGGGGCTTGGAGGATGTCAAACGTGAGCTTCAGGAGCTGGTCCAGTATCCTGTG GAGCACCCAGACAAATTCCTCAAGTTTGGCATGACACCCTCCAAGGGAGTGCTATTCTAT GGACCTCCTGGCTGTGGGAAAACCTTGCTGGCCAAAGCCATTGCTAATGAGTGCCAGGCC AACTTCATCTCCATCAAAGGTCCTGAGCTGCTCACCATGTGGTTTGGGGAATCAGAGGCC AATGTTAGGGAAATCTTTGACAAGGCCCGCCAAGCTGCCCCCTGTGTACTGTTCTTTGAT GAGCTGGATTCAATTGCCAAGGCCCGTGGTGGCAACATTGGAGATGGTGGTGGGGCTGCC GACCGAGTCATCAACCAGATCTTGACAGAAATGGATGGCATGTCCACAAAAAAAAATGTG TTTATCATTGGCGCTACCAACCGACCTGACATCATTGATCCTGCCATCTTGCGACCTGGC CGCCTTGATCAGCTCATCTACATCCCACTTCCTGATGAGAAGTCCCGTGTCGCCATTCTC AAGGCCAACCTGCGCAAGTCCCCTGTTGCCAAGGATGTGGATTTGGAGTTCCTGGCTAAG ATGACTAATGGCTTCTCTGGAGCTGACTTGACAGAGATTTGCCAACGTGCTTGCAAGCTG GCCATCCGAGAATCAATCGAGAGTGAGATTAGGCGAGAACGGGAGAGGCAGACCAACCCA TCGGCCATGGAGGTAGAGGAAGATGATCCAGTGCCTGAGATCCGACGGGATCACTTTGAG GAAGCCATGCGTTTTGCCCGCCGTTCTGTTAGTGATAATGACATCCGGAAGTATGAGATG TTTGCTCAGACCCTTCAGCAGAGTCGAGGCTTTGGCAGCTTCAGATTCCCTTCAGGAAAC CAAGGTGGAGCTGGACCCAGTCAGGGCAGTGGCGGTGGCACAGGTGGCAGTGTGTACACG GAAGATAATGATGATGACCTGTATGGCTAAGTGGTGGTAGCCAGCATGCAGTGAGCTGGC CTGGCTGGACTTTGTTCCCTGAGGGTGGGGGCGCCCGCCCAGGAGGGACCACGGGTGCGC CCACGGCCTGTTCCATTCCTCAGTCTGAACAGTTCAGCTACAGTCAGACTCTGGACAGGG GGTTAACTGTTGGAAAAAAATTCAAAACAAAAGTGATAAAATAAAAGCAATTTTCATTTG GGAGGCGGAGAGTGAATTACCAACAGGGAATTGGGCCTTGGGCCTATGCCACTTCTGTTG TAGTTGGGGCAGTGCAGGGGACCTCTGTGGGTGCGAAGAAAGGCATTATTGCCACTCCCC ACAGTAAAGCATCTGCACTTCACTCAATGCTGCCCATGCCCTCCCTTCTTCCCCCTACCC AACTTGGGCAGGAGGATGAAGGGCTCCAGTTGCTGGGTGTTTATATAGAGTAGGTTGATT TTTATTTTACATGCTTTTGAGTTAATGTTGGAAAACTAATCACAAGCAGTTTCTAAACCA AAAATGACATGCTGTAAAAGGACAATAAACGTTGGGTCAAAATGGAGCCTGAGTCCTGGC CCCTGTGCCTGCTTCTTTTCCTGGGAAGGGCCTTGGGCCTCATTGCCAAGGCACTCTTCC ACATGTGAAATCCTGGGAGTAGGATTGCACCACCTTCCCCTCCTGATAACATTGGTATGC TGCTGCCTCGCCCAGTGTTTGCAGTATCATTGGAGAGGACTGCAGTGGAGGGAGAGCAGT CTTACAGAGTTCCAGTGTGGAGAATGTGGCATCCTCCACCTGTGTCTGGTTGGGTGGTGA GACTAGTCCTGGAGAGCCCCCATTTCCTGACTGAGGCTGGATTGGGGTGCCCTCCAAAAA TCTTAAGGTTGTAGAAAGGTAAAGTCTCTGTCTGGAGAGATGGATGTTCTCTTGATGCAT CTAAAAGTTCCATATATTCATGTTCTGGTTAAGGATCACTTAACAATTATGTCCACCTTT ATCTTATGTAATTTGTATTATAAAAACATAGCTTGTTTTCTAATATAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 61-2108, - strand, RNAz p=0.920604 | |
| 1611-1768, - strand, RNAz p=0.844645 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 61-2108, - strand, RNAz p=0.920604 | |
| 1611-1768, - strand, RNAz p=0.844645 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 61-228, gnl|bosTau2|chr8 (27854743-27854576) | |
| 61-228, gnl|canFam2|chr11 (54670412-54670664) | |
| 61-228, gnl|danRer3|chr5 (49761269-49761502) | |
| 61-228, gnl|dasNov1|scaffold_21603 (18733-18471) | |
| 61-228, gnl|fr1|chrUn (197875284-197875515) | |
| 61-228, gnl|galGal2|chrZ_random (7951303-7951549) | |
| 61-228, gnl|hg17|chr9 (35050962-35051219) | |
