Non-Coding RNA Search

Ss1.1-Ova1-OVR010030G03.5

Sequence:


               
               CCTCAGCTGCCTGCCAGATGTGGAGAGGGCCACGCTGACTCTTCTTCTGGACCACCTGCG
CCTTGTCTCCTCCTTCCACGCCCACAACCGCATGACCCCGCAGAACCTGGCAGTGTGCTT
CGGTCCCGTGCTGCTGCCGGCGCGCCAGACACCCACCAGGCCCCGCATCCGCAGCTCTGG
CCCAGGCCTCTCCAACGCTGTGGACTTCAAGCGCCACATCGAGGTGCTGCACTACCTGCT
TCAGGCCTGGCCAGATCCCCGCAGGCCCCCAGAGGCTCCGGAGTTAGTCCCGTACCTGCG
GCCCAAACCACAGCCGCCGCTGCACTTGCCGCTAGCGGGCCCGGATGTGGTGACTCGGCC
TCGCGACCGAAGCGGCCCCGAGAGCCCCCCGAGCAATCGCTACGCCGGTGACTGGAGCGT
TTGCGGGAGGGACTTCCTGCCCTGTGGGCGGGACTTCCTGCCCGGGCCAGACTACGACCA
CGTGACGGGCAGCGACAGCGAAGATGAGGAAGAAGTGGGTGGTGAGACGACAGGCGCCAC
CGACTTCGAAGACGATTTCGAGGCGCCCTTCAACCCGCACCTGAACCTCAAAGACTTTGA
TGCCCTCATCCTGGACCTGGAGAGAGAGCTCTCCAAGCAGATCAACGTGTGCCTCTGAGC
CGGGCGGGGCTGGACCCCATCACTAAGGCCGGGCTCCTGGCTGCCAGGGTGGTACCCTAC
CGATCTAGGGGTGCCAGACTTGTAGCTCAGGCCTAGCTCCTGGTTCTTGGGAAGTTACCT
AGAGGCCAGCCATCCCGTTGATGAGAATCATTCCTCGTTTCCAGTGCTCAATATTTGGAC
ACTGGTTGCGAAGACCAGGGTCTGGGGATTTTAGGGACCATCTACTGTGGCCATTTTTTC
TGAGTACAAAGGGCTTTCTGCCGAGGCTGCCAAAAGGCAGTTCTGCTTGCAGGGCTGGCC
TCTCTTGCCTCTCCTTGGCCAGGGTTAACACCAGTTACTGTGAGCATCACCCTGGGATGG
TGAGACACCCACCCCCAAAGACAGTCCTCTTGCTGCTGCCAACCAAATCAGTATTAGCTT
TGAGCACTGCACTCTGCTTCTCCTTCGGCGGGCCCAAGGACTATCATGAGATGCTGTCTG
AGGCAGGGTTCGGGAGAGCCCCCCTCCCAAGCTCTGGCTGGAGAGGGGCAGCCTGGGGCT
TATATAGGAAAACAGCTGGTTTTCCCACTGCTTTTTTCTAGAGAAAAATCCCACAATTGC
CTCAAACCAGCAAATGGAGACAGCAGAGTCTGGCCCTTCCCCCTCCCCAAATATTCCTCC
CCATTCTTGAAGAAACTGAGCACTTATATGACCTCCCTTTAGGAGGGGCCCCACTTGAAG
TGTCAGGCTGGGAGCACTTTGGTACGGAACATATTTATTGCCTCCATGCATGTGTGTCTG
TGTGTGAGGACTAGTGTGTATGGACATGTCTAGAGTAAGCATGTGGGGCTTTCAGGGACC
ACAGAGCGGGGAAAGAGTTTGCAGTGCCAGGGCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCAGCTGCCTGCCAGATGTGGAGAGGGCCACGCTGACTCTTCTTCTGGACCACCTGCG
CCTTGTCTCCTCCTTCCACGCCCACAACCGCATGACCCCGCAGAACCTGGCAGTGTGCTT
CGGTCCCGTGCTGCTGCCGGCGCGCCAGACACCCACCAGGCCCCGCATCCGCAGCTCTGG
CCCAGGCCTCTCCAACGCTGTGGACTTCAAGCGCCACATCGAGGTGCTGCACTACCTGCT
TCAGGCCTGGCCAGATCCCCGCAGGCCCCCAGAGGCTCCGGAGTTAGTCCCGTACCTGCG
GCCCAAACCACAGCCGCCGCTGCACTTGCCGCTAGCGGGCCCGGATGTGGTGACTCGGCC
TCGCGACCGAAGCGGCCCCGAGAGCCCCCCGAGCAATCGCTACGCCGGTGACTGGAGCGT
TTGCGGGAGGGACTTCCTGCCCTGTGGGCGGGACTTCCTGCCCGGGCCAGACTACGACCA
CGTGACGGGCAGCGACAGCGAAGATGAGGAAGAAGTGGGTGGTGAGACGACAGGCGCCAC
CGACTTCGAAGACGATTTCGAGGCGCCCTTCAACCCGCACCTGAACCTCAAAGACTTTGA
TGCCCTCATCCTGGACCTGGAGAGAGAGCTCTCCAAGCAGATCAACGTGTGCCTCTGAGC
CGGGCGGGGCTGGACCCCATCACTAAGGCCGGGCTCCTGGCTGCCAGGGTGGTACCCTAC