| 61-228, gnl|Hg17|chr9 (35051179-35051012) | |
| 61-228, gnl|loxAfr1|scaffold_9382 (32066-31807) | |
| 61-228, gnl|mm7|chr4 (42998281-42998548) | |
| 61-228, gnl|Mm7|chr4 (42998512-42998345) | |
| 61-228, gnl|monDom2|scaffold_17 (46866190-46865929) | |
| 61-228, gnl|oryCun1|scaffold_210675 (86246-85988) | |
| 61-228, gnl|panTro1|chr11 (35606684-35606941) | |
| 61-228, gnl|rheMac2|chr15 (42493051-42492794) | |
| 61-228, gnl|rn3|chr5 (59476329-59476593) | |
| 61-228, gnl|tetNig1|chr12 (3126591-3126812) | |
| 61-228, gnl|xenTro1|scaffold_713 (542826-542589) | |
| 229-351, gnl|bosTau2|chr8 (27854485-27854363) | |
| 229-351, gnl|canFam2|chr11 (54670235-54670411) | |
| 229-351, gnl|danRer3|chr5 (49761084-49761268) | |
| 229-351, gnl|dasNov1|scaffold_21603 (18914-18734) | |
| 229-351, gnl|echTel1|scaffold_317126 (11168-10986) | |
| 229-351, gnl|fr1|chrUn (197875135-197875283) | |
| 229-351, gnl|galGal2|chrZ_random (7951132-7951300) | |
| 229-351, gnl|hg17|chr9 (35050780-35050961) | |
| 229-351, gnl|Hg17|chr9 (35050920-35050798) | |
| 229-351, gnl|loxAfr1|scaffold_9382 (32248-32067) | |
| 229-351, gnl|mm7|chr4 (42998100-42998280) | |
| 229-351, gnl|Mm7|chr4 (42998240-42998118) | |
| 229-351, gnl|monDom2|scaffold_17 (46866373-46866191) | |
| 229-351, gnl|oryCun1|scaffold_210675 (86428-86247) | |
| 229-351, gnl|panTro1|chr11 (35606502-35606683) | |
| 229-351, gnl|rheMac2|chr15 (42493233-42493052) | |
| 229-351, gnl|rn3|chr5 (59476145-59476328) | |
| 229-351, gnl|tetNig1|chr12 (3126421-3126590) | |
| 229-351, gnl|xenTro1|scaffold_713 (543003-542828) | |
| 563-874, gnl|bosTau2|chr8 (27853708-27853397) | |
| 563-874, gnl|Hg17|chr9 (35050082-35049489) | |
| 563-874, gnl|Mm7|chr4 (42996965-42996654) | |
| 1182-2148, gnl|bosTau2|chr8 (27851232-27850250) | |
| 1182-2148, gnl|Hg17|chr9 (35047222-35046212) | |
| 2190-2328, gnl|bosTau2|chr8 (27850246-27850113) | |
| 2190-2328, gnl|Hg17|chr9 (35046208-35046063) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 61-228, gnl|bosTau2|chr8 (27854743-27854576) | |
| 61-228, gnl|canFam2|chr11 (54670412-54670664) | |
| 61-228, gnl|danRer3|chr5 (49761269-49761502) | |
| 61-228, gnl|dasNov1|scaffold_21603 (18733-18471) | |
| 61-228, gnl|fr1|chrUn (197875284-197875515) | |
| 61-228, gnl|galGal2|chrZ_random (7951303-7951549) | |
| 61-228, gnl|hg17|chr9 (35050962-35051219) | |
| 61-228, gnl|Hg17|chr9 (35051179-35051012) | |
| 61-228, gnl|loxAfr1|scaffold_9382 (32066-31807) | |
| 61-228, gnl|mm7|chr4 (42998281-42998548) | |
| 61-228, gnl|Mm7|chr4 (42998512-42998345) | |
| 61-228, gnl|monDom2|scaffold_17 (46866190-46865929) | |
| 61-228, gnl|oryCun1|scaffold_210675 (86246-85988) | |
| 61-228, gnl|panTro1|chr11 (35606684-35606941) | |
| 61-228, gnl|rheMac2|chr15 (42493051-42492794) | |
| 61-228, gnl|rn3|chr5 (59476329-59476593) | |
| 61-228, gnl|tetNig1|chr12 (3126591-3126812) | |
| 61-228, gnl|xenTro1|scaffold_713 (542826-542589) | |
| 229-351, gnl|bosTau2|chr8 (27854485-27854363) | |
| 229-351, gnl|canFam2|chr11 (54670235-54670411) | |
| 229-351, gnl|danRer3|chr5 (49761084-49761268) | |
| 229-351, gnl|dasNov1|scaffold_21603 (18914-18734) | |
| 229-351, gnl|echTel1|scaffold_317126 (11168-10986) | |
| 229-351, gnl|fr1|chrUn (197875135-197875283) | |
| 229-351, gnl|galGal2|chrZ_random (7951132-7951300) | |
| 229-351, gnl|hg17|chr9 (35050780-35050961) | |
| 229-351, gnl|Hg17|chr9 (35050920-35050798) | |
| 229-351, gnl|loxAfr1|scaffold_9382 (32248-32067) | |
| 229-351, gnl|mm7|chr4 (42998100-42998280) | |
| 229-351, gnl|Mm7|chr4 (42998240-42998118) | |
| 229-351, gnl|monDom2|scaffold_17 (46866373-46866191) | |
| 229-351, gnl|oryCun1|scaffold_210675 (86428-86247) | |
| 229-351, gnl|panTro1|chr11 (35606502-35606683) | |
| 229-351, gnl|rheMac2|chr15 (42493233-42493052) | |
| 229-351, gnl|rn3|chr5 (59476145-59476328) | |
| 229-351, gnl|tetNig1|chr12 (3126421-3126590) | |
| 229-351, gnl|xenTro1|scaffold_713 (543003-542828) | |
| 563-874, gnl|bosTau2|chr8 (27853708-27853397) | |
| 563-874, gnl|Hg17|chr9 (35050082-35049489) | |
| 563-874, gnl|Mm7|chr4 (42996965-42996654) | |
| 1182-2148, gnl|bosTau2|chr8 (27851232-27850250) | |
| 1182-2148, gnl|Hg17|chr9 (35047222-35046212) | |
| 2190-2328, gnl|bosTau2|chr8 (27850246-27850113) | |
| 2190-2328, gnl|Hg17|chr9 (35046208-35046063) |
| Expressed library(ies): 30 entry(ies) | More info |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
| mas (0.630915) | |
| col (0.585023) | |
| mgp (0.461361) | |
| cov (0.396458) | |
| eep (0.367692) | |
| eru (0.360144) | |
| nje (0.33184) | |
| nco (0.323468) | |
| hyp (0.285673) | |
| hlv (0.278513) | |
| nmm (0.265604) | |
| cly (0.241284) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| jej (0.197844) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| eli (0.151814) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ova (0.129132) | |
| bla (0.124347) | |
| med (0.116252) | |
| ldo (0.0970026) |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.630915) | |
| col (0.585023) | |
| mgp (0.461361) | |
| cov (0.396458) | |
| eep (0.367692) | |
| eru (0.360144) | |
| nje (0.33184) | |
| nco (0.323468) | |
| hyp (0.285673) | |
| hlv (0.278513) | |
| nmm (0.265604) | |
| cly (0.241284) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| jej (0.197844) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| duo (0.172801) | |
| fhi (0.169578) | |
| eli (0.151814) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ova (0.129132) | |
| bla (0.124347) | |
| med (0.116252) | |
| ldo (0.0970026) |