CGATCTAGGGGTGCCAGACTTGTAGCTCAGGCCTAGCTCCTGGTTCTTGGGAAGTTACCT
AGAGGCCAGCCATCCCGTTGATGAGAATCATTCCTCGTTTCCAGTGCTCAATATTTGGAC
ACTGGTTGCGAAGACCAGGGTCTGGGGATTTTAGGGACCATCTACTGTGGCCATTTTTTC
TGAGTACAAAGGGCTTTCTGCCGAGGCTGCCAAAAGGCAGTTCTGCTTGCAGGGCTGGCC
TCTCTTGCCTCTCCTTGGCCAGGGTTAACACCAGTTACTGTGAGCATCACCCTGGGATGG
TGAGACACCCACCCCCAAAGACAGTCCTCTTGCTGCTGCCAACCAAATCAGTATTAGCTT
TGAGCACTGCACTCTGCTTCTCCTTCGGCGGGCCCAAGGACTATCATGAGATGCTGTCTG
AGGCAGGGTTCGGGAGAGCCCCCCTCCCAAGCTCTGGCTGGAGAGGGGCAGCCTGGGGCT
TATATAGGAAAACAGCTGGTTTTCCCACTGCTTTTTTCTAGAGAAAAATCCCACAATTGC
CTCAAACCAGCAAATGGAGACAGCAGAGTCTGGCCCTTCCCCCTCCCCAAATATTCCTCC
CCATTCTTGAAGAAACTGAGCACTTATATGACCTCCCTTTAGGAGGGGCCCCACTTGAAG
TGTCAGGCTGGGAGCACTTTGGTACGGAACATATTTATTGCCTCCATGCATGTGTGTCTG
TGTGTGAGGACTAGTGTGTATGGACATGTCTAGAGTAAGCATGTGGGGCTTTCAGGGACC
ACAGAGCGGGGAAAGAGTTTGCAGTGCCAGGGCACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9H8K4_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9H8K4_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               565-679, - strand, RNAz p=0.519302
               

               
               1149-1264, - strand, RNAz p=0.80975
               

               
               1300-1450, - strand, RNAz p=0.9658

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               565-679, - strand, RNAz p=0.519302
               

               
               1149-1264, - strand, RNAz p=0.80975
               

               
               1300-1450, - strand, RNAz p=0.9658

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               252-1536, gnl|bosTau2|chr7 (7134798-7136070)
               

               
               252-1536, gnl|Hg17|chr19 (15085368-15086659)
               

               
               252-1536, gnl|Mm7|chr10 (78240518-78239209)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               252-1536, gnl|bosTau2|chr7 (7134798-7136070)
               

               
               252-1536, gnl|Hg17|chr19 (15085368-15086659)
               

               
               252-1536, gnl|Mm7|chr10 (78240518-78239209)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ute (0.132784)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

	565-679, - strand, RNAz p=0.519302
	1149-1264, - strand, RNAz p=0.80975
	1300-1450, - strand, RNAz p=0.9658

	252-1536, gnl\|bosTau2\|chr7 (7134798-7136070)
	252-1536, gnl\|Hg17\|chr19 (15085368-15086659)
	252-1536, gnl\|Mm7\|chr10 (78240518-78239209